View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2935-Insertion-2 (Length: 839)
Name: NF2935-Insertion-2
Description: NF2935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2935-Insertion-2 |
 | |
|
| [»] chr1 (3 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 392; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 403 - 839
Target Start/End: Original strand, 1793021 - 1793456
Alignment:
| Q |
403 |
gtttttactttgaattattcattttttaaaaagttaatataaaacttctaaagtgaacgattaacaatttagagcttaaaatgagtaataccaaatatta |
502 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
1793021 |
gtttttactttgaattattcattttttaaaaagttaatataaaacttataaagtgaacgattaacaatttagagcataaaatgagtaataccaaatatta |
1793120 |
T |
|
| Q |
503 |
aagaataatgcagcaacattagaagaggttgtgacccataagttgatttaaatttgcatacgttgatttaaatttgtattcaaacaacttgcatggaagc |
602 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1793121 |
aagaataatgcagcaacattagaagaggttgtgacccataagttgatttaaatttgcatacgttgatttaaatttgtattcaaacaacttgcatggaagc |
1793220 |
T |
|
| Q |
603 |
tccaacaacttgcttaannnnnnngctcatctacatcaagtaaaatacttggatattgacgactattttctaaaggtataatgcttgaattgacaaccct |
702 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1793221 |
tccaacaacttgcttaatttttttgctcatctacatcaagtaaaatacttggatattgacgactattttctaaaggtataatgcttgaattgacaaccct |
1793320 |
T |
|
| Q |
703 |
aatattgtttagtttcccacacctctaattccctaccaatttgaaatgaactacaataatgagtatgcaactcttgatctgcaagtattataaaacatca |
802 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |
|
|
| T |
1793321 |
aatattgtttagtttcccacacctccaattccctaccaatttgaaatgaactacaataatgagtatgcaactcttgatctgcaagtattat-aaacatta |
1793419 |
T |
|
| Q |
803 |
tattctgatttatagcaatttttcttttctacttcag |
839 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1793420 |
tattctgatttatagcaatttttcttttctacttcag |
1793456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 8 - 329
Target Start/End: Original strand, 1792626 - 1792947
Alignment:
| Q |
8 |
aatttccatcctgcaaatgtttctgcttctaccatgccagcttgtcctactgccaagactggtctcatgggcagtggggcattcttgtgtcttaattcat |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1792626 |
aatttccatcctgcaaatgtttctgcttctaccatgccagcttgtcctactgccaagactggtctcatgggcagtggggcattcttgtgtcttaattcat |
1792725 |
T |
|
| Q |
108 |
cacnnnnnnnnggcttttatccctaatgctggtnnnnnnngmaakagaggactatcttcaagagttgcctcccaatgtttaggttttcaatcaatttcta |
207 |
Q |
| |
|
||| |||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1792726 |
cactttattttggcttttatccctaatgctggtaaaaaatgtaagagaggactatcttcaagagttgcctcccaatgtttaggttttcaatcaatttcta |
1792825 |
T |
|
| Q |
208 |
gatagcatcttgttttctattttttcttgctattcatgaacgtagacaacatccttttcatcattatatactcgactttatgaattttgggacaactttt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1792826 |
gatagcatcttgttttctattttttcttgctattcatgaacgtacacaacatccttttcatcattatatactcgactttatgaattttgggacaactttt |
1792925 |
T |
|
| Q |
308 |
tcaaatattgtctcttatatac |
329 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
1792926 |
tcaaatattgtctcttatatac |
1792947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 767 - 825
Target Start/End: Original strand, 2007155 - 2007212
Alignment:
| Q |
767 |
atgcaactcttgatctgcaagtattataaaacatcatattctgatttatagcaattttt |
825 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| ||||||||||||| || ||||||| |
|
|
| T |
2007155 |
atgcaactcttgatctgcaagtatt-taaaacattatattctgatttagagaaattttt |
2007212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University