View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2933_low_5 (Length: 331)
Name: NF2933_low_5
Description: NF2933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2933_low_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 6 - 311
Target Start/End: Original strand, 37623946 - 37624253
Alignment:
| Q |
6 |
aggagcagagataagagcactcgtacaatacaatggtttttactgaacttagagtttcatgtctcacaagtgcactttcatgttgcaattcccggtcttc |
105 |
Q |
| |
|
|||| |||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37623946 |
aggaacagaaataagagtactcgtacaatacaatggttgttactgaacttagagtttcatgtctcacaagtgcactttcatgttgcaattcccggtcttc |
37624045 |
T |
|
| Q |
106 |
aacttatcattcacggatcttattgctacaaaaatcaaaaccagggttcatgcatcgtaaactatcgatcaattccactgctctcaatgacaaggtatat |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37624046 |
aacttatcattcacggatcttattgctacaaaaatcaaaaccagggttcatgcatcgtaaactatcgatcaattccactgctctcaatgacaaggtatat |
37624145 |
T |
|
| Q |
206 |
atcttttagtaata--nnnnnnnnnnnnnnnnnnatgtacactactagtactagcactacacctcttaagtcaaccattaaatgcaattgcaacatctaa |
303 |
Q |
| |
|
|| ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37624146 |
atgttttagtaatatctctctccctctctctctcatgtacactactagtactagcgctacacctcttaagtcaaccattaaatgcaattgcaacatctaa |
37624245 |
T |
|
| Q |
304 |
atgacaag |
311 |
Q |
| |
|
|||||||| |
|
|
| T |
37624246 |
atgacaag |
37624253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 32 - 202
Target Start/End: Original strand, 37615457 - 37615627
Alignment:
| Q |
32 |
aatacaatggtttttactgaacttagagtttcatgtctcacaagtgcactttcatgttgcaattcccggtcttcaacttatcattcacggatcttattgc |
131 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| ||||||||| ||||| | |||| |||| | |||| |||||||| ||||| ||||||| | |
|
|
| T |
37615457 |
aatacaatggcttttactgaacttagagtttcatatctcacaagcacacttgctcgttgtaattttggaacttctacttatcaatcacgcatcttatctc |
37615556 |
T |
|
| Q |
132 |
tacaaaaatcaaaaccagggttcatgcatcgtaaactatcgatcaattccactgctctcaatgacaaggta |
202 |
Q |
| |
|
|||||||||||| || || | |||||| ||||| |||||||||| |||| |||||||||||| |||||| |
|
|
| T |
37615557 |
tacaaaaatcaagttcaaggattatgcatagtaaattatcgatcaagtccattgctctcaatgagaaggta |
37615627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University