View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2933_low_8 (Length: 239)
Name: NF2933_low_8
Description: NF2933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2933_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 28980501 - 28980724
Alignment:
| Q |
1 |
cactaatcagatgaaaggtaactaccacaaattcatttgttttccgaattcattttacagatgtttgttgttccattcatacgctaactaattatgtttg |
100 |
Q |
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| T |
28980501 |
cactaatcagatgaaaggtaaacaccacgaattcattt-ttttccgaattcattttacagatgtttgctgttccattcatacgctaactaattatgtttg |
28980599 |
T |
|
| Q |
101 |
tctgtttgattccctttatgcatatcaattcaggacaattcgaccccagaggtgtgcaaggctgtgagatatgacttggcgaagcttaggacattccaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28980600 |
tctgtttgattccctttatgcatatcaattcaggacaattcgaccccagaggtgtgcaaggctgtgagatatgacttggcgaagcttaggacattccaaa |
28980699 |
T |
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| Q |
201 |
tggaatatgacattgctgttgtaag |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
28980700 |
tggaatatgacattgctgttgtaag |
28980724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 11 - 225
Target Start/End: Complemental strand, 21679858 - 21679643
Alignment:
| Q |
11 |
atgaaaggtaactaccacaaattcatttgttttccgaattcattttacagatgtttgttgttccattcatacgctaactaattatgtttgtctgtttgat |
110 |
Q |
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|||||||||||| ||||| |||| |||| || |||||||||||||| ||||| | || ||||||||||||||||| ||||||||||||||||| | |
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| T |
21679858 |
atgaaaggtaaccaccaccaattgattt-ttgtccgaattcattttgcagatctgcatttttccattcatacgctaatgcattatgtttgtctgttttgt |
21679760 |
T |
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| Q |
111 |
t--ccctttatgcatatcaattcaggacaattcgaccccagaggtgtgcaaggctgtgagatatgacttggcgaagcttaggacattccaaatggaatat |
208 |
Q |
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| T |
21679759 |
tttcccataatgtatatcagttcaggacaattcgaccccagaggtgtgcatggctgtgagatctaacttggcgaagcttaggacattccaaatggaatat |
21679660 |
T |
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| Q |
209 |
gacattgctgttgtaag |
225 |
Q |
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|||||||||| |||||| |
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| T |
21679659 |
gacattgctgctgtaag |
21679643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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