View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2933_low_3 (Length: 425)

Name: NF2933_low_3
Description: NF2933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2933_low_3
NF2933_low_3
[»] chr1 (7 HSPs)
chr1 (17-268)||(24416006-24416257)
chr1 (17-280)||(24310420-24310695)
chr1 (17-316)||(24367342-24367644)
chr1 (17-272)||(24322993-24323249)
chr1 (75-253)||(24340654-24340832)
chr1 (75-253)||(24353019-24353197)
chr1 (75-137)||(24369800-24369862)
[»] chr5 (8 HSPs)
chr5 (75-330)||(42561973-42562225)
chr5 (77-142)||(9120117-9120182)
chr5 (92-142)||(179412-179462)
chr5 (236-278)||(29696448-29696490)
chr5 (236-279)||(29688343-29688386)
chr5 (75-137)||(29688488-29688550)
chr5 (157-191)||(29712166-29712200)
chr5 (78-130)||(29696602-29696654)
[»] chr4 (32 HSPs)
chr4 (78-316)||(49040795-49041032)
chr4 (215-316)||(48863427-48863528)
chr4 (75-142)||(7878737-7878804)
chr4 (75-135)||(7790441-7790501)
chr4 (75-135)||(7908663-7908723)
chr4 (78-139)||(48156072-48156133)
chr4 (77-129)||(50666682-50666734)
chr4 (75-130)||(7771761-7771816)
chr4 (75-142)||(7773465-7773532)
chr4 (80-139)||(48147358-48147417)
chr4 (78-191)||(48863573-48863683)
chr4 (75-136)||(48864395-48864456)
chr4 (75-136)||(49038518-49038579)
chr4 (77-142)||(49043810-49043875)
chr4 (75-135)||(7813838-7813898)
chr4 (75-142)||(45371714-45371781)
chr4 (75-142)||(48853035-48853102)
chr4 (78-130)||(7237386-7237438)
chr4 (75-135)||(7786825-7786885)
chr4 (75-135)||(7800998-7801058)
chr4 (75-137)||(45384532-45384594)
chr4 (85-135)||(48903316-48903366)
chr4 (77-126)||(37826632-37826681)
chr4 (86-135)||(47208238-47208287)
chr4 (75-135)||(7766003-7766063)
chr4 (234-279)||(48898954-48898999)
chr4 (77-142)||(49048197-49048262)
chr4 (90-142)||(45365875-45365927)
chr4 (82-122)||(48735058-48735098)
chr4 (75-127)||(48870929-48870981)
chr4 (75-127)||(48876233-48876285)
chr4 (75-127)||(48886615-48886667)
[»] chr3 (4 HSPs)
chr3 (78-135)||(11024146-11024203)
chr3 (78-137)||(11015134-11015193)
chr3 (78-135)||(11005571-11005628)
chr3 (105-142)||(47451570-47451607)
[»] chr7 (2 HSPs)
chr7 (75-142)||(48884178-48884245)
chr7 (89-130)||(30130916-30130957)
[»] chr6 (2 HSPs)
chr6 (80-142)||(21016175-21016237)
chr6 (89-129)||(14197337-14197377)
[»] chr8 (6 HSPs)
chr8 (75-135)||(15349244-15349304)
chr8 (78-137)||(12195683-12195742)
chr8 (78-137)||(12440111-12440170)
chr8 (87-137)||(4031578-4031628)
chr8 (102-140)||(4962186-4962224)
chr8 (213-265)||(10178221-10178273)


Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 17 - 268
Target Start/End: Complemental strand, 24416257 - 24416006
Alignment:
Q  17 aatatcaccactttttgtacaacaaatgggggaaatgcgaggaatggtatccatgttgagaacaagagttttagtccaagatgactgcactttgtattct 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  24416257 aatatcaccactttttgtacaacaaatgggggaaatgcgaggaatggtatccatgttgagaacaagagttttagtccaagatgactgccctttgtattct 24416158  T
Q  117 ttcatcacccatatatcaactctatccttaaacctcaaaacccatagactgagaaatcctctaaatacccataaactataatctgtagaccaaaattcaa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24416157 ttcatcacccatatatcaactctatccttaaacctcaaaacccatagactgagaaatcctctaaatacccataaactataatctgtagaccaaaattcaa 24416058  T
Q  217 tatcatttgggagaggaatctctagaagtttcctttccgttaaatgaaaggc 268  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  24416057 tatcacttgggagaggaatctctagaagtttcctttccgttaaatgaaaggc 24416006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 17 - 280
Target Start/End: Complemental strand, 24310695 - 24310420
Alignment:
Q  17 aatatcaccactttttgtacaacaaatgggggaaatgcgaggaatggtatccatgttgagaacaagagttttagtccaagatgactgcactttgtattct 116  Q
