View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2934_high_1 (Length: 415)

Name: NF2934_high_1
Description: NF2934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2934_high_1
NF2934_high_1
[»] chr8 (2 HSPs)
chr8 (19-405)||(27813415-27813803)
chr8 (19-135)||(25640836-25640953)
[»] chr2 (4 HSPs)
chr2 (19-135)||(30268883-30269000)
chr2 (19-195)||(31481696-31481873)
chr2 (19-135)||(31332229-31332346)
chr2 (19-135)||(31338959-31339076)
[»] chr7 (1 HSPs)
chr7 (19-135)||(4683206-4683323)
[»] chr4 (2 HSPs)
chr4 (19-135)||(53302209-53302326)
chr4 (14-135)||(47064137-47064259)
[»] chr3 (1 HSPs)
chr3 (19-135)||(7404207-7404324)
[»] chr6 (2 HSPs)
chr6 (19-67)||(30824851-30824899)
chr6 (267-300)||(6761839-6761872)


Alignment Details
Target: chr8 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 19 - 405
Target Start/End: Complemental strand, 27813803 - 27813415
Alignment:
Q  19 aaacttagggttgaagaaatggatatttgttcctcgatggtacaaaagccggtcagttttctgtcacacacaacaaaactatcgctgcttcagctccgac 118  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||| ||||| |||||| ||||||| |||||||||||||||||    
T  27813803 aaacttagggttgaagaaatggatatttgtttctcgatggtacaaatgccgatcagttttccgtcacgcacaaccaaactattgctgcttcagctccgac 27813704  T
Q  119 agtggtggctatcagagacgaaaggatacttgtgtacattggtcggggcagattttgttatgtggtgccactgcagtagataactttacctgaaatattg 218  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  27813703 agtggtggctatcagagccgaaaggatacttgtgtacattggtcggggctgattttgttatgtagtgccactgcagtagataactttacctgaaatattg 27813604  T
Q  219 ataactttctgaaatagttttaagaggagctattagaaacctctaatagcgtaaaggtatcctttctgtttgcattgataatattgcatac-----tttt 313  Q
    |||||||||||||||||||||||   ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||     ||||    
T  27813603 ataactttctgaaatagttttaa---gagctattagaaacctccaatagtgtaaaggtatcctttctgtttgcattgataatattgcatactctggtttt 27813507  T
Q  314 agattttttgttgttagtcgcagattttgattaatttaagattaattaagctctttatcctatatctgcttataaatgatttttgccctatg 405  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  27813506 agattgtttgttgttagtcgcagattttgattaatttaagattaattaagctctttatcctatatctgcttataaatgatttttgccttatg 27813415  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 135
Target Start/End: Complemental strand, 25640953 - 25640836
Alignment:
Q  19 aaacttagggttgaagaaatggatatttgttcctcgatggtacaaaagccggtcagttttctgtcacacacaacaaaactatcgctgcttcagctccgac 118  Q
    ||||||||| ||||||||||||||||| ||||||| ||| |||| ||||||| |||||| | ||||| |||||| |||||||  |||||| ||||| ||     
T  25640953 aaacttaggattgaagaaatggatattagttcctcaatgatacagaagccggacagtttcccgtcacgcacaaccaaactattactgctttagctctgaa 25640854  T
Q  119 agt-ggtggctatcagag 135  Q
    ||| ||||||||||||||    
T  25640853 agtgggtggctatcagag 25640836  T

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Target: chr2 (Bit Score: 74; Significance: 8e-34; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 19 - 135
Target Start/End: Complemental strand, 30269000 - 30268883
Alignment:
Q  19 aaacttagggttgaagaaatggatatttgttcctcgatggtacaaaagccggtcagttttctgtcacacacaacaaaactatcgctgcttcagctccgac 118  Q
    ||||||||||||||||||||||||||| ||||||||||| |||| ||| |||||||||| | |||||||||||| ||||||| |||||||||||||||||    
T  30269000 aaacttagggttgaagaaatggatattagttcctcgatgatacagaagtcggtcagtttcccgtcacacacaaccaaactattgctgcttcagctccgac 30268901  T
Q  119 agt-ggtggctatcagag 135  Q
    ||| ||||||||| ||||    
T  30268900 agtgggtggctattagag 30268883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 195
Target Start/End: Complemental strand, 31481873 - 31481696
Alignment:
Q  19 aaacttagggttgaagaaatggatatttgttcctcgatggtacaaaagccggtcagttttctgtcacacacaacaaaactatcgctgcttcagctccgac 118  Q
    ||||||||||||||||||||||||||| ||| || ||||||||| |||||| |||| || |  |||  || ||| ||| ||| |||||| |||  ||| |    
T  31481873 aaacttagggttgaagaaatggatattggtttcttgatggtacagaagccgatcaggttcccatcatgcagaaccaaaatattgctgctccagtgccggc 31481774  T
Q  119 agtggtggctatcagagacgaaaggatacttgtgtacattggtcgg-ggcagattttgttatgtggtgccactgcagt 195  Q
    |||||||||| || |||| || ||||   ||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  31481773 agtggtggctctcggagaggagaggacgattgtgtacattggtcggaggctgattttgttatgtggtgccactgcagt 31481696  T

