View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2932_low_54 (Length: 242)
Name: NF2932_low_54
Description: NF2932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2932_low_54 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 14380088 - 14380313
Alignment:
| Q |
1 |
caaaaaaccactgcaatcagagataaataactaatatattttcctaagcaagggttaacaattgtgtaaaatcacagcccattagctaagactcgagagt |
100 |
Q |
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| T |
14380088 |
caaaaaaccactgcaatcagagataaataactaatatattttcctaagcaagggttaacaattgtgtaaaatcacagcccattagctaagactcgagagt |
14380187 |
T |
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| Q |
101 |
atgttcaaattgatggtatagtgtggaaccagtgaaatgaaatgagataatatcccttttacaaatctaaaaaacctattccatttcattttactacatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
14380188 |
atgttcaaattgatggtatagtgtggaaccagtgaaatgaaatgagataatatcccttttacaaatctaaaaaacctattccatttcattctactacatt |
14380287 |
T |
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| Q |
201 |
ccgccctatgtaagcaattcaaatgt |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
14380288 |
ccgccctatgtaagcaattcaaatgt |
14380313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 14246118 - 14245927
Alignment:
| Q |
1 |
caaaaaaccactgcaatcagagataaataact-aatat-attttcctaagcaagggttaacaattgtgtaaaatcacagcccattagctaagactcgaga |
98 |
Q |
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||||||||| | | ||||||||| |||||||| ||||| ||||||||||||||||| ||| |||||||||| ||||| ||||||| | ||||||| ||| |
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| T |
14246118 |
caaaaaaccgccggaatcagagacaaataactcaatattattttcctaagcaagggctaataattgtgtaatctcacaacccattatc-aagactcaaga |
14246020 |
T |
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| Q |
99 |
gtatgttcaaattgatggtatagtgtggaaccagtgaaatgaaatgagataatatcccttttacaaatctaaaaaacctattccatttcattt |
191 |
Q |
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| T |
14246019 |
gtatgtttaaactgatggtatagtgtgaaattagtgaaatgaagtgagataatatccatttttcaaatctaaaaaacatattccatttcattt |
14245927 |
T |
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