    |||||||||||||||||||||||| |   ||||||||  || |||||||| ||  |  | ||||||||||||| ||||||| ||||||||||||||||||    
T  24310695 aatatcaccactttttgtacaacatacaagggaaatgtaagaaatggtatgcaaatcaaaaacaagagttttactccaagaagactgcactttgtattct 24310596  T
Q  117 ttcatcacccatatatcaactctatccttaaacctcaaaacccatagactgagaaatcctctaaatacccataaactataatctgtagaccaaaattcaa 216  Q
    ||||||||||||||||||||| ||||||    ||||| |||||||||||||||||||||||||||||||||||||||| ||||||| || | | ||||||    
T  24310595 ttcatcacccatatatcaactttatcctcgtccctcataacccatagactgagaaatcctctaaatacccataaactacaatctgtcgaaccatattcaa 24310496  T
Q  217 t------------atcatttgggagaggaatctctagaagtttcctttccgttaaatgaaaggcaacaataacata 280  Q
    |            ||||| |||||||||||| ||||||||| |||||||  |||||||||||| ||||||||||||    
T  24310495 tatcatcatcatgatcatctgggagaggaatttctagaagtatcctttcaattaaatgaaaggaaacaataacata 24310420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 17 - 316
Target Start/End: Complemental strand, 24367644 - 24367342
Alignment:
Q  17 aatatcaccactttttgtacaacaaatgggggaaatgcgaggaatggtatccatgttgagaacaagagttttagtccaagatgactgcactttgtattct 116  Q
    |||||||||| ||||||||||||| || ||| ||||||||||||||||||||||  | ||||||||||||||||||||||| || |||||||||||||||    
T  24367644 aatatcaccagtttttgtacaacatatagggaaaatgcgaggaatggtatccatagttagaacaagagttttagtccaagacgaatgcactttgtattct 24367545  T
Q  117 ttcatcacccatatatcaactctatccttaaacctcaaaacccatagactgagaaatcctctaaatacccataaactataatctg-tagacca--aaatt 213  Q
    | ||| |||||||||| || | ||||  |   ||||||||||||||||||||||||||||||||||||||||||||  |  ||||  | | ||  | | |    
T  24367544 tccattacccatatataaagtgtatctct---cctcaaaacccatagactgagaaatcctctaaatacccataaaccctggtctgaaaaatcatcatagt 24367448  T
Q  214 ca---atatcatttgggagaggaatctctagaagtttcctttccgttaaatgaaaggcaacaataacataaacatccataccgtgacgaaaagccaacca 310  Q
    ||   ||||||  |||||||||||| || ||||||||||||||| ||||| ||||||||||||||||||  |||   ||| | | |||||||| ||||||    
T  24367447 caattatatcaactgggagaggaatatcgagaagtttcctttccattaaaagaaaggcaacaataacattgacacgtatatcataacgaaaagtcaacca 24367348  T
Q  311 gtgaat 316  Q
    ||||||    
T  24367347 gtgaat 24367342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 17 - 272
Target Start/End: Complemental strand, 24323249 - 24322993
Alignment:
Q  17 aatatcaccactttttgtacaacaaatgggggaaatgcgaggaatggtatccatgttgagaacaagagttttagtccaagatgactgcactttgtattct 116  Q
    |||||||||||||||||||||||| |   |||||| || | ||||||||  ||  |  |||||||||||||||||| |||||||||||||||||||||||    
T  24323249 aatatcaccactttttgtacaacatacaagggaaacgccatgaatggtaagcaaatcaagaacaagagttttagtcgaagatgactgcactttgtattct 24323150  T
Q  117 ttcatca----cccatatatcaactctatccttaaacct-caaaacccatagactgagaaatcctctaaatacccataaactataatctgtagaccaaaa 211  Q
    |||||||    |||||||||||||| || ||  |  ||| |||||||||||||||| |||||||||||||||||||||||| ||||||| |   | |||     
T  24323149 ttcatcacccacccatatatcaacttta-cccaagtcctccaaaacccatagactgggaaatcctctaaatacccataaaccataatcttt---cgaaac 24323054  T
Q  212 ttcaatatcatttgggagaggaatctctagaagtttcctttccgttaaatgaaaggcaaca 272  Q
     |||||||||| | ||| ||||||||||| || ||| |||||| ||| || ||||||||||    
T  24323053 atcaatatcatctaggaaaggaatctctacaaattttctttccattagatcaaaggcaaca 24322993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 75 - 253
Target Start/End: Complemental strand, 24340832 - 24340654
Alignment:
Q  75 agaacaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaactctatccttaaacctcaaaacccatagactgagaaatc 174  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||  |||||| |  |  || |||||||||||| |||||||    
T  24340832 agaacaagagttttagtccaagatgactgcactttatattctttcattacccagatatcaaccgtatcctcatccaccataacccatagacttagaaatc 24340733  T
