View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2934_low_3 (Length: 338)
Name: NF2934_low_3
Description: NF2934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2934_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 15215433 - 15215109
Alignment:
| Q |
1 |
gataaggcttggttgttgttgttgcagctgtattattttagtaa-------aaagaaaaatgtcttagatccgccgctcctggtctagtctaaaaaatat |
93 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
15215433 |
gataaggcttggttgttgttgttgtag---tattattttagtaacatacaaaaagaaaaatgtcttagatccgccgctcccggtctagtctaaaaaatat |
15215337 |
T |
|
| Q |
94 |
actaaagaaaaggtacgcaggtagaggtatgacattttagaatgcatcgcaacatcatcattaagtattgtttattgcaagttgcaatcgttccatttca |
193 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15215336 |
actaaataaaaggt--gcaggtagaggtatgacattatagaatgcatcgcaacatcatcattaagtattgtttattgcaagttgcaatcgttccatttca |
15215239 |
T |
|
| Q |
194 |
taaagtattaaataaaatcctaatctaaccggttaggaacaaaattctaaagctaacgacaattgcaactagtactataacaaatttgtatttgtgttct |
293 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15215238 |
taaagtattaaataaaatcctaatctaactggttaggaacaaaattctaaagctaacgacaattgcaactagtactataacaaatttgtatttgtgttct |
15215139 |
T |
|
| Q |
294 |
ccttcaatggcttcaacagatctcacaaat |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
15215138 |
ccttcaatggcttcaacagatctcacaaat |
15215109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 285 - 323
Target Start/End: Original strand, 15066296 - 15066334
Alignment:
| Q |
285 |
ttgtgttctccttcaatggcttcaacagatctcacaaat |
323 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15066296 |
ttgtgttctccttcaatggcttcaacagatctcacaaat |
15066334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 285 - 323
Target Start/End: Original strand, 15076249 - 15076287
Alignment:
| Q |
285 |
ttgtgttctccttcaatggcttcaacagatctcacaaat |
323 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15076249 |
ttgtgttctccttcaatggcttcaacagatctcacaaat |
15076287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 220
Target Start/End: Original strand, 15051962 - 15051999
Alignment:
| Q |
183 |
gttccatttcataaagtattaaataaaatcctaatcta |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15051962 |
gttccatttcataaagtattaaataaaatcctaatcta |
15051999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 285 - 318
Target Start/End: Original strand, 15052091 - 15052124
Alignment:
| Q |
285 |
ttgtgttctccttcaatggcttcaacagatctca |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
15052091 |
ttgtgttctccttcaatggcttcaacagatctca |
15052124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 320
Target Start/End: Complemental strand, 1618755 - 1618718
Alignment:
| Q |
283 |
atttgtgttctccttcaatggcttcaacagatctcaca |
320 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
1618755 |
atttgtgttctccttcaatggcatcaacaaatctcaca |
1618718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University