View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2935-Insertion-4 (Length: 724)

Name: NF2935-Insertion-4
Description: NF2935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2935-Insertion-4
NF2935-Insertion-4
[»] chr5 (13 HSPs)
chr5 (8-663)||(41088742-41089413)
chr5 (164-474)||(41080921-41081228)
chr5 (438-662)||(41103171-41103397)
chr5 (218-382)||(41103399-41103559)
chr5 (491-663)||(1216535-1216709)
chr5 (99-165)||(41103641-41103707)
chr5 (62-142)||(41081238-41081317)
chr5 (129-166)||(1216894-1216931)
chr5 (683-724)||(1696099-1696140)
chr5 (683-724)||(7484370-7484411)
chr5 (688-724)||(4722968-4723004)
chr5 (591-658)||(41080772-41080839)
chr5 (683-724)||(36349181-36349222)
[»] chr1 (8 HSPs)
chr1 (62-162)||(4132207-4132306)
chr1 (683-724)||(37779437-37779478)
chr1 (683-724)||(15355662-15355703)
chr1 (683-724)||(35186292-35186333)
chr1 (683-724)||(49260557-49260598)
chr1 (683-724)||(23343808-23343849)
chr1 (683-724)||(39856121-39856162)
chr1 (683-720)||(40532259-40532296)
[»] chr8 (4 HSPs)
chr8 (683-724)||(26487747-26487788)
chr8 (683-724)||(42167814-42167855)
chr8 (683-724)||(19241535-19241576)
chr8 (683-724)||(19314719-19314760)
[»] chr7 (5 HSPs)
chr7 (683-724)||(22292137-22292178)
chr7 (683-724)||(43350269-43350310)
chr7 (683-724)||(17184490-17184531)
chr7 (683-724)||(20876922-20876963)
chr7 (683-724)||(42736281-42736322)
[»] chr3 (12 HSPs)
chr3 (683-724)||(11377858-11377899)
chr3 (683-724)||(51012163-51012204)
chr3 (688-724)||(30193839-30193875)
chr3 (683-724)||(34470938-34470979)
chr3 (683-724)||(47759829-47759870)
chr3 (683-724)||(49274718-49274759)
chr3 (683-720)||(50458131-50458168)
chr3 (683-723)||(44928759-44928799)
chr3 (683-724)||(18441673-18441714)
chr3 (683-724)||(19486747-19486788)
chr3 (683-724)||(42322285-42322326)
chr3 (695-724)||(46413165-46413194)
[»] chr2 (7 HSPs)
chr2 (683-724)||(23719974-23720015)
chr2 (683-724)||(24107646-24107687)
chr2 (683-724)||(34520593-34520634)
chr2 (683-724)||(6978123-6978164)
chr2 (689-724)||(10359427-10359462)
chr2 (694-724)||(37311519-37311549)
chr2 (683-724)||(17537786-17537827)
[»] chr4 (8 HSPs)
chr4 (688-724)||(2774315-2774351)
chr4 (683-724)||(43888368-43888409)
chr4 (683-724)||(47873324-47873365)
chr4 (683-724)||(49790808-49790849)
chr4 (683-724)||(49816292-49816333)
chr4 (683-724)||(51026666-51026707)
chr4 (683-722)||(21170770-21170809)
chr4 (683-724)||(22437921-22437962)
[»] chr6 (1 HSPs)
chr6 (695-724)||(12398098-12398127)


Alignment Details
Target: chr5 (Bit Score: 538; Significance: 0; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 8 - 663
Target Start/End: Complemental strand, 41089413 - 41088742
Alignment:
Q  8 ttagttactctccaatttgttctcttttgccaaattattcttatttatttgtcattccaaaaccaaatcttcttcgcctcaacaaaaaattctcattctt 107  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  41089413 ttagttactctctaatttgttctcttttgccaaattattcttatttatttgtcattccaaaaccaaatcttctacgcctcaacaaaaaattctcattctt 41089314  T
Q  108 gcatattaaggtcacatgaatcatg---cagctccaattctgataagcatattactaacctac----------------caatcctaagcaagacaatat 188  Q
    |||||||||||||||||||||||||   ||||||||||||| |||||||||||||||||||||                |||||||||||||||||||||    
T  41089313 gcatattaaggtcacatgaatcatgatgcagctccaattctcataagcatattactaacctacaatcacatatttctaccaatcctaagcaagacaatat 41089214  T
Q  189 gacataaataaagcctcaattgcctaagtcaccatagataacgaaagaccaat---aaggtagttttaacattatgcatgagcatgactagaaccataat 285  Q
    ||||||| ||||| |||||||||||||| ||||||||||||||||||||||||   |||||||||||||||||||||||||      |||||||||||||    
T  41089213 gacataactaaagtctcaattgcctaagccaccatagataacgaaagaccaatctaaaggtagttttaacattatgcatga------ctagaaccataat 41089120  T
Q  286 ggtaagggataagctatgatttagattcgttaaaatgccatttcctgtcaagaaaccacatcagaccccggcttatcaaactccaccatgatataaagta 385  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  41089119 ggtaagggataagctatgatttagattcgttaaaatgccatttcctgtcaagaaaccacatcagaccccggcttatcaaactccaccatgatataaaata 41089020  T
