View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2934_high_4 (Length: 310)
Name: NF2934_high_4
Description: NF2934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2934_high_4 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 143; Significance: 4e-75; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 164 - 310
Target Start/End: Original strand, 6476004 - 6476150
Alignment:
| Q |
164 |
gatccaaacgcaatgctaagagatgaaatcattggttccaaaagcgcaaggcacagcaccaccgccgctgtatcttcgaataaggttcttgtggcggtta |
263 |
Q |
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| T |
6476004 |
gatccaaacgcaatgctaagagatgaaatcattggttccaaaagcgcaaggcacagcaccaccgccgctgtatcttcgaataaggttctcgtggcggtta |
6476103 |
T |
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| Q |
264 |
aagcggagaaggtgatctcaaacaccgcattagcatgggcgcttact |
310 |
Q |
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| T |
6476104 |
aagcggagaaggtgatctcaaacaccgcattagcatgggcgcttact |
6476150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 19 - 140
Target Start/End: Original strand, 6475866 - 6475986
Alignment:
| Q |
19 |
aactaaccattgattacaaaatgccagttgtagaaaacatggagcattcattcaatctaccgcaaaataatgcaatacaaacgtaacatcaaaacccaaa |
118 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6475866 |
aactaaccat-gattacaaaatgccagttgtagaaaacatggagcattcattcaatctaccgcaaaataatgcaatacaaacgtaacatcaaaacccaaa |
6475964 |
T |
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| Q |
119 |
accaaaaccgaaattcacattt |
140 |
Q |
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| T |
6475965 |
accaaaaccgaaattcacattt |
6475986 |
T |
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