View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2932_low_7 (Length: 576)
Name: NF2932_low_7
Description: NF2932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2932_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 458; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 42 - 563
Target Start/End: Original strand, 8518621 - 8519141
Alignment:
| Q |
42 |
tgctaaccttgtcatgcagggtgaagtaattatttgagatagtgacattagttgagttgtgaataacatcaataagtccatcagtacatcttgacaagaa |
141 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |
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| T |
8518621 |
tgctaaccttgtcatgcagggtgaagtaattatttgacatagtgacattagttgagttgtgaataacatcaataagtccatcagtacatcttgccaaata |
8518720 |
T |
|
| Q |
142 |
gcaatgatcaatccaaatattagaagaagcaaaaacactaattccatcaccatcagaacgttgacgatgtacagcatgttcaatactactacttctaacc |
241 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
8518721 |
gcaatgatcaatccaaatattagaagaagcaaaaacactaattccatcaccatcagaacgttgacgatgtacaacatgttcaatactactacttctaacc |
8518820 |
T |
|
| Q |
242 |
aaaccaggattacttggtttacaataatgaatcataattccatgcacaatcacatgactaacattatgtattgtaatacaagctccatttgcaatttcaa |
341 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
8518821 |
aaaccaggattacttggtttacaataatgaatcataattccatgcacaatcacatgactaacattatgtattgtaatacaaggtccatttgcaatttcaa |
8518920 |
T |
|
| Q |
342 |
ccttaaaacctctaccatcaattgtcttgtaactattcaacataagctcgtttttcagcttaattaccatgtcttttgcaaatgttatccaaagtggttt |
441 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
8518921 |
ccttaaaacctctaccatcaattgtcttgtaactattcaacataagctcgtttttcagcttaattaccatgtcttttgcaaatgttatccaaagtggctt |
8519020 |
T |
|
| Q |
442 |
tgtttgaattacaccataacgaagtgtaccttcttttggttttaatggatcatctgaagggttagtgacttcatatatttcaccaaattttcctccagtt |
541 |
Q |
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| T |
8519021 |
tgtttgaattacaccataacgaagtgtaccttgtttagggtttatcgggtcatctgaagggttagtgacttcatat-tttcaccaaactttcctccagtt |
8519119 |
T |
|
| Q |
542 |
gcattactgccaaatccttttg |
563 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
8519120 |
gcattactgccaaatccttttg |
8519141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 38 - 558
Target Start/End: Original strand, 8526711 - 8527228
Alignment:
| Q |
38 |
tatttgctaaccttgtcatgcagggtgaagtaattatttgagatagtgacattagttgagttgtgaataacatcaataagtccatcagtacatcttgaca |
137 |
Q |
| |
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|||||||| || ||||||||| | ||||||||||||||||||||||||||| ||||||| || |||||||| ||||||||||||||||||||| || |
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| T |
8526711 |
tatttgcttactttgtcatgctgagtgaagtaattatttgagatagtgacaagagttgaggcatgggtaacatcagtaagtccatcagtacatcttgcca |
8526810 |
T |
|
| Q |
138 |
agaagcaatgatcaatccaaatattagaagaagcaaaaacactaattccatcaccatcagaacgttgacgatgtacagcatgttcaatactactacttct |
237 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||| |||| || |||||||||||||||| || |
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| T |
8526811 |
agtagcaatgatcaatccaaatattagaagaagcaaaaacacttataccatcaccatcagaaccttgtcgataaccaacatgttcaatactactcct--- |
8526907 |
T |
|
| Q |
238 |
aaccaaaccaggattacttggtttacaataatgaatcataattccatgcacaatcacatgactaacattatgtattgtaatacaagctccatttgcaatt |
337 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||| |||||||||||||| | ||||||| ||||| |
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| T |
8526908 |
aaccataccaggattacttggtttacaatcatgaatactaataccatgcacaatcacatgactaacaccctgtattgtaatacatggtccatttccaatt |
8527007 |
T |
|
| Q |
338 |
tcaaccttaaaacctctaccatcaattgtcttgtaactattcaacataagctcgtttttcagcttaattaccatgtcttttgcaaatgttatccaaagtg |
437 |