Q  386 gaagcagctgtctcatatatgtagattatacaaaataaattacctagaatattaacagtagctgcctcaaaatatgcagattacacacatccgcacgcct 485  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41089019 gaagcagctgcctcatatatgtagattatacaaaataaattacctagaatattaacagtagctgcctcaaaatatgcagattacacacatccgcacgcct 41088920  T
Q  486 accccaaactagcataatactgcgaattggcacaagaaagagaccccataaatctccttaccaccatgatatcctctgaataacacttcattggaaccat 585  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41088919 accccaaactagcataatactgcgaattggcacaagaaagagaccccataaatctccttaccaccatgatatcctctgaataacacttcattggaaccat 41088820  T
Q  586 ctacctgcttacaatcacttgataaaagaatgaaatacaaactgctacgaattacaagcctctaaaaaatgctacttg 663  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  41088819 ctacctgcttacaatcacttgataaaagaatgaaatacaaactgctacgaattgcaagcctctaaaaaatgctacttg 41088742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 165; E-Value: 7e-88
Query Start/End: Original strand, 164 - 474
Target Start/End: Complemental strand, 41081228 - 41080921
Alignment:
Q  164 ctaccaatcctaagcaagacaatatgacataaataaagcctcaattgcctaagtcaccatagataacgaaagaccaat---aaggtagttttaacattat 260  Q
    ||||||||||| ||||||||||||||||||||  || | |||||||||||||| |||||||||||| |||||||||||   ||| ||||||||||||||     
T  41081228 ctaccaatcctgagcaagacaatatgacataacaaaggtctcaattgcctaagccaccatagataatgaaagaccaatctaaagttagttttaacattag 41081129  T
Q  261 gcatgagcatgactagaaccataatggtaagggataagctatgatttagattcgttaaaatgccatttcctgtcaagaaaccacatcagaccccggctta 360  Q
    |||||||      |||||||||| |||||||||||| |||||||||| |||| |||||||||||||||||||||||||||| |||| |  ||||  ||||    
T  41081128 gcatgag------tagaaccatattggtaagggatatgctatgattttgattggttaaaatgccatttcctgtcaagaaacgacataacccccctactta 41081035  T
Q  361 tcaaactccaccatgatataaagtagaagcagctgtctcatatatgtagattatacaaaataaattacctagaatattaacagtagctgcctcaaaatat 460  Q
    ||| |||||||||| ||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||| | || |||||||||||||    
T  41081034 tcatactccaccataatataaaatagaagcagctgtcttatatatgcagattatacaaaataaattacctaaaatattaaccgcagatgcctcaaaatat 41080935  T
Q  461 gcagattacacaca 474  Q
    ||||||||||||||    
T  41080934 gcagattacacaca 41080921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 438 - 662
Target Start/End: Complemental strand, 41103397 - 41103171
Alignment:
Q  438 taacagtagctgcctcaaaatatgcagattaca--cacatccgcacgcctaccccaaactagcataatactgcgaattggcacaagaaagagaccccata 535  Q
    |||||| || |||||||||||||  ||||||||  || ||| |||||||||| ||||||||||||| ||||| |||||||||| |||||||||| ||| |    
T  41103397 taacagcagatgcctcaaaatatctagattacatccatatctgcacgcctacgccaaactagcatattactgtgaattggcacgagaaagagactccaca 41103298  T
Q  536 aatctccttaccaccatgatatcctctgaataacacttcattggaaccatctacctgcttacaatcacttgataaaagaatgaaatacaaactgctacga 635  Q
    ||||| |||  ||||||||||||| ||||||||| ||||||||||||||||| |||||| ||||||||||||  |||||||||||| |||||||||||||    
T  41103297 aatctacttgtcaccatgatatccactgaataacccttcattggaaccatctccctgctcacaatcacttgactaaagaatgaaatgcaaactgctacga 41103198  T
Q  636 attacaagcctctaaaaaatgctactt 662  Q
    |||||||| |||  |||||||| ||||    
T  41103197 attacaagtctcacaaaaatgccactt 41103171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 218 - 382
Target Start/End: Complemental strand, 41103559 - 41103399
Alignment:
Q  218 caccatagataacgaaagaccaat---aaggtagttttaacattatgcatgagcatgactagaaccataatggtaagggataagctatgatttagattcg 314  Q
    |||||||||||||||||| |||||   |||||||||| |||||||||||||||      ||||| |||| |||||| ||||||||||||||||  ||| |    
T  41103559 caccatagataacgaaaggccaatttaaaggtagtttcaacattatgcatgag------tagaatcatattggtaacggataagctatgattttaattgg 41103466  T
Q  315 ttaaaatgccatttcctgtcaagaaaccacatcagaccccggcttatcaaactccaccatgatataaa 382  Q
