View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2932_low_63 (Length: 204)
Name: NF2932_low_63
Description: NF2932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2932_low_63 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 2e-97; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 45282580 - 45282783
Alignment:
| Q |
1 |
aatgttagttatgttttcttcaaaaatgaattttgagagtgatgccactttttctcatatactgtttcttcattcataagtacataattaattaaataaa |
100 |
Q |
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| T |
45282580 |
aatgttagttatgttttcttcaaaaatgaattttgagagtgatgccactttttctcatatactctttcttcattcataagtaaataattaattaaataaa |
45282679 |
T |
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| Q |
101 |
ataaaaatgttttgatcgatgataattgaattacgtaccgaaagtggcggtttgcatggtcttgacaccagcagcaaagctctttctaccggtgacaatg |
200 |
Q |
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| T |
45282680 |
ataaaaaagttttgatcgatgataattgaattaagtaccgaaggtggcggtttgcatggtcttgacaccagcagcaaagctctttctaccagtgacaatg |
45282779 |
T |
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| Q |
201 |
gtcc |
204 |
Q |
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|||| |
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| T |
45282780 |
gtcc |
45282783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 7 - 204
Target Start/End: Original strand, 45274343 - 45274542
Alignment:
| Q |
7 |
agttatgttttcttcaaaaatgaattttgagagtgatgccactttttctcatatactgtttcttcattcataag-tacataattaattaaataaaataaa |
105 |
Q |
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||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||| |||||||| ||||||| || | ||||||| |||||||||||| |
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| T |
45274343 |
agttatgttttcttcaaaaataaattttgagagtgatgctactttttcttatatactctttcttcaatcataaggtatacaattaatcaaataaaataaa |
45274442 |
T |
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| Q |
106 |
aat-gttttgatcgatgataattgaattacgtaccgaaagtggcggtttgcatggtcttgacaccagcagcaaagctctttctaccggtgacaatggtcc |
204 |
Q |
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| T |
45274443 |
aaaagctttgatagataataattgaattacgtaccgaaggtggcggtttgcatggtcttggtaccggcagcaaagttctttctaccggtgacaatggtcc |
45274542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 45293965 - 45294170
Alignment:
| Q |
1 |
aatgttagttatgttttcttcaaaaatgaattttgagagtgatgccactttttctcata--tactgtttcttcattcataag-tacataattaattaaat |
97 |
Q |
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| T |
45293965 |
aatgtgagttatgttttcttcaaaaatgaattttgagagtgatgttactatttctcatcattaccctttcttcattcataaggtacacaatttattaaat |
45294064 |
T |
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| Q |
98 |
aaaataaaaatgttttgatcgatgataattgaattacgtaccgaaagtggcggtttgcatggtcttgacaccagcagcaaagctctttctaccggtgaca |
197 |
Q |
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| T |
45294065 |
aaaataaaaaagttgtgatcgatgataattgaattacttaccgaaggtggcggtttgcatggtcttgacaccagcagcaccgttctttcttccggtaaca |
45294164 |
T |
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| Q |
198 |
atggtc |
203 |
Q |
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|||||| |
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| T |
45294165 |
atggtc |
45294170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 45302925 - 45303130
Alignment:
| Q |
1 |
aatgttagttatgttttcttcaaaaatgaattttgagagtgatgccactttttctcata--tactgtttcttcattcataag-tacataattaattaaat |
97 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||| ||| |||||||||||||||| |||| |||| ||||||| |
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| T |
45302925 |
aatgtgagttatgttttcttcaaaaatgaattttgagagtgatgttactatttctcatcattaccctttcttcattcataaggtacacaatttattaaat |
45303024 |
T |
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| Q |
98 |
aaaataaaaatgttttgatcgatgataattgaattacgtaccgaaagtggcggtttgcatggtcttgacaccagcagcaaagctctttctaccggtgaca |
197 |
Q |
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|||||||||| ||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| | ||||||| ||||| ||| |
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| T |
45303025 |
aaaataaaaaagttgtgatcgatgataattgaattacttaccgaaggtggcggtttgcatggtcttgacaccagcagcaccgttctttcttccggtaaca |
45303124 |
T |
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| Q |
198 |
atggtc |
203 |
Q |
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|||||| |
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| T |
45303125 |
atggtc |
45303130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 11 - 138
Target Start/End: Original strand, 45270818 - 45270943
Alignment:
| Q |
11 |
atgttttcttcaaaaatgaattttgagagtgatgccactttttctcatatactgtttcttcattcataa-gtacataattaattaaataaaataaaaatg |
109 |
Q |
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||||||| ||||||||||||||||||||||||||| ||| |||| ||| |||| | ||||||||||||| ||||| ||||||||||||||||||||| | |
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| T |
45270818 |
atgtttttttcaaaaatgaattttgagagtgatgctactatttcacatctactctctcttcattcataaggtacacaattaattaaataaaataaaa--g |
45270915 |
T |
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| Q |
110 |
ttttgatcgatgataattgaattacgtac |
138 |
Q |
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|||||||||| |||| |||||||||||| |
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| T |
45270916 |
ctttgatcgat-ataactgaattacgtac |
45270943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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