Q  175 ctctaaatacccataaactataatctgtagaccaaaattcaatatcatttgggagaggaatctctagaagtttcctttc 253  Q
    ||||| |||||||||||| | || | ||| | | |   |||| ||||| ||||||||||||||||| ||||||||||||    
T  24340732 ctctacatacccataaaccacaaaccgtataaccatggtcaaaatcatctgggagaggaatctctacaagtttcctttc 24340654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 75 - 253
Target Start/End: Complemental strand, 24353197 - 24353019
Alignment:
Q  75 agaacaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaactctatccttaaacctcaaaacccatagactgagaaatc 174  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||  |||||| |  |  || |||||||||||| |||||||    
T  24353197 agaacaagagttttagtccaagatgactgcactttatattctttcattacccagatatcaaccgtatcctcatccaccataacccatagacttagaaatc 24353098  T
Q  175 ctctaaatacccataaactataatctgtagaccaaaattcaatatcatttgggagaggaatctctagaagtttcctttc 253  Q
    ||||| |||||||||||| | || | ||| | | |   |||| ||||| ||||||||||||||||| ||||||||||||    
T  24353097 ctctacatacccataaaccacaaaccgtataaccatggtcaaaatcatctgggagaggaatctctacaagtttcctttc 24353019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 75 - 137
Target Start/End: Complemental strand, 24369862 - 24369800
Alignment:
Q  75 agaacaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaact 137  Q
    |||||||||||||||||||||||||| ||||||   || | || |||||||||||||||||||    
T  24369862 agaacaagagttttagtccaagatgaatgcactccatactattccatcacccatatatcaact 24369800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 106; Significance: 7e-53; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 75 - 330
Target Start/End: Original strand, 42561973 - 42562225
Alignment:
Q  75 agaacaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaactctatccttaaacctcaaaacccatagactgagaaatc 174  Q
    ||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||  |||| |    |||||||| |||||||||||||||||    
T  42561973 agaacaagaatcttagtccaagatgaatgcactttgtattctttcatcacccatatatcaacattatcgtc---cctcaaaatccatagactgagaaatc 42562069  T
Q  175 ctctaaatacccataaactataatctgtagaccaaaattcaatatcatttgggagaggaatctctagaagtttcctttccgttaaatgaaaggcaacaat 274  Q
    ||||||||||||| |||| | || || | ||   | | | ||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  42562070 ctctaaatacccaaaaaccacaacctttggaattataattaatatcaattggaagaagaatctctagaagtttcctttccgttaaatgaaaggcaacaat 42562169  T
Q  275 aacataaacatccataccgtgacgaaaagccaaccagtgaatggcatcattgaaga 330  Q
    |||||   |||  ||| | ||||||| ||||||||||||||| ||  |||||||||    
T  42562170 aacatggtcatatatatcatgacgaagagccaaccagtgaatagccccattgaaga 42562225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 77 - 142
Target Start/End: Complemental strand, 9120182 - 9120117
Alignment:
Q  77 aacaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaactctatc 142  Q
    ||||||||||||  ||||||| || ||||||||||||||||||||||||||||| |||||| ||||    
T  9120182 aacaagagttttcttccaagaggaatgcactttgtattctttcatcacccatatttcaactgtatc 9120117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 92 - 142
Target Start/End: Complemental strand, 179462 - 179412
Alignment:
Q  92 ccaagatgactgcactttgtattctttcatcacccatatatcaactctatc 142  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||| ||||    
T  179462 ccaagatgaatgcactttgtattctttcatcacccatatttcaactgtatc 179412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 236 - 278
Target Start/End: Complemental strand, 29696490 - 29696448
Alignment:
Q  236 ctctagaagtttcctttccgttaaatgaaaggcaacaataaca 278  Q
    ||||||||||||||||||  |||||||||||||||||||||||    
T  29696490 ctctagaagtttcctttcaattaaatgaaaggcaacaataaca 29696448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 279
Target Start/End: Complemental strand, 29688386 - 29688343