    |||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  41103465 ttaaaatggcatttc-tgtcaagaaaccacatcagaccctggcttatcaaactccaccatgatataaa 41103399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 491 - 663
Target Start/End: Complemental strand, 1216709 - 1216535
Alignment:
Q  491 aaactagcataatactgcgaattggcacaagaaagagaccccataaatctccttaccaccatgatatcctctgaataacacttca-ttggaaccatctac 589  Q
    |||||||| |||||| | ||||||||||||||||||||| ||| |||||||||| ||||||| ||||||  |||||||| ||||| |||||||| ||| |    
T  1216709 aaactagcttaataccgagaattggcacaagaaagagactccacaaatctccttgccaccattatatccgttgaataacccttcatttggaaccttctcc 1216610  T
Q  590 ctgcttacaatcacttgataaaagaatgaaatacaaactgctacgaattacaagcctc-taaaaaatgctacttg 663  Q
    ||||| ||||||||||||  ||||||| |||| |||| ||||||||||||||| ||||  |||||| ||||||||    
T  1216609 ctgctcacaatcacttgagtaaagaattaaatgcaaattgctacgaattacaatcctcacaaaaaaggctacttg 1216535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 99 - 165
Target Start/End: Complemental strand, 41103707 - 41103641
Alignment:
Q  99 ctcattcttgcatattaaggtcacatgaatcatgcagctccaattctgataagcatattactaacct 165  Q
    |||||| ||||| ||| ||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  41103707 ctcattgttgcacattgaggtcccatgaatcttgcagctccaattctgataagcatattactaacct 41103641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 142
Target Start/End: Complemental strand, 41081317 - 41081238
Alignment:
Q  62 ttccaaaaccaaatcttcttcgcctcaacaaaaaattctcattcttgcatattaaggtcacatgaatcatgcagctccaat 142  Q
    ||||||||||||||||| | ||| |||| | |||||||||||||||||| ||| ||||  |||||||| ||||||||||||    
T  41081317 ttccaaaaccaaatcttttacgcgtcaa-agaaaattctcattcttgcacattgaggttccatgaatcttgcagctccaat 41081238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 166
Target Start/End: Complemental strand, 1216931 - 1216894
Alignment:
Q  129 catgcagctccaattctgataagcatattactaaccta 166  Q
    |||||||| |||||||||||||||||||||||||||||    
T  1216931 catgcagcaccaattctgataagcatattactaaccta 1216894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 683 - 724
Target Start/End: Original strand, 1696099 - 1696140
Alignment:
Q  683 catgccatcggcgatttttctttcttcttgtcgtcaccctcc 724  Q
    |||| ||||| |||||||||||||||||||||||||||||||    
T  1696099 catgtcatcgacgatttttctttcttcttgtcgtcaccctcc 1696140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 683 - 724
Target Start/End: Complemental strand, 7484411 - 7484370
Alignment:
Q  683 catgccatcggcgatttttctttcttcttgtcgtcaccctcc 724  Q
    |||| ||||||| |||||||||||||||||||||||||||||    
T  7484411 catgtcatcggcaatttttctttcttcttgtcgtcaccctcc 7484370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 688 - 724
Target Start/End: Complemental strand, 4723004 - 4722968
Alignment:
Q  688 catcggcgatttttctttcttcttgtcgtcaccctcc 724  Q
    ||||||||| |||||||||||||||||||||||||||    
T  4723004 catcggcgaattttctttcttcttgtcgtcaccctcc 4722968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 591 - 658
Target Start/End: Complemental strand, 41080839 - 41080772
Alignment:
Q  591 tgcttacaatcacttgataaaagaatgaaatacaaactgctacgaattacaagcctctaaaaaatgct 658  Q
    |||| ||||||| ||||  |||||||||||| |||||| ||| ||||||||||||||  |||||||||    
T  41080839 tgctcacaatcaattgactaaagaatgaaatgcaaacttctatgaattacaagcctcataaaaatgct 41080772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 683 - 724
Target Start/End: Complemental strand, 36349222 - 36349181
Alignment:
Q  683 catgccatcggcgatttttctttcttcttgtcgtcaccctcc 724  Q
    |||| |||||||||||||||||||||| |||||| |||||||    
T  36349222 catgtcatcggcgatttttctttcttcctgtcgtgaccctcc 36349181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 8e-26; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 62 - 162
Target Start/End: Original strand, 4132207 - 4132306
Alignment:
