View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2933_low_4 (Length: 365)
Name: NF2933_low_4
Description: NF2933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2933_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 19177282 - 19176937
Alignment:
| Q |
1 |
cattacctgctatggagataaagaatccagaacacctcgtggtaactcgctaaaccaagccttcaagaatacaagaacaccaaattaaattatcaaaact |
100 |
Q |
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| T |
19177282 |
cattacctgctctggagataaagaatccagaacacctcttggtaactccctaaaccaagccttcaagaatacacgaacaccaaattaaattatcaaaact |
19177183 |
T |
|
| Q |
101 |
tacatcaagtacataatattaaaactaatattacacattagatgtgataaaatagatatgcaattatgcgcaatagaaaagtgcatagacaaaaacgtat |
200 |
Q |
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| T |
19177182 |
tacatcaagtacataatattaaaactaatattacacattagatgtgataaaatagatacgcaattaagcgcaatagaaaagtgcatagacaaaaacgtat |
19177083 |
T |
|
| Q |
201 |
aaaatgataatgcaatagcacaagtagtatttcacagcatgatgttaccatgtaacatatcatcttcattgtaataccttaatcaatcctgccaaacaat |
300 |
Q |
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| T |
19177082 |
aaaatgataatgcaatagcacaagtagtatttcacagcatgatgttaccatgtaacatatcgtcttcattgtaataccttaatcaatcctgccaaacaat |
19176983 |
T |
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| Q |
301 |
gtacatcaatgtcttctgcgaccactcctttatttaattgatccct |
346 |
Q |
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| T |
19176982 |
gtacatcaatgtcttctgggaccactcctttatttaattgatccct |
19176937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 27036172 - 27035828
Alignment:
| Q |
1 |
cattacctgctatggagataaagaatccagaacacctcgtggtaactcgctaaaccaagccttcaagaatacaagaacaccaaattaaattatcaaaact |
100 |
Q |
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||||||||||| ||||||||||||||||||||||||| | ||| ||| |||||||||||||| |||||||||| |||| |||| ||||||||||||| | |
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| T |
27036172 |
cattacctgctctggagataaagaatccagaacacctt-tcgtagctccctaaaccaagcctttaagaatacaaaaacatcaaactaaattatcaaaatt |
27036074 |
T |
|
| Q |
101 |
tacatcaagtacataatattaaaactaatattacacattagatgtgataaaatagatatgcaattatgcgcaatagaaaagtgcatagacaaaaacgtat |
200 |
Q |
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|||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| || ||| |||||||||||||| ||||||||||| |||||| |
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| T |
27036073 |
tacatcaagtacataatattaaaacttatattacacaatagatgtgataaaatagatacacagttaagcgcaatagaaaagcgcatagacaaacacgtat |
27035974 |
T |
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| Q |
201 |
aaaatgataatgcaatagcacaagtagtatttcacagcatgatgttaccatgtaacatatcatcttcattgtaataccttaatcaatcctgccaaacaat |
300 |
Q |
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| T |
27035973 |
ataatgataatgcaatagcacaagtagtatttctcagcatgatattaccatgtaacgtatcatcttcattgtaataccttaatcaatcctgtcaaacaat |
27035874 |
T |
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| Q |
301 |
gtacatcaatgtcttctgcgaccactcctttatttaattgatccct |
346 |
Q |
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|||| || |||||||||| |||||| ||||||||||||| |||||| |
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| T |
27035873 |
gtacgtctatgtcttctgggaccacgcctttatttaattcatccct |
27035828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 316
Target Start/End: Complemental strand, 36406745 - 36406703
Alignment:
| Q |
274 |
ataccttaatcaatcctgccaaacaatgtacatcaatgtcttc |
316 |
Q |
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| T |
36406745 |
ataccttaattagtcctgccagacaatgtacatcaatgtcttc |
36406703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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