View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2933_low_6 (Length: 319)

Name: NF2933_low_6
Description: NF2933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2933_low_6
NF2933_low_6
[»] chr3 (8 HSPs)
chr3 (106-306)||(24982044-24982244)
chr3 (19-306)||(24919784-24920070)
chr3 (58-306)||(25085036-25085280)
chr3 (103-306)||(24497240-24497443)
chr3 (38-306)||(24923378-24923644)
chr3 (99-306)||(31825534-31825741)
chr3 (107-306)||(21584582-21584781)
chr3 (107-144)||(14858633-14858670)
[»] chr7 (4 HSPs)
chr7 (110-306)||(10575385-10575581)
chr7 (115-301)||(39954838-39955024)
chr7 (162-306)||(354402-354547)
chr7 (198-306)||(10580785-10580893)
[»] chr8 (1 HSPs)
chr8 (107-306)||(14261017-14261216)
[»] chr2 (1 HSPs)
chr2 (138-280)||(41027596-41027738)
[»] chr4 (3 HSPs)
chr4 (132-286)||(22898571-22898725)
chr4 (132-286)||(22950239-22950393)
chr4 (115-301)||(53328717-53328903)
[»] chr5 (1 HSPs)
chr5 (123-286)||(26358549-26358712)


Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 106 - 306
Target Start/End: Complemental strand, 24982244 - 24982044
Alignment:
Q  106 ttcttcttcaaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagt 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24982244 ttcttcttcaaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagt 24982145  T
Q  206 gtatgtaactgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacctctt 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  24982144 gtatgtaactgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatatatcaaaccactgattctcttaacaccacctctt 24982045  T
Q  306 c 306  Q
    |    
T  24982044 c 24982044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 19 - 306
Target Start/End: Original strand, 24919784 - 24920070
Alignment:
Q  19 aactttctatggtgcaattgcatattcaaattaaagtcttaaggcaaaagaaaataaaaa-taaactaaagagtgcttctacttctttttcttcttcaac 117  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||| ||||||||| |||| | |||  | |||||    
T  24919784 aactttctaaggtgcaattgcatattcaaattaaagtct-aaggcaaaataaaataaaaaataaactaaa-agtgcttcttcttcatcttcagcatcaac 24919881  T
Q  118 caccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtatgtaactgc 217  Q
    | ||||| ||||||||||||||||| || ||||||||||||||||| ||||||||||| || || ||||||||||||||||||||||||||||| || ||    
T  24919882 ctccgaatccatagagggttcttccctgcctcttcaaagcatagacgacatccatggctgtcactgtcttcctcctagcgtgctcagtgtatgtcacagc 24919981  T
Q  218 atcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacctcttc 306  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  24919982 atcacgaatgacattctctaagaagatcttcaagacacctctggtttcttcatagatcaaaccgctgattctcttcacaccacctcttc 24920070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 58 - 306
Target Start/End: Complemental strand, 25085280 - 25085036
Alignment:
Q  58 taaggcaaaagaaaataa-aaataaactaaagagtgcttctacttctttttcttcttcaaccaccgaaaccatagagggttcttccttgtctcttcaaag 156  Q
    |||||||||||||||||| ||||||||||||||||| |||| ||      |||||||||||| || |||||||||||||||||||| |||||||||||||    
T  25085280 taaggcaaaagaaaataacaaataaactaaagagtgtttcttctg-----tcttcttcaacctccaaaaccatagagggttcttccctgtctcttcaaag 25085186  T
Q  157 catagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtatgtaactgcatcacggatgacattctccaagaagatcttcaagacacc 256  Q
    ||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  25085185 catagacaacatccatggctgtcacagtcttcctccttgcgtgctcagtgtatgtaactgcatcacggatcacattctccaagaagatcttcaagacacc 25085086  T
Q  257 tctggtttcttcatagatcaaaccactgattctcttaacaccacctcttc 306  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  25085085 tctggtttcttcatatatcaaaccactgattctcttcacaccacctcttc 25085036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 103 - 306