Alignment:
Q  236 ctctagaagtttcctttccgttaaatgaaaggcaacaataacat 279  Q
    ||||| ||||||||||||||||||||||||  ||||||||||||    
T  29688386 ctctataagtttcctttccgttaaatgaaatccaacaataacat 29688343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 137
Target Start/End: Complemental strand, 29688550 - 29688488
Alignment:
Q  75 agaacaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaact 137  Q
    ||||| ||||| || |||||||| || ||||| ||||||| ||||||||||||||| ||||||    
T  29688550 agaacgagagtctttgtccaagacgattgcacattgtattttttcatcacccatatttcaact 29688488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 157 - 191
Target Start/End: Original strand, 29712166 - 29712200
Alignment:
Q  157 cccatagactgagaaatcctctaaatacccataaa 191  Q
    |||||||||||||| ||||||||||||||||||||    
T  29712166 cccatagactgagacatcctctaaatacccataaa 29712200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 130
Target Start/End: Complemental strand, 29696654 - 29696602
Alignment:
Q  78 acaagagttttagtccaagatgactgcactttgtattctttcatcacccatat 130  Q
    |||||||| ||||||||||| || ||||| ||||||| || ||||||||||||    
T  29696654 acaagagtcttagtccaagaggattgcacattgtatttttccatcacccatat 29696602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 7e-25; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 78 - 316
Target Start/End: Original strand, 49040795 - 49041032
Alignment:
Q  78 acaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaactctatccttaaacctcaaaacccatagactgagaaatcctc 177  Q
    |||||| ||||| |||||||||| ||||||   ||||||| ||||||||||||||||||  |||  |    || | |||||||||||||||||||||||     
T  49040795 acaagaattttaatccaagatgaatgcactccatattcttccatcacccatatatcaaccgtatgatc---ccccgaaacccatagactgagaaatcctt 49040891  T
Q  178 taaatacccataaactataatctgtagaccaaaattcaatatcatttgggagaggaatctctagaagtttcctttccg-ttaaatgaaagg-caacaata 275  Q
    ||||||||||||||  |  |||  ||||   |  ||||||||||| ||||||||| |||  |||||||| |||||||  |||||||||||| ||||||||    
T  49040892 taaatacccataaatcacgatcattagaatcattttcaatatcatctgggagaggtatcaatagaagttccctttcctattaaatgaaaggacaacaata 49040991  T
Q  276 acataaacatccataccgtgacgaaaagccaaccagtgaat 316  Q
    |||||||||   ||| | ||||||||||||||||| |||||    
T  49040992 acataaacacatatatcatgacgaaaagccaaccaatgaat 49041032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 215 - 316
Target Start/End: Complemental strand, 48863528 - 48863427
Alignment:
Q  215 aatatcatttgggagaggaatctctagaagtttcctttccgttaaatgaaaggcaacaataacataaacatccataccgtgacgaaaagccaaccagtga 314  Q
    |||||||| | ||||||| |||  |||||||| ||||||||||||| ||||||||||||||||||||||| | ||| | ||||||||||||||||| |||    
T  48863528 aatatcatctaggagaggtatcaatagaagttccctttccgttaaacgaaaggcaacaataacataaacacctatatcatgacgaaaagccaaccaatga 48863429  T
Q  315 at 316  Q
    ||    
T  48863428 at 48863427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 75 - 142
Target Start/End: Complemental strand, 7878804 - 7878737
Alignment:
Q  75 agaacaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaactctatc 142  Q
    ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| ||||    
T  7878804 agaacaagagttttaatccaagatgaatgcactttgtattctttcatcacccatatttcaactgtatc 7878737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 75 - 135
Target Start/End: Complemental strand, 7790501 - 7790441
Alignment:
Q  75 agaacaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaa 135  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||    
T  7790501 agaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaa 7790441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 75 - 135
Target Start/End: Complemental strand, 7908723 - 7908663
