View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2935-Insertion-1 (Length: 900)
Name: NF2935-Insertion-1
Description: NF2935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2935-Insertion-1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 872; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 872; E-Value: 0
Query Start/End: Original strand, 7 - 898
Target Start/End: Complemental strand, 49042062 - 49041171
Alignment:
| Q |
7 |
aataatgtcaagtccaccaaatctatgcatgaaagaagcgcgtttagaagccgaagctgtaatgtttggagcattagacgcactttttgctaaaacatgt |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| || |
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|
| T |
49042062 |
aataatgtcaagtccaccaaatctatgcatgaaagaagcgcgtttagaagccgaatctgtaatgtttggatcattagacgcactttttgctaaaacaggt |
49041963 |
T |
|
| Q |
107 |
gttaatccaagagacattgacattcttgttgtaaattgtagtttgtttaacccaactccttcactttctgcaatgattgtgaaccattacaagctaagaa |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
49041962 |
gttaatccaagagacattgacattcttgttgtaaattgtagtttgtttaacccaactccttcactttctgcaatgattgtgaaccattacaagcttagaa |
49041863 |
T |
|
| Q |
207 |
caaacattaaaagctataatctcggaggtatgggttgtagtgctggtcttatttcaattgatcttgctaaagatcttttgaaagcaaatccaaattccta |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49041862 |
caaacattaaaagctataatctcggaggtatgggttgtagtgctggtcttatttcaattgatcttgctaaagatcttttgaaagcaaatccaaattccta |
49041763 |
T |
|
| Q |
307 |
cgctgtcgtcttgagcacagagaatttaaccctcaattggtactttggaaatgatcgttcaatgcttctttctaattgcattttccgaatgggtggcgcc |
406 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49041762 |
cgctgtcgtcttgagcaccgagaatttaaccctcaattggtactttggaaatgatcgttcaatgcttctttctaattgcattttccgaatgggtggcgcc |
49041663 |
T |
|
| Q |
407 |
gccatacttctttccaataagtcctctgatcgaacccgttccaaatacaagcttgttcatacagttcgaacccataaaggagctgatgacaagaactata |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49041662 |
gccatacttctttccaataagtcctctgatcgaacccgttccaaatacaagcttgttcatacagttcgaacccataaaggagctgatgacaagaactata |
49041563 |
T |
|
| Q |
507 |
actgtgtttaccagaaagaagatgagacagggaaagttggtgtttcattggctagagaattaatggctgttgcaggagatgctttgaaaacaaacataac |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49041562 |
actgtgtttaccagaaagaagatgagacagggaaagttggtgtttcattggctagagaattaatggctgttgcaggagatgctttgaaaacaaacataac |
49041463 |
T |
|
| Q |
607 |
aacgttgggtccattggttttgccattttctgaacagttgatgttttttgtttctttggttagaaggaagttgctgaaaggttcaggtgtgaaaccttat |
706 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49041462 |
aacgttgggtccattggttttgccattttctgaacagttgatgttttttgtttctttggttagaaggaagttgctgaaaggttcaggtgtgaaaccttat |
49041363 |
T |
|
| Q |
707 |
ataccagatttcaaattagcttttgaacatttctgtattcatgctggtggaagagctgttcttgatgagttgcagaagaatcttcaactcagtgagtggc |
806 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49041362 |
ataccagatttcaaattagcttttgaacatttctgtattcatgctggtggaagagctgttcttgatgagttgcagaagaatcttcaactcagtgagtggc |
49041263 |
T |
|
| Q |
807 |
atatggaaccgtctcggatgactctgcatagatttggaaacacttcaagcagttctctatggtatgaactggcttatactgaggcaaagggc |
898 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49041262 |
atatggaaccgtctcggatgactctgcatagatttggaaacacttcaagcagttctctatggtatgaactggcttatactgaggcaaagggc |
49041171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 701 - 775
Target Start/End: Original strand, 31333842 - 31333916
Alignment:
| Q |
701 |
ccttatataccagatttcaaattagcttttgaacatttctgtattcatgctggtggaagagctgttcttgatgag |
775 |
Q |
| |
|
|||||||| || |||||||| ||||||| ||||||||||| |||||||| ||||||||||||||| | |||||| |
|
|
| T |
31333842 |
ccttatattcctgatttcaagctagctttcgaacatttctgcattcatgccggtggaagagctgttttagatgag |
31333916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 380 - 538
Target Start/End: Original strand, 49039743 - 49039901
Alignment:
| Q |
380 |
aattgcattttccgaatgggtggcgccgccatacttctttccaataagtcctctgatcgaacccgttccaaatacaagcttgttcatacagttcgaaccc |
