View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2935-Insertion-3 (Length: 713)
Name: NF2935-Insertion-3
Description: NF2935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2935-Insertion-3 |
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Alignment Details
Target: chr1 (Bit Score: 536; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 7 - 617
Target Start/End: Original strand, 1582109 - 1582718
Alignment:
| Q |
7 |
attatgttatttctatcttctgtatgattttcgtccatcgttgcagtactatcatgctgtttgatttaaatcaatattgtttgcatataacaatctagta |
106 |
Q |
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| T |
1582109 |
attatgttatttctatcttctgtatgattttcgtccatcgttgcagtactatcatgctgtttgatttaaatcaatattgtttgcatataacaatctagta |
1582208 |
T |
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| Q |
107 |
annnnnnn-atgtaaatttgagaataaaccatcaatttagtccataaactgttataaacagtccttaaaatatatgaaatcagtcaatttagtttacaaa |
205 |
Q |
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| T |
1582209 |
attttttttatgtaaatttgagaataaaccatcaatttagtccataaactgttataaacagtccttaaaatatatgaaatcagtcaatttagtttacaaa |
1582308 |
T |
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| Q |
206 |
gtactctaacatgtgtcaccgtcacgtgccattgcattagattatgtgattttctcatattattatctgtgttgatttgtcagtgtgttgtgtttcgtgt |
305 |
Q |
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| T |
1582309 |
gtactctaacatgtgtcactgtcacgtgccattgcattagattatgtgattttctcatattattatctgtgttgatttgtcagtgtgttgtgtttcgtgt |
1582408 |
T |
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| Q |
306 |
gcttcatagctaaggtatatcataacctatcaatttagtcccaacatcttgatggcagggactaaattaacagattttataaacttgaaacactaattat |
405 |
Q |
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| T |
1582409 |
gcttcatagctaaggtatatcataacctgtcaatttagtcccaacatcttgatggcagggactaaattaacagattttataaacttgaaacactaattat |
1582508 |
T |
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| Q |
406 |
atttgtatagtttatggactgaattgaagagagtgagattttagagactatatgaatgatttattctaaatttgaagctagcttttgtggtaacaattat |
505 |
Q |
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| T |
1582509 |
atttgtatagtttatggactgaattgaagagagtgagattttagagactatatgaatgatttattctaaatttgaagctagcttttgtggtaacaattat |
1582608 |
T |
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| Q |
506 |
aattannnnnnnnaaaattaaaacatcacccattcattcaccacagtcattattgtagcatggttatttttggacaaattactagcagttgattatttat |
605 |
Q |
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| T |
1582609 |
aattattttttttaaaattaaaacatcacccattcatacac--cagtcattattgtagcatggttatttttggacaaattactagcagttgattatttat |
1582706 |
T |
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| Q |
606 |
cttgcaaagttg |
617 |
Q |
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| T |
1582707 |
cttgcaaagttg |
1582718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 674 - 713
Target Start/End: Original strand, 1582773 - 1582812
Alignment:
| Q |
674 |
gttatgatgctttgttattccttttatttaactcgctgta |
713 |
Q |
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| T |
1582773 |
gttatgatgctttgttattcctcttatttaactcgctgta |
1582812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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