Target Start/End: Original strand, 24497240 - 24497443
Alignment:
Q  103 tttttcttcttcaaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctc 202  Q
    ||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||    
T  24497240 tttttcttcatcaacctccaaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggctgtcacagtcttcctccttgcgtgctc 24497339  T
Q  203 agtgtatgtaactgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacct 302  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  24497340 agtgtatgtaactgcatcacggatcacattttccaagaagatcttcaagacacctctggtttcttcatagatcaatccactgattctcttaacaccacct 24497439  T
Q  303 cttc 306  Q
    ||||    
T  24497440 cttc 24497443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 38 - 306
Target Start/End: Original strand, 24923378 - 24923644
Alignment:
Q  38 gcatattcaaatta-aagtcttaaggcaaaagaaaataaaaataaactaaagagtgcttctacttctttttcttcttcaaccaccgaaaccatagagggt 136  Q
    |||||||||||||| ||  || |||| |||||| || ||||||||||||||||||| |||| |||| | ||||||   |||| || || |||||||||||    
T  24923378 gcatattcaaattacaaagctaaaggaaaaagataaaaaaaataaactaaagagtgtttcttcttcatattcttc---aacctccaaatccatagagggt 24923474  T
Q  137 tcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtatgtaactgcatcacggatgacattctcc 236  Q
    |||||| |||||||||||||||||||||||||||||||| || || ||||||||||| ||||||||||||||||| || |||||||| ||||||||||||    
T  24923475 tcttccctgtctcttcaaagcatagacaacatccatggctgtcactgtcttcctccttgcgtgctcagtgtatgtcacagcatcacgaatgacattctcc 24923574  T
Q  237 aagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacctcttc 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24923575 aagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacctcttc 24923644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 99 - 306
Target Start/End: Original strand, 31825534 - 31825741
Alignment:
Q  99 cttctttttcttcttcaaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgt 198  Q
    |||||| |||||| |||||| ||||| ||||||||||||||||| || |||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  31825534 cttcttcttcttcatcaacctccgaatccatagagggttcttccctgcctcttcaaagcatagacaacatccatcgcggtaactgtcttcctcctagcgt 31825633  T
Q  199 gctcagtgtatgtaactgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacacc 298  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||    
T  31825634 gctcagtgtatgtgaccgcatcacggatgacattctccaagaagatcttcaagacacctctagtttcttcatagatcaaaccactgatcctcttcacacc 31825733  T
Q  299 acctcttc 306  Q
    ||||||||    
T  31825734 acctcttc 31825741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 107 - 306
Target Start/End: Original strand, 21584582 - 21584781
Alignment:
Q  107 tcttcttcaaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtg 206  Q
    |||||||||||| ||||| ||||| || ||||||||||| |||||||||||||| ||||||||||| || || |||||||||||||| || |||||||||    
T  21584582 tcttcttcaacctccgaatccataaagcgttcttccttgcctcttcaaagcataaacaacatccatagcagtcacagtcttcctccttgcatgctcagtg 21584681  T
Q  207 tatgtaactgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacctcttc 306  Q
    || ||||| |||||||| || |||||||||||||| ||||| |  || ||||| ||||| ||||| ||||||||||||||||||||||||||||||||||    
T  21584682 tacgtaaccgcatcacgaatcacattctccaagaaaatcttaagaactcctcttgtttcctcataaatcaaaccactgattctcttaacaccacctcttc 21584781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 144
Target Start/End: Original strand, 14858633 - 14858670
Alignment:
Q  107 tcttcttcaaccaccgaaaccatagagggttcttcctt 144  Q
