View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2932_low_53 (Length: 243)
Name: NF2932_low_53
Description: NF2932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2932_low_53 |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 14 - 224
Target Start/End: Complemental strand, 33063238 - 33063031
Alignment:
| Q |
14 |
cacagacacgtatgttagcgtattcagagattcattattcccaaatattactacaactatggatttcaaccttcacattgctcagaaaatcaaagttcaa |
113 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33063238 |
cacagacacgtatgttagcgtattcagagattcattattcccaaatattactacaactatggatttcaaccttcacattgctcagaaaatcaaagttcaa |
33063139 |
T |
|
| Q |
114 |
atagtgtataaaggagataaacaaaatctgttagtgtttgtcaaggatgttgttgacaactacaagttcccatcattagtgtttaatcattctgttgatt |
213 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
33063138 |
atagtgtataaaggagatgaacaaaatctgttagtgtttgtcaaggat---gttgacaactacaagttcccatcattagtgcttaatcattctgttgatt |
33063042 |
T |
|
| Q |
214 |
taggagcttat |
224 |
Q |
| |
|
||||||||||| |
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|
| T |
33063041 |
taggagcttat |
33063031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 14 - 224
Target Start/End: Complemental strand, 33064333 - 33064126
Alignment:
| Q |
14 |
cacagacacgtatgttagcgtattcagagattcattattcccaaatattactacaactatggatttcaaccttcacattgctcagaaaatcaaagttcaa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33064333 |
cacagacacgtatgttagcgtattcagagattcattattcccaaatattactacaactatggatttcaaccttcacattgctcagaaaatcaaagttcaa |
33064234 |
T |
|
| Q |
114 |
atagtgtataaaggagataaacaaaatctgttagtgtttgtcaaggatgttgttgacaactacaagttcccatcattagtgtttaatcattctgttgatt |
213 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
33064233 |
atagtgtataaaggagatgaacaaaatctgttagtgtttgtcaaggat---gttgacaactacaagttcccatcattagtgcttaatcattctgttgatt |
33064137 |
T |
|
| Q |
214 |
taggagcttat |
224 |
Q |
| |
|
||||||||||| |
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|
| T |
33064136 |
taggagcttat |
33064126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 14 - 224
Target Start/End: Complemental strand, 33065419 - 33065212
Alignment:
| Q |
14 |
cacagacacgtatgttagcgtattcagagattcattattcccaaatattactacaactatggatttcaaccttcacattgctcagaaaatcaaagttcaa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33065419 |
cacagacacgtatgttagcgtattcagagattcattattcccaaatattactacaactatggatttcaaccttcacattgctcagaaaatcaaagttcaa |
33065320 |
T |
|
| Q |
114 |
atagtgtataaaggagataaacaaaatctgttagtgtttgtcaaggatgttgttgacaactacaagttcccatcattagtgtttaatcattctgttgatt |
213 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
33065319 |
atagtgtataaaggagatgaacaaaatctgttagtgtttgtcaaggat---gttgacaactacaagttcccatcattagtgcttaatcattctgttgatt |
33065223 |
T |
|
| Q |
214 |
taggagcttat |
224 |
Q |
| |
|
||||||||||| |
|
|
| T |
33065222 |
taggagcttat |
33065212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 14 - 224
Target Start/End: Complemental strand, 33066493 - 33066286
Alignment:
| Q |
14 |
cacagacacgtatgttagcgtattcagagattcattattcccaaatattactacaactatggatttcaaccttcacattgctcagaaaatcaaagttcaa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33066493 |
cacagacacgtatgttagcgtattcagagattcattattcccaaatattactacaactatggatttcaaccttcacattgctcagaaaatcaaagttcaa |
33066394 |
T |
|
| Q |
114 |
atagtgtataaaggagataaacaaaatctgttagtgtttgtcaaggatgttgttgacaactacaagttcccatcattagtgtttaatcattctgttgatt |
213 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
33066393 |
atagtgtataaaggagatgaacaaaatctgttagtgtttgtcaaggat---gttgacaactacaagttcccatcattagtgcttaatcattctgttgatt |
33066297 |
T |
|
| Q |
214 |
taggagcttat |
224 |
Q |
| |
|
||||||||||| |
|
|
| T |
33066296 |
taggagcttat |
33066286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 14 - 224
Target Start/End: Complemental strand, 33068631 - 33068424
Alignment:
| Q |
14 |
cacagacacgtatgttagcgtattcagagattcattattcccaaatattactacaactatggatttcaaccttcacattgctcagaaaatcaaagttcaa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33068631 |
cacagacacgtatgttagcgtattcagagattcattattcccaaatattactacaactatggatttcaaccttcacattgctcagaaaatcaaagttcaa |
33068532 |
T |
|
| Q |
114 |
atagtgtataaaggagataaacaaaatctgttagtgtttgtcaaggatgttgttgacaactacaagttcccatcattagtgtttaatcattctgttgatt |
213 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
33068531 |
atagtgtataaaggagatgaacaaaatctgttagtgtttgtcaaggat---gttgacaactacaagttcccatcattagtgcttaatcattctgttgatt |
33068435 |
T |
|
| Q |
214 |
taggagcttat |
224 |
Q |
| |
|
||||||||||| |
|
|
| T |
33068434 |
taggagcttat |
33068424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 14 - 224
Target Start/End: Complemental strand, 33067579 - 33067372
Alignment:
| Q |
14 |
cacagacacgtatgttagcgtattcagagattcattattcccaaatattactacaactatggatttcaaccttcacattgctcagaaaatcaaagttcaa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33067579 |
cacagacacgtatgttagcgtattcagagattcattattcccaaatattactacaactatggatttcaaccttcacattgctcagaaaatcaaagttcaa |
33067480 |
T |
|
| Q |
114 |
atagtgtataaaggagataaacaaaatctgttagtgtttgtcaaggatgttgttgacaactacaagttcccatcattagtgtttaatcattctgttgatt |
213 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||| |
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|
| T |
33067479 |
atagtgtataaaggagatgaacaaaatctgttagtgtttgtcaaggat---gttgacaactacaagtttccatcattagtgcttaatcattctgttgatt |
33067383 |
T |
|
| Q |
214 |
taggagcttat |
224 |
Q |
| |
|
||||||||||| |
|
|
| T |
33067382 |
taggagcttat |
33067372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 14 - 224
Target Start/End: Complemental strand, 33069717 - 33069510
Alignment:
| Q |
14 |
cacagacacgtatgttagcgtattcagagattcattattcccaaatattactacaactatggatttcaaccttcacattgctcagaaaatcaaagttcaa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
33069717 |
cacagacacgtatgttagcgtattcagagattcattattcccaaatattactacaactatggatttcaaccttcacattgctaagaaaatcaaagttcaa |
33069618 |
T |
|
| Q |
114 |
atagtgtataaaggagataaacaaaatctgttagtgtttgtcaaggatgttgttgacaactacaagttcccatcattagtgtttaatcattctgttgatt |
213 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
33069617 |
atagtgtataaaggagatgaacaaaatctgttagtgtttatcaaggat---gttgacaactacaagttcccatcattagtgcttaatcattctgttgatt |
33069521 |
T |
|
| Q |
214 |
taggagcttat |
224 |
Q |
| |
|
||||||||||| |
|
|
| T |
33069520 |
taggagcttat |
33069510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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