View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2933_low_9 (Length: 225)
Name: NF2933_low_9
Description: NF2933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2933_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 12 - 207
Target Start/End: Complemental strand, 28003957 - 28003758
Alignment:
| Q |
12 |
agcagaacctgtgccacctgagtcacatatcatataatgtaacataatgttaaatctcataatgaaaaaccatataacaaaacattaatga----tgatt |
107 |
Q |
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| T |
28003957 |
agcagaacttgagccacctgagtcacatatcatataatgtaacataatgttaaatctcataatgaaaaaccatataacaatatataaaaacacattaatt |
28003858 |
T |
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| Q |
108 |
gatgagaaactaacctggttggaagcacaactaaaccaagcatcataagcagaaccaccatgccataagaagtttgataacttggactttatgtcctgtg |
207 |
Q |
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| T |
28003857 |
gatgagaaactaacctggttggaagcacagctaaaccaagcatcataagcagaaccaccatgccataagaagtttgataacttggactttatgtcctgtg |
28003758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 178
Target Start/End: Complemental strand, 4531867 - 4531818
Alignment:
| Q |
129 |
gaagcacaactaaaccaagcatcataagcagaaccaccatgccataagaa |
178 |
Q |
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| T |
4531867 |
gaagcacaactaaaccatgcatcccaaacagaaccaccatgccataagaa |
4531818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 187
Target Start/End: Original strand, 32804959 - 32805017
Alignment:
| Q |
129 |
gaagcacaactaaaccaagcatcataagcagaaccaccatgccataagaagtttgataa |
187 |
Q |
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| T |
32804959 |
gaagcacaactaaaccaagcatcatagacagaaccaccatgccagaagaacttagataa |
32805017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 172
Target Start/End: Complemental strand, 35320998 - 35320958
Alignment:
| Q |
132 |
gcacaactaaaccaagcatcataagcagaaccaccatgcca |
172 |
Q |
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| T |
35320998 |
gcacagctaaaccaagcatcataaacagaaccaccatgcca |
35320958 |
T |
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