Alignment:
Q  75 agaacaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaa 135  Q
    ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||    
T  7908723 agaacaagagttttattccaagatgaatgcactttgtattctttcatcacccatatttcaa 7908663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 78 - 139
Target Start/End: Original strand, 48156072 - 48156133
Alignment:
Q  78 acaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaactct 139  Q
    |||||||||||||||||||| || |||||||||||||| |||||||||||||| ||||||||    
T  48156072 acaagagttttagtccaagaagaatgcactttgtattcgttcatcacccatatttcaactct 48156133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 77 - 129
Target Start/End: Complemental strand, 50666734 - 50666682
Alignment:
Q  77 aacaagagttttagtccaagatgactgcactttgtattctttcatcacccata 129  Q
    |||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  50666734 aacaagagttttagtccaagatgaatgcactttgtattcttacatcacccata 50666682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 75 - 130
Target Start/End: Complemental strand, 7771816 - 7771761
Alignment:
Q  75 agaacaagagttttagtccaagatgactgcactttgtattctttcatcacccatat 130  Q
    |||||||||||||||||||| || || |||||||||||||||||||||||||||||    
T  7771816 agaacaagagttttagtccatgacgaatgcactttgtattctttcatcacccatat 7771761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 75 - 142
Target Start/End: Original strand, 7773465 - 7773532
Alignment:
Q  75 agaacaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaactctatc 142  Q
    |||||||||| |||| ||||||| || ||||||||||||||||||||||||||||| |||||| ||||    
T  7773465 agaacaagagatttaatccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatc 7773532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 80 - 139
Target Start/End: Original strand, 48147358 - 48147417
Alignment:
Q  80 aagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaactct 139  Q
    |||||| ||||||||||| || ||||||||||||||||||||||||||||| ||||||||    
T  48147358 aagagtcttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactct 48147417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 78 - 191
Target Start/End: Complemental strand, 48863683 - 48863573
Alignment:
Q  78 acaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaactctatccttaaacctcaaaacccatagactgagaaatcctc 177  Q
    |||||||||||| |||||||||| ||||||  |||||||| |||||||||||| |||||  ||   | |  || | ||||||||||||||||| ||||||    
T  48863683 acaagagttttaatccaagatgaatgcactccgtattcttccatcacccatatgtcaacctta---tgatcccccgaaacccatagactgagagatcctc 48863587  T
Q  178 taaatacccataaa 191  Q
    ||||||||||||||    
T  48863586 taaatacccataaa 48863573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 75 - 136
Target Start/End: Complemental strand, 48864456 - 48864395
Alignment:
Q  75 agaacaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaac 136  Q
    ||||||||| | ||||||||||| || ||||||||||||||||||||||||||||| |||||    
T  48864456 agaacaagaatcttagtccaagacgaatgcactttgtattctttcatcacccatatttcaac 48864395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 75 - 136
Target Start/End: Original strand, 49038518 - 49038579
Alignment:
Q  75 agaacaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaac 136  Q
    ||||||||||| ||||||||||| || || |||||||||||||||||||||||||| |||||    
T  49038518 agaacaagagtcttagtccaagacgaatgaactttgtattctttcatcacccatatttcaac 49038579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 77 - 142
Target Start/End: Original strand, 49043810 - 49043875
Alignment:
Q  77 aacaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaactctatc 142  Q
    ||||||||| |||||||| || || ||||||||||||||||||||||||||||| |||||| ||||    