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Target: chr2; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 19 - 135
Target Start/End: Original strand, 31332229 - 31332346
Alignment:
Q  19 aaacttagggttgaagaaatggatatttgttcctcgatggtacaaaagccggtcagttttctgtcacacacaacaaaactatcgctgcttcagctccgac 118  Q
    ||||||||| ||||||||||||||||| ||||||| ||| |||| ||| ||||| |||| | ||||| |||||| ||||||| ||||||| |||||||||    
T  31332229 aaacttaggattgaagaaatggatattagttcctcaatgatacagaagtcggtctgtttcccgtcacgcacaaccaaactattgctgctttagctccgac 31332328  T
Q  119 agt-ggtggctatcagag 135  Q
    ||| ||||||||||||||    
T  31332329 agtgggtggctatcagag 31332346  T

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Target: chr2; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 19 - 135
Target Start/End: Original strand, 31338959 - 31339076
Alignment:
Q  19 aaacttagggttgaagaaatggatatttgttcctcgatggtacaaaagccggtcagttttctgtcacacacaacaaaactatcgctgcttcagctccgac 118  Q
    ||||||||| ||||||||||||||||| ||||||| ||| |||| ||| ||||| |||| | ||||| |||||| ||||||| ||||||| |||||||||    
T  31338959 aaacttaggattgaagaaatggatattagttcctcaatgatacagaagtcggtctgtttcccgtcacgcacaaccaaactattgctgctttagctccgac 31339058  T
Q  119 agt-ggtggctatcagag 135  Q
     || ||||||||||||||    
T  31339059 tgtgggtggctatcagag 31339076  T

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Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 19 - 135
Target Start/End: Original strand, 4683206 - 4683323
Alignment:
Q  19 aaacttagggttgaagaaatggatatttgttcctcgatggtacaaaagccggtcagttttctgtcacacacaacaaaactatcgctgcttcagctccgac 118  Q
    ||||||||| ||||||||||||||||| ||||||||||| |||| |||||||||||||| | ||||| |||||| ||||||| ||||||| |||||||||    
T  4683206 aaacttaggattgaagaaatggatattagttcctcgatgatacagaagccggtcagtttcccgtcacgcacaaccaaactattgctgctttagctccgac 4683305  T
Q  119 agt-ggtggctatcagag 135  Q
    ||| ||||||||||||||    
T  4683306 agtgggtggctatcagag 4683323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 19 - 135
Target Start/End: Complemental strand, 53302326 - 53302209
Alignment:
Q  19 aaacttagggttgaagaaatggatatttgttcctcgatggtacaaaagccggtcagttttctgtcacacacaacaaaactatcgctgcttcagctccgac 118  Q
    ||||||||||||||||||||||||||| ||||||||||| |||| ||| |||||||||| | ||||| |||||| ||| ||| |||||||||||||||||    
T  53302326 aaacttagggttgaagaaatggatattagttcctcgatgatacagaagtcggtcagtttcccgtcacgcacaaccaaagtattgctgcttcagctccgac 53302227  T
Q  119 agt-ggtggctatcagag 135  Q
    ||| ||||||||||||||    
T  53302226 agtgggtggctatcagag 53302209  T

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Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 14 - 135
Target Start/End: Original strand, 47064137 - 47064259
Alignment:
Q  14 tcatcaaacttagggttgaagaaatggatatttgttcctcgatggtacaaaagccggtcagttttctgtcacacacaacaaaactatcgctgcttcagct 113  Q
    |||| |||||||||||| |||||||||||||| ||||||||||| |||| ||| |||||||||| | ||||| |||||| ||||||| ||||||||||||    
T  47064137 tcatgaaacttagggttaaagaaatggatattagttcctcgatgatacagaagtcggtcagtttcccgtcacgcacaaccaaactattgctgcttcagct 47064236  T
Q  114 ccgacagt-ggtggctatcagag 135  Q
    |||||||| ||||||||| ||||    
T  47064237 ccgacagtgggtggctattagag 47064259  T

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Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 19 - 135
Target Start/End: Original strand, 7404207 - 7404324
Alignment:
Q  19 aaacttagggttgaagaaatggatatttgttcctcgatggtacaaaagccggtcagttttctgtcacacacaacaaaactatcgctgcttcagctccgac 118  Q
    ||||||||| ||||||||||||||||| ||||||||||| |||| |||||||||||||| | ||||| |||||| ||||||| ||||||| |||||||||    
T  7404207 aaacttaggattgaagaaatggatattagttcctcgatgatacagaagccggtcagtttcccgtcacgcacaaccaaactattgctgctttagctccgac 7404306  T
Q  119 agt-ggtggctatcagag 135  Q
    ||| ||||||||||||||    
T  7404307 agtgggtggctatcagag 7404324  T

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Target: chr6 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 30824899 - 30824851
Alignment:
Q  19 aaacttagggttgaagaaatggatatttgttcctcgatggtacaaaagc 67  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  30824899 aaacttagggttgaagaaatggatatttgttcctcgatggtacaaaagc 30824851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 300
Target Start/End: Complemental strand, 6761872 - 6761839
Alignment:
Q  267 gcgtaaaggtatcctttctgtttgcattgataat 300  Q
    ||||||||||| ||||||||||||||||||||||    
T  6761872 gcgtaaaggtaccctttctgtttgcattgataat 6761839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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