    ||||||||||||||| ||||| ||||||||||||||||    
T  14858633 tcttcttcaaccaccaaaaccgtagagggttcttcctt 14858670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 101; Significance: 5e-50; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 110 - 306
Target Start/End: Complemental strand, 10575581 - 10575385
Alignment:
Q  110 tcttcaaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtat 209  Q
    |||||||||||||||||||||||||||||||||||||||||| |  || || ||||||||||| || || ||||| |||||||| || |||||||||||     
T  10575581 tcttcaaccaccgaaaccatagagggttcttccttgtctcttaagcgcgtaaacaacatccatagcagtcacagttttcctcctcgcatgctcagtgtaa 10575482  T
Q  210 gtaactgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacctcttc 306  Q
    ||||| ||||| |  || ||||||||||||||||||||||| |||||||| ||||| ||||||||||| ||||||||||| || ||||| |||||||    
T  10575481 gtaacagcatctcttataacattctccaagaagatcttcaacacacctcttgtttcctcatagatcaatccactgattcttttcacacctcctcttc 10575385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 115 - 301
Target Start/End: Original strand, 39954838 - 39955024
Alignment:
Q  115 aaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtatgtaac 214  Q
    ||||||||||||| ||||| || ||||| || ||||| | |||||| ||||||||||||||||||||||| ||||||||||| ||||||||||| |||||    
T  39954838 aaccaccgaaaccgtagagagtccttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaac 39954937  T
Q  215 tgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacc 301  Q
     |||||||| || |||||||| |  |||||||| |  ||||| |  || ||||| ||||| | ||| ||||||||||| ||||||||    
T  39954938 agcatcacgaatcacattctcaagaaagatcttgagaacaccgcgagtctcttcgtagatgagaccgctgattctcttcacaccacc 39955024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 162 - 306
Target Start/End: Complemental strand, 354547 - 354402
Alignment:
Q  162 acaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtatgtaactgcatcacggatgacattctccaagaagatcttcaagacacctctgg 261  Q
    ||||||||||| || || | |||||||||||| || ||||||||||| ||||| |||||||  ||  |||||| |||||| |||||||| || |||||      
T  354547 acaacatccatagcagtcagagtcttcctccttgcatgctcagtgtaagtaacagcatcacaaatctcattctgcaagaaaatcttcaacactcctctta 354448  T
Q  262 tttcttcataga-tcaaaccactgattctcttaacaccacctcttc 306  Q
    |||| ||||||| | ||||||||||| ||||| |||||||||||||    
T  354447 tttcctcatagattaaaaccactgatcctcttcacaccacctcttc 354402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 198 - 306
Target Start/End: Complemental strand, 10580893 - 10580785
Alignment:
Q  198 tgctcagtgtatgtaactgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacac 297  Q
    ||||||||||| ||||| |||||| | ||   ||||| |||||| |||||||| |  |||||  |||| |||||||||||||||||||| ||||| ||||    
T  10580893 tgctcagtgtaagtaacagcatcaagaatcttattctgcaagaaaatcttcaacagtcctcttatttcctcatagatcaaaccactgatcctcttcacac 10580794  T
Q  298 cacctcttc 306  Q
    || ||||||    
T  10580793 caactcttc 10580785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 107 - 306
Target Start/End: Original strand, 14261017 - 14261216
Alignment:
Q  107 tcttcttcaaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtg 206  Q
    |||||||||||| ||||||||||| |  || ||||||||||||||||| ||||| ||||||||||| || ||||| ||||||||||| || || |||||     
T  14261017 tcttcttcaacctccgaaaccatacaaagtccttccttgtctcttcaacgcataaacaacatccatagcagtaaccgtcttcctcctcgcatgttcagta 14261116  T
Q  207 tatgtaactgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacctcttc 306  Q
    || ||||| ||||| |  || |||||||||||||| |||||||| ||||| |  ||||||||||| ||||| || ||||||||||| ||||| |||||||    
T  14261117 tacgtaacagcatctcttatcacattctccaagaaaatcttcaacacaccgcgagtttcttcataaatcaacccgctgattctcttcacacctcctcttc 14261216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 138 - 280