T  49043810 aacaagagtcttagtccatgacgaatgcactttgtattctttcatcacccatatttcaactatatc 49043875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 75 - 135
Target Start/End: Complemental strand, 7813898 - 7813838
Alignment:
Q  75 agaacaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaa 135  Q
    ||||||||||||||| ||||||| || ||||||||||||||||||| ||||||||| ||||    
T  7813898 agaacaagagttttattccaagacgaatgcactttgtattctttcaacacccatatttcaa 7813838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 75 - 142
Target Start/End: Original strand, 45371714 - 45371781
Alignment:
Q  75 agaacaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaactctatc 142  Q
    ||||||| ||| ||||||||||| || |||||||||||||||||||| |||||||| |||||| ||||    
T  45371714 agaacaaaagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaactgtatc 45371781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 75 - 142
Target Start/End: Complemental strand, 48853102 - 48853035
Alignment:
Q  75 agaacaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaactctatc 142  Q
    ||||||||||| ||||||||||| ||  ||||||||||||||||||| |||||||| |||||| ||||    
T  48853102 agaacaagagtcttagtccaagacgaacgcactttgtattctttcatgacccatatttcaactgtatc 48853035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 78 - 130
Target Start/End: Original strand, 7237386 - 7237438
Alignment:
Q  78 acaagagttttagtccaagatgactgcactttgtattctttcatcacccatat 130  Q
    |||||||||||||||||| | || |||| ||||||||||||||||||||||||    
T  7237386 acaagagttttagtccaaaacgaatgcattttgtattctttcatcacccatat 7237438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 75 - 135
Target Start/End: Complemental strand, 7786885 - 7786825
Alignment:
Q  75 agaacaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaa 135  Q
    ||||||||||| ||| |||||||| | ||||| ||||||||||||||||||||||| ||||    
T  7786885 agaacaagagtcttattccaagataaatgcacgttgtattctttcatcacccatatttcaa 7786825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 75 - 135
Target Start/End: Complemental strand, 7801058 - 7800998
Alignment:
Q  75 agaacaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaa 135  Q
    ||||||||||||||| ||||||| || ||||||||||| ||||||| ||||||||| ||||    
T  7801058 agaacaagagttttattccaagacgaatgcactttgtaatctttcaacacccatatttcaa 7800998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 75 - 137
Target Start/End: Original strand, 45384532 - 45384594
Alignment:
Q  75 agaacaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaact 137  Q
    |||||| |||| || |||||||| || |||||||| |||||||||||||||||||| ||||||    
T  45384532 agaacacgagtctttgtccaagacgaatgcactttatattctttcatcacccatatttcaact 45384594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 85 - 135
Target Start/End: Complemental strand, 48903366 - 48903316
Alignment:
Q  85 ttttagtccaagatgactgcactttgtattctttcatcacccatatatcaa 135  Q
    |||||||||||||  | ||||||||||||||||||||||||||||| ||||    
T  48903366 ttttagtccaagacaaatgcactttgtattctttcatcacccatatttcaa 48903316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 77 - 126
Target Start/End: Original strand, 37826632 - 37826681
Alignment:
Q  77 aacaagagttttagtccaagatgactgcactttgtattctttcatcaccc 126  Q
    ||||||||| ||||||||||| || |||| ||||||||||||||||||||    
T  37826632 aacaagagtcttagtccaagacgaatgcagtttgtattctttcatcaccc 37826681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 86 - 135
Target Start/End: Complemental strand, 47208287 - 47208238
Alignment:
Q  86 tttagtccaagatgactgcactttgtattctttcatcacccatatatcaa 135  Q
    ||||||||||||||| || |||||||||||||||||||||| ||| ||||    
T  47208287 tttagtccaagatgattgtactttgtattctttcatcacccttatttcaa 47208238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 135