479 |
Q |
| |
|
||||| |||||||||||||| || || ||| ||||||| |||||||| |||| |||| | |||| ||||| |||||| | |||||| |||||||| | |
|
|
| T |
49039743 |
aattgtattttccgaatgggaggagctgccgtacttctctccaataaatcctttgataggacccaatccaagtacaagttacttcatagcgttcgaactc |
49039842 |
T |
|
| Q |
480 |
ataaaggagctgatgacaagaactataactgtgtttaccagaaagaagatgagacaggg |
538 |
Q |
| |
|
|| |||||| ||||||||| ||| || ||||| | ||| ||||| || || |||||| |
|
|
| T |
49039843 |
attcaggagccaatgacaagagctacaattgtgtgttccaaaaagaggacgaaacaggg |
49039901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 168; Significance: 1e-89; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 100 - 303
Target Start/End: Original strand, 26463824 - 26464026
Alignment:
| Q |
100 |
aacatgtgttaatccaagagacattgacattcttgttgtaaattgtagtttgtttaacccaactccttcactttctgcaatgattgtgaaccattacaag |
199 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
26463824 |
aacatgtgttaattcaagagacattgacatccttgttgtaaattgtagtttgtataacccaactccttccctttctgcaatgattgtgaaccatgacaag |
26463923 |
T |
|
| Q |
200 |
ctaagaacaaacattaaaagctataatctcggaggtatgggttgtagtgctggtcttatttcaattgatcttgctaaagatcttttgaaagcaaatccaa |
299 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
26463924 |
ctaagaacaaacattaaaagctataatcttggaggtatgggttgtagtgctggtcttatttcaattgatcttgctaaa-atcttttgaaagcaagtccaa |
26464022 |
T |
|
| Q |
300 |
attc |
303 |
Q |
| |
|
|||| |
|
|
| T |
26464023 |
attc |
26464026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 101; Significance: 1e-49; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 183 - 303
Target Start/End: Original strand, 31197650 - 31197769
Alignment:
| Q |
183 |
ttgtgaaccattacaagctaagaacaaacattaaaagctataatctcggaggtatgggttgtagtgctggtcttatttcaattgatcttgctaaagatct |
282 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
31197650 |
ttgtgaatcattacaagctaagaacaaacattaaaagctataatcttggaggtatgggttgtagtgctggtcttatttcaattgatcttgctaaa-atct |
31197748 |
T |
|
| Q |
283 |
tttgaaagcaaatccaaattc |
303 |
Q |
| |
|
||||||||||| ||||||||| |
|
|
| T |
31197749 |
tttgaaagcaagtccaaattc |
31197769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 713 - 888
Target Start/End: Original strand, 15239448 - 15239623
Alignment:
| Q |
713 |
gatttcaaattagcttttgaacatttctgtattcatgctggtggaagagctgttcttgatgagttgcagaagaatcttcaactcagtgagtggcatatgg |
812 |
Q |
| |
|
||||| |||||||||||||| ||||| ||||||||||||||||||||||||||| | ||||||||| |||| |||||| | | ||||| |||||||||| |
|
|
| T |
15239448 |
gattttaaattagcttttgagcatttttgtattcatgctggtggaagagctgttttggatgagttggagaaaaatcttgatttaagtgattggcatatgg |
15239547 |
T |
|
| Q |
813 |
aaccgtctcggatgactctgcatagatttggaaacacttcaagcagttctctatggtatgaactggcttatactga |
888 |
Q |
| |
|
|||| || ||||||| ||| |||||||||| |||||||| || ||||| | ||||||||| ||||||||||||| |
|
|
| T |
15239548 |
aaccatcaaggatgacactgaatagatttggtaacacttctagtagttcattgtggtatgaattggcttatactga |
15239623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 713 - 888
Target Start/End: Original strand, 34053147 - 34053322
Alignment:
| Q |
713 |
gatttcaaattagcttttgaacatttctgtattcatgctggtggaagagctgttcttgatgagttgcagaagaatcttcaactcagtgagtggcatatgg |
812 |
Q |
| |
|
||||| |||||||||||||| ||||| ||||||||||||||||||||||||||| | ||||| || |||| |||||| | || ||||| |||||||||| |
|
|
| T |
34053147 |
gattttaaattagcttttgagcatttttgtattcatgctggtggaagagctgttttggatgaattagagaaaaatcttgaccttagtgattggcatatgg |
34053246 |
T |
|
| Q |
813 |
aaccgtctcggatgactctgcatagatttggaaacacttcaagcagttctctatggtatgaactggcttatactga |
888 |
Q |
| |
|
|||| || | ||||| || |||||||||| || ||||| || ||||| ||||||||||| ||||||||||||| |
|
|
| T |
34053247 |
aaccatcaagaatgacactaaatagatttggtaatacttctagtagttcattatggtatgaattggcttatactga |
34053322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 134 - 276
Target Start/End: Original strand, 34051972 - 34052114
Alignment:
| Q |
134 |
gttgtaaattgtagtttgtttaacccaactccttcactttctgcaatgattgtgaaccattacaagctaagaacaaacattaaaagctataatctcggag |
