View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2932_low_48 (Length: 250)
Name: NF2932_low_48
Description: NF2932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2932_low_48 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 8 - 250
Target Start/End: Complemental strand, 15394332 - 15394090
Alignment:
| Q |
8 |
cagcacagaaaacttctgaaacaaatcaaaataacatagatcgaaaaattacttaaaatcacttaaaagacatgttgtagacatcaaaatttcaacgttg |
107 |
Q |
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|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
15394332 |
cagcgcagaaaacttctgaaacaaatcaaattaacatagatcgaaaaattacttaaaatcacttaaaagacatgttgtagacatcaaaatttcaaagttg |
15394233 |
T |
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| Q |
108 |
caaattgcagtatcctatgtaaacaaaatagaattcattgcatcatactttttctctgtacatatttttgagccttcctgcttctgcatccattggctgg |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15394232 |
caaattgcagtatcctatgtaaacaaaatagaattcattgcatcatactttttctctgtacatatttttgagccttcctgcttctgcatccattggctgg |
15394133 |
T |
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| Q |
208 |
tcgaatttctgttgcaaatcccacatactacctttgttatcat |
250 |
Q |
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| T |
15394132 |
tcaaatttctgttgcaaatcccacatactacctttgttatcat |
15394090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 8 - 250
Target Start/End: Complemental strand, 15385898 - 15385655
Alignment:
| Q |
8 |
cagcacagaaaacttctgaaacaaatcaaaataacatagatcgaaaaa-ttacttaaaatcacttaaaagacatgttgtagacatcaaaatttcaacgtt |
106 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||| ||| |
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| T |
15385898 |
cagcgcagaaaacttctgaaacaaatcaaaataacatagatcgaaaaaattacttaaaatcacttaacagacatgtcgtagacatcaaaatttcaaagtt |
15385799 |
T |
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| Q |
107 |
gcaaattgcagtatcctatgtaaacaaaatagaattcattgcatcatactttttctctgtacatatttttgagccttcctgcttctgcatccattggctg |
206 |
Q |
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| T |
15385798 |
gcaaattgcagtttcctatgtaaacaaaatagaattcattgcatcatactttttctctgtacatatttctgagccttcctgcttctgcatccattggctg |
15385699 |
T |
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| Q |
207 |
gtcgaatttctgttgcaaatcccacatactacctttgttatcat |
250 |
Q |
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| T |
15385698 |
gtcaagtttctgttccaaatcccacatactgcctttgttatcat |
15385655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 149 - 249
Target Start/End: Original strand, 38669678 - 38669778
Alignment:
| Q |
149 |
atcatactttttctctgtacatatttttgagccttcctgcttctgcatccattggctggtcgaatttctgttgcaaatcccacatactacctttgttatc |
248 |
Q |
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||||||||||||||||||||||||| |||| |||||||| ||| | ||||| |||||||| | ||||| | ||||||||||||||||||||||||||| |
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| T |
38669678 |
atcatactttttctctgtacatattcctgagtcttcctgcctcttcctccataggctggtcaagcttctgatccaaatcccacatactacctttgttatc |
38669777 |
T |
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| Q |
249 |
a |
249 |
Q |
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| T |
38669778 |
a |
38669778 |
T |
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