Target Start/End: Complemental strand, 7766063 - 7766003
Alignment:
Q  75 agaacaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaa 135  Q
    |||||||| || |||||||| || || | ||||||||||||||||||||||||||| ||||    
T  7766063 agaacaagtgtcttagtccatgacgaatacactttgtattctttcatcacccatatttcaa 7766003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 279
Target Start/End: Complemental strand, 48898999 - 48898954
Alignment:
Q  234 atctctagaagtttcctttccgttaaatgaaaggcaacaataacat 279  Q
    |||||||  ||||||||||||||||||| |||||||||||| ||||    
T  48898999 atctctaacagtttcctttccgttaaatcaaaggcaacaatgacat 48898954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 142
Target Start/End: Original strand, 49048197 - 49048262
Alignment:
Q  77 aacaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaactctatc 142  Q
    ||||| ||| |||||||| || || |||||||| || ||||||||||||||||| |||||| ||||    
T  49048197 aacaaaagtcttagtccatgacgaatgcactttatactctttcatcacccatatttcaactatatc 49048262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 142
Target Start/End: Original strand, 45365875 - 45365927
Alignment:
Q  90 gtccaagatgactgcactttgtattctttcatcacccatatatcaactctatc 142  Q
    |||||||| ||  ||||||| |||||||||||||||||||| |||||| ||||    
T  45365875 gtccaagacgaacgcactttatattctttcatcacccatatttcaactgtatc 45365927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 82 - 122
Target Start/End: Original strand, 48735058 - 48735098
Alignment:
Q  82 gagttttagtccaagatgactgcactttgtattctttcatc 122  Q
    |||||||||||||||| || | |||||||||||||||||||    
T  48735058 gagttttagtccaagacgaattcactttgtattctttcatc 48735098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 127
Target Start/End: Complemental strand, 48870981 - 48870929
Alignment:
Q  75 agaacaagagttttagtccaagatgactgcactttgtattctttcatcaccca 127  Q
    ||||||||||| || |||||||| || | |||||||||||| |||||||||||    
T  48870981 agaacaagagtctttgtccaagacgagttcactttgtattcattcatcaccca 48870929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 127
Target Start/End: Complemental strand, 48876285 - 48876233
Alignment:
Q  75 agaacaagagttttagtccaagatgactgcactttgtattctttcatcaccca 127  Q
    ||||||||||| || |||||||| || | |||||||||||| |||||||||||    
T  48876285 agaacaagagtctttgtccaagacgagttcactttgtattcattcatcaccca 48876233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 127
Target Start/End: Complemental strand, 48886667 - 48886615
Alignment:
Q  75 agaacaagagttttagtccaagatgactgcactttgtattctttcatcaccca 127  Q
    ||||||||||| || |||||||| || | |||||||||||| |||||||||||    
T  48886667 agaacaagagtctttgtccaagacgagttcactttgtattcattcatcaccca 48886615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 78 - 135
Target Start/End: Original strand, 11024146 - 11024203
Alignment:
Q  78 acaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaa 135  Q
    |||||||| ||||||||||| || |||||||||||||||||||| |||||||| ||||    
T  11024146 acaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaa 11024203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 78 - 137
Target Start/End: Original strand, 11015134 - 11015193
Alignment:
Q  78 acaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaact 137  Q
    ||||||||||||  |||||| || |||||||||||||||||||| |||||||| ||||||    
T  11015134 acaagagttttaacccaagacgaatgcactttgtattctttcataacccatatttcaact 11015193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 78 - 135
Target Start/End: Original strand, 11005571 - 11005628
Alignment:
Q  78 acaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaa 135  Q
    |||||||  ||||||||||| || |||||||||||||||||||| |||||||| ||||    