Q |
| |
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||||| ||| |||||||||||||||||| ||||||||||||| ||||| || ||||||| |||||||||||||| |||| |||| ||||||||| || |
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|
| T |
8527008 |
tcaactttagcacctctaccatcaattgttttgtaactattcacaataagttcatttttcaatttaattaccatgtcatttgaaaatattatccaaactg |
8527107 |
T |
|
| Q |
438 |
gttttgtttgaattacaccataacgaagtgtaccttcttttggttttaatggatcatctgaagggttagtgacttcatatatttcaccaaattttcctcc |
537 |
Q |
| |
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||| || ||||||||||||||||||||||||||||| |||||| |||| || ||||| ||||||| ||||||||||||||| |||||| |||||||||| |
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| T |
8527108 |
gttctgcttgaattacaccataacgaagtgtacctttttttgggtttatagggtcatcagaagggtcagtgacttcatatatctcaccatattttcctcc |
8527207 |
T |
|
| Q |
538 |
agttgcattactgccaaatcc |
558 |
Q |
| |
|
| |||||| |||||||||| |
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| T |
8527208 |
aattgcatctttgccaaatcc |
8527228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 515 - 563
Target Start/End: Complemental strand, 8519662 - 8519614
Alignment:
| Q |
515 |
tatatttcaccaaattttcctccagttgcattactgccaaatccttttg |
563 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
8519662 |
tatatttcaccaaactttcctccagttgcattactgccaaatccttttg |
8519614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 50 - 380
Target Start/End: Original strand, 55373607 - 55373934
Alignment:
| Q |
50 |
ttgtcatgcagggtgaagtaattatttgagatagtgacattagttgagttgtgaataacatcaataagtccatcagtacatcttgacaagaagcaatgat |
149 |
Q |
| |
|
||||||||| ||||||||||||| || || || || | | ||||||| ||||||| |||||| ||||||||||| | | | ||| |||||||||| |
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| T |
55373607 |
ttgtcatgctgggtgaagtaattgttagaaatggtaatagcagttgaggcatgaataatatcaattagtccatcagttgaacgagccaaaaagcaatgat |
55373706 |
T |
|
| Q |
150 |
caatccaaatattagaagaagcaaaaacactaattccatcaccatcagaacgttgacgatgtacagcatgttcaatactactacttctaaccaaaccagg |
249 |
Q |
| |
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||||||||||||| || |||||||| | |||||| |||| ||||| | || | ||||| | | |||| ||| | |||| |||||| | |||| |
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| T |
55373707 |
caatccaaatatttgaggaagcaaatatactaatagcatcgccatcggcacctcgacgacggccgacatgatcaggagtact---tctaacaagtccagc |
55373803 |
T |
|
| Q |
250 |
attacttggtttacaataatgaatcataattccatgcacaatcacatgactaacattatgtattgtaatacaagctccatttgcaatttcaaccttaaaa |
349 |
Q |
| |
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|||||||||||||||| |||||| |||||||||| | ||| |||||||||||| |||||||||||||||| ||||||| |||| ||||| |||| |
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| T |
55373804 |
tttacttggtttacaatcatgaatgctaattccatgtataataacatgactaacaccttgtattgtaatacaaggtccatttccaatctcaactttaact |
55373903 |
T |
|
| Q |
350 |
cctctaccatcaattgtcttgtaactattca |
380 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |
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| T |
55373904 |
cctctaccatcaatagtcttgtaactattca |
55373934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 300 - 372
Target Start/End: Original strand, 7593607 - 7593679
Alignment:
| Q |
300 |
taacattatgtattgtaatacaagctccatttgcaatttcaaccttaaaacctctaccatcaattgtcttgta |
372 |
Q |
| |
|
|||||| ||||||||||||||| | ||||||||||| | ||| || |||||| ||||||||||||||||| |
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|
| T |
7593607 |
taacataatgtattgtaatacatccaccatttgcaatgtgaacactagcacctcttccatcaattgtcttgta |
7593679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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