233 |
Q |
| |
|
||||| ||||||||||||||||| || || ||||| |||||||| ||||||||||| ||||| ||| ||||| || || |||| |||||||| || | |
|
|
| T |
34051972 |
gttgtgaattgtagtttgtttaatcctacaccttctctttctgctatgattgtgaatcattataagttaagagggaatgttcaaagttataatcttggtg |
34052071 |
T |
|
| Q |
234 |
gtatgggttgtagtgctggtcttatttcaattgatcttgctaa |
276 |
Q |
| |
|
||||||||||||||||||| ||||| || ||||| |||||||| |
|
|
| T |
34052072 |
gtatgggttgtagtgctggacttatctctattgaccttgctaa |
34052114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 134 - 273
Target Start/End: Original strand, 15237143 - 15237282
Alignment:
| Q |
134 |
gttgtaaattgtagtttgtttaacccaactccttcactttctgcaatgattgtgaaccattacaagctaagaacaaacattaaaagctataatctcggag |
233 |
Q |
| |
|
||||| ||||||||||||||||| ||||| || || |||||||| ||||||||||| ||||| ||| | ||| ||| || || |||||||| || | |
|
|
| T |
15237143 |
gttgtgaattgtagtttgtttaatccaacaccatctctttctgccatgattgtgaatcattataagttgagaggaaatatcttgagttataatcttggtg |
15237242 |
T |
|
| Q |
234 |
gtatgggttgtagtgctggtcttatttcaattgatcttgc |
273 |
Q |
| |
|
||||||||||||||||||||||||| || ||||| ||||| |
|
|
| T |
15237243 |
gtatgggttgtagtgctggtcttatctctattgaccttgc |
15237282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 697 - 793
Target Start/End: Complemental strand, 50087384 - 50087288
Alignment:
| Q |
697 |
gaaaccttatataccagatttcaaattagcttttgaacatttctgtattcatgctggtggaagagctgttcttgatgagttgcagaagaatcttcaa |
793 |
Q |
| |
|
|||||| |||||||| ||||| ||| ||||||||||||||| ||||| ||||||||||| | ||||| |||||||||| || |||||||||||| |
|
|
| T |
50087384 |
gaaaccatatatacctgattttaaacaagcttttgaacatttttgtatacatgctggtggtcgtgctgtgattgatgagttacaaaagaatcttcaa |
50087288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 701 - 775
Target Start/End: Complemental strand, 23499346 - 23499272
Alignment:
| Q |
701 |
ccttatataccagatttcaaattagcttttgaacatttctgtattcatgctggtggaagagctgttcttgatgag |
775 |
Q |
| |
|
|||||||| ||||||||||| ||||||| ||||||||||| |||||||| ||||||||||||||| | |||||| |
|
|
| T |
23499346 |
ccttatattccagatttcaagctagctttcgaacatttctgcattcatgccggtggaagagctgttttagatgag |
23499272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 280
Target Start/End: Original strand, 26452751 - 26452900
Alignment:
| Q |
131 |
cttgttgtaaattgtagtttgtttaacccaactccttcactttctgcaatgattgtgaaccattacaagctaagaacaaacattaaaagctataatctcg |
230 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||| || |||||||| || |||||||| ||| | || || |||| || |||| ||| | |||| | | |
|
|
| T |
26452751 |
cttgttgttaattgtagtttgtttaatccaacgccatcactttcagctatgattgttaacaaatataaattaaggggtaatattagaagttttaatttgg |
26452850 |
T |
|
| Q |
231 |
gaggtatgggttgtagtgctggtcttatttcaattgatcttgctaaagat |
280 |
Q |
| |
|
| ||||||||||||||||||||| |||| | |||||||||||||||||| |
|
|
| T |
26452851 |
gtggtatgggttgtagtgctggtgttatagctattgatcttgctaaagat |
26452900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 701 - 775
Target Start/End: Original strand, 26453318 - 26453392
Alignment:
| Q |
701 |
ccttatataccagatttcaaattagcttttgaacatttctgtattcatgctggtggaagagctgttcttgatgag |
775 |
Q |
| |
|
||||||||||| ||||| || | |||||||| ||||| ||||||||||||||||| |||||||| |||||||| |
|
|
| T |
26453318 |
ccttatatacctgattttaagcttgcttttgagcatttttgtattcatgctggtggtagagctgtgattgatgag |
26453392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 696 - 792
Target Start/End: Complemental strand, 23271646 - 23271550
Alignment:
| Q |
696 |
tgaaaccttatataccagatttcaaattagcttttgaacatttctgtattcatgctggtggaagagctgttcttgatgagttgcagaagaatcttca |
792 |
Q |
| |
|
|||| |||||||| || ||||||||| ||| ||||| ||||| |||||||||||||||||| | || || | |||||||| |||||||||||||| |
|
|
| T |
23271646 |
tgaagccttatattcctgatttcaaacaagcgtttgagcatttttgtattcatgctggtggacgtgccgtgatcgatgagttacagaagaatcttca |
23271550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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