View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2933_low_7 (Length: 243)
Name: NF2933_low_7
Description: NF2933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2933_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 580918 - 581140
Alignment:
| Q |
1 |
caatttggattcatcttctgaggaactttgaactggagcttgtgtcacctttccctgagattgattggaatgccatggttgttggagtgaaaggaaaagt |
100 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
580918 |
caatttggactcatcttctgaggaactttgaactggagcttgtgtcacctttccctgagattgattggaatgccatggttgttggagtgaaaggaaaagt |
581017 |
T |
|
| Q |
101 |
tatggtccgatacaagcggagggagctttctgttaatcaatagggccatgatatgctccagtgtactgcttggatttcnnnnnnngaagcttttcttgtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
581018 |
tatggtccgatacaagcggagggagctttctgttaatcaatagggccatgatatgctccagtgtactgcttggatttctttttttgaagcttttcttgtt |
581117 |
T |
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| Q |
201 |
agcattattgattctgcttcatt |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
581118 |
agcattattgattctgcttcatt |
581140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 591509 - 591287
Alignment:
| Q |
1 |
caatttggattcatcttctgaggaactttgaactggagcttgtgtcacctttccctgagattgattggaatgccatggttgttggagtgaaaggaaaagt |
100 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
591509 |
caatttggactcatcttctgaggaactttgaactggagcttgtgtcacctttccctgagattgattggaatgccatggttgttggagtgaaaggaaaagt |
591410 |
T |
|
| Q |
101 |
tatggtccgatacaagcggagggagctttctgttaatcaatagggccatgatatgctccagtgtactgcttggatttcnnnnnnngaagcttttcttgtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
591409 |
tatggtccgatacaagcggagggagctttctgttaatcaatagggccatgatatgctccagtgtactgcttggatttctttttttgaagcttttcttgtt |
591310 |
T |
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| Q |
201 |
agcattattgattctgcttcatt |
223 |
Q |
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||||||||||||| ||||||||| |
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| T |
591309 |
agcattattgattgtgcttcatt |
591287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 111 - 178
Target Start/End: Original strand, 37434629 - 37434696
Alignment:
| Q |
111 |
tacaagcggagggagctttctgttaatcaatagggccatgatatgctccagtgtactgcttggatttc |
178 |
Q |
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|||||||||||||||||||||||||| ||||||| | |||||||| | |||||||||||||||||||| |
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| T |
37434629 |
tacaagcggagggagctttctgttaaacaataggactatgatatgtttcagtgtactgcttggatttc |
37434696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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