T  11005571 acaagagccttagtccaagacgaatgcactttgtattctttcataacccatatttcaa 11005628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 142
Target Start/End: Original strand, 47451570 - 47451607
Alignment:
Q  105 actttgtattctttcatcacccatatatcaactctatc 142  Q
    |||||||||||||||||||||||||| |||||| ||||    
T  47451570 actttgtattctttcatcacccatatttcaactatatc 47451607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 75 - 142
Target Start/End: Complemental strand, 48884245 - 48884178
Alignment:
Q  75 agaacaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaactctatc 142  Q
    ||||||||||| |||||||||||    |||||||||||||||||||||||| |||| |||||| ||||    
T  48884245 agaacaagagtcttagtccaagacatatgcactttgtattctttcatcacctatatttcaactttatc 48884178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 130
Target Start/End: Original strand, 30130916 - 30130957
Alignment:
Q  89 agtccaagatgactgcactttgtattctttcatcacccatat 130  Q
    |||||||||||| |||||| ||||||||| ||||||||||||    
T  30130916 agtccaagatgaatgcactgtgtattcttgcatcacccatat 30130957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 142
Target Start/End: Complemental strand, 21016237 - 21016175
Alignment:
Q  80 aagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaactctatc 142  Q
    |||||| ||||||||||| || || ||||||||||||||||| |||||||| |||||| ||||    
T  21016237 aagagtcttagtccaagacgaatgtactttgtattctttcataacccatatttcaactatatc 21016175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 14197337 - 14197377
Alignment:
Q  89 agtccaagatgactgcactttgtattctttcatcacccata 129  Q
    |||||||||||| |||| |||||||||||||||||||||||    
T  14197337 agtccaagatgaatgcattttgtattctttcatcacccata 14197377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 135
Target Start/End: Complemental strand, 15349304 - 15349244
Alignment:
Q  75 agaacaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaa 135  Q
    ||||||||| | || |||||||| || | ||||||||||||||||||||||||||| ||||    
T  15349304 agaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaa 15349244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 12195742 - 12195683
Alignment:
Q  78 acaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaact 137  Q
    |||||||| |||||||||||||| ||   |||||||||||||||| ||||||| ||||||    
T  12195742 acaagagtcttagtccaagatgattgttgtttgtattctttcatctcccatatttcaact 12195683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 12440170 - 12440111
Alignment:
Q  78 acaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaact 137  Q
    |||||||| |||||||||||||| ||   |||||||||||||||| ||||||| ||||||    
T  12440170 acaagagtcttagtccaagatgattgttgtttgtattctttcatctcccatatttcaact 12440111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 87 - 137
Target Start/End: Original strand, 4031578 - 4031628
Alignment:
Q  87 ttagtccaagatgactgcactttgtattctttcatcacccatatatcaact 137  Q
    ||||||||||| || |||| ||||||||||||||| |||||||| ||||||    
T  4031578 ttagtccaagacgaatgcattttgtattctttcataacccatatttcaact 4031628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 102 - 140
Target Start/End: Original strand, 4962186 - 4962224
Alignment:
Q  102 tgcactttgtattctttcatcacccatatatcaactcta 140  Q
    |||| |||||||||||||||||||||||| |||||||||    
T  4962186 tgcagtttgtattctttcatcacccatatttcaactcta 4962224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 213 - 265
Target Start/End: Original strand, 10178221 - 10178273
Alignment:
Q  213 tcaatatcatttgggagaggaatctctagaagtttcctttccgttaaatgaaa 265  Q
    |||| ||||||||||| | |||| ||||||||||||||||  |||||||||||    
T  10178221 tcaacatcatttgggaaaagaatatctagaagtttcctttttgttaaatgaaa 10178273  T

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