Target Start/End: Complemental strand, 41027738 - 41027596
Alignment:
Q  138 cttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtatgtaactgcatcacggatgacattctcca 237  Q
    ||||||||||||||||| ||||| ||||||||||| || ||||||||||| |||||||||||||| ||||| ||||| |||||||| || ||||||||||    
T  41027738 cttccttgtctcttcaatgcataaacaacatccatagcagtaacagtctttctcctagcgtgctctgtgtaagtaacagcatcacgaataacattctcca 41027639  T
Q  238 agaagatcttcaagacacctctggtttcttcatagatcaaacc 280  Q
    | ||||||||||| || || |  || ||||| |||||||||||    
T  41027638 aaaagatcttcaacacgccacgtgtctcttcgtagatcaaacc 41027596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 8e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 132 - 286
Target Start/End: Complemental strand, 22898725 - 22898571
Alignment:
Q  132 agggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtatgtaactgcatcacggatgacat 231  Q
    ||||||||||| |||||||| |  ||||| || |||||||| || ||||| |||||||| ||||||||||||||||| || || ||||| |  || ||||    
T  22898725 agggttcttccctgtctcttgagggcataaaccacatccatagcagtaaccgtcttccttctagcgtgctcagtgtaagtcacagcatctctaatcacat 22898626  T
Q  232 tctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgat 286  Q
    ||||||| || |||||||| || || |  || || ||||| ||||||||||||||    
T  22898625 tctccaaaaatatcttcaacacgccacgtgtctcctcataaatcaaaccactgat 22898571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 132 - 286
Target Start/End: Complemental strand, 22950393 - 22950239
Alignment:
Q  132 agggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtatgtaactgcatcacggatgacat 231  Q
    ||||||||||| |||||||| |  ||||| || |||||||| || ||||| |||||||| ||||||||||||||||| || || ||||| |  || ||||    
T  22950393 agggttcttccctgtctcttgagggcataaaccacatccatagcagtaaccgtcttccttctagcgtgctcagtgtaagtcacagcatctctaatcacat 22950294  T
Q  232 tctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgat 286  Q
    ||||||| || |||||||| || || |  || || ||||| ||||||||||||||    
T  22950293 tctccaaaaatatcttcaacacgccacgtgtctcctcataaatcaaaccactgat 22950239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 301
Target Start/End: Complemental strand, 53328903 - 53328717
Alignment:
Q  115 aaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtatgtaac 214  Q
    |||| |||||||| || || || ||||| || ||||| | ||| || ||||||||||| || ||||||||||| |  | ||| ||||| |||||||| ||    
T  53328903 aacccccgaaaccgtaaagagtccttccctgcctcttgagagcgtaaacaacatccattgcagtaacagtcttacggcgagcatgctctgtgtatgtgac 53328804  T
Q  215 tgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacc 301  Q
     |||||||| || |||||||| |  |||||||| |  || || |  |||||||||||||| || |||||||| | ||| ||||||||    
T  53328803 agcatcacgaatcacattctcaagaaagatcttgagaacgccacgagtttcttcatagattaagccactgatacgcttcacaccacc 53328717  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 123 - 286
Target Start/End: Original strand, 26358549 - 26358712
Alignment:
Q  123 aaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtatgtaactgcatcac 222  Q
    |||||||| ||||| |||||||| ||||| |  ||||| ||||||||||| || ||||| || || |  | ||| || |||||||| || || |||||||    
T  26358549 aaaccataaagggtccttccttgcctcttgagcgcataaacaacatccatagcagtaactgttttgcgacgagcatgttcagtgtaagtgacagcatcac 26358648  T
Q  223 ggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgat 286  Q
    | || |||||||| |  || ||||| |  ||||| |  |||||||||||||||| |||||||||    
T  26358649 gaataacattctcaagaaatatcttgagaacaccacgagtttcttcatagatcagaccactgat 26358712  T

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