Q  62 ttccaaaaccaaatcttcttcgcctcaacaaaaaattctcattcttgcatattaaggtcacatgaatcatgcagctccaattctgataagcatattacta 161  Q
    ||||||||||||||||||| |||||||||||||| | ||||||  |||||||| ||||| ||||||||||| |||||||||||||||||| |||||||||    
T  4132207 ttccaaaaccaaatcttctacgcctcaacaaaaagt-ctcattgctgcatattgaggtcccatgaatcatgtagctccaattctgataagtatattacta 4132305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 683 - 724
Target Start/End: Original strand, 37779437 - 37779478
Alignment:
Q  683 catgccatcggcgatttttctttcttcttgtcgtcaccctcc 724  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  37779437 catgtcatcggcgatttttctttcttcttgtcgtcaccctcc 37779478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 683 - 724
Target Start/End: Complemental strand, 15355703 - 15355662
Alignment:
Q  683 catgccatcggcgatttttctttcttcttgtcgtcaccctcc 724  Q
    |||| |||||| ||||||||||||||||||||||||||||||    
T  15355703 catgtcatcggtgatttttctttcttcttgtcgtcaccctcc 15355662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 683 - 724
Target Start/End: Original strand, 35186292 - 35186333
Alignment:
Q  683 catgccatcggcgatttttctttcttcttgtcgtcaccctcc 724  Q
    |||| |||||| ||||||||||||||||||||||||||||||    
T  35186292 catgtcatcggtgatttttctttcttcttgtcgtcaccctcc 35186333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 683 - 724
Target Start/End: Complemental strand, 49260598 - 49260557
Alignment:
Q  683 catgccatcggcgatttttctttcttcttgtcgtcaccctcc 724  Q
    |||| |||||| ||||||||||||||||||||||||||||||    
T  49260598 catgtcatcggtgatttttctttcttcttgtcgtcaccctcc 49260557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 683 - 724
Target Start/End: Original strand, 23343808 - 23343849
Alignment:
Q  683 catgccatcggcgatttttctttcttcttgtcgtcaccctcc 724  Q
    |||| ||||| ||||||||| |||||||||||||||||||||    
T  23343808 catgtcatcgacgatttttcattcttcttgtcgtcaccctcc 23343849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 683 - 724
Target Start/End: Complemental strand, 39856162 - 39856121
Alignment:
Q  683 catgccatcggcgatttttctttcttcttgtcgtcaccctcc 724  Q
    |||| |||| |||||||||||||||||||||| |||||||||    
T  39856162 catgtcatcagcgatttttctttcttcttgtcatcaccctcc 39856121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 683 - 720
Target Start/End: Complemental strand, 40532296 - 40532259
Alignment:
Q  683 catgccatcggcgatttttctttcttcttgtcgtcacc 720  Q
    |||| |||||||||||||||||||||||| ||||||||    
T  40532296 catgtcatcggcgatttttctttcttcttatcgtcacc 40532259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 683 - 724
Target Start/End: Original strand, 26487747 - 26487788
Alignment:
Q  683 catgccatcggcgatttttctttcttcttgtcgtcaccctcc 724  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  26487747 catgtcatcggcgatttttctttcttcttgtcgtcaccctcc 26487788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 683 - 724
Target Start/End: Complemental strand, 42167855 - 42167814
Alignment:
Q  683 catgccatcggcgatttttctttcttcttgtcgtcaccctcc 724  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  42167855 catgtcatcggcgatttttctttcttcttgtcgtcaccctcc 42167814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 683 - 724
Target Start/End: Complemental strand, 19241576 - 19241535
Alignment:
Q  683 catgccatcggcgatttttctttcttcttgtcgtcaccctcc 724  Q
    |||| ||||| |||||||||||||||||||||||||||||||    
T  19241576 catgtcatcgacgatttttctttcttcttgtcgtcaccctcc 19241535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 683 - 724
Target Start/End: Complemental strand, 19314760 - 19314719
Alignment:
Q  683 catgccatcggcgatttttctttcttcttgtcgtcaccctcc 724  Q
    |||| ||||| |||||||||||||||||||||||||||||||    
T  19314760 catgtcatcgacgatttttctttcttcttgtcgtcaccctcc 19314719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 683 - 724
Target Start/End: Original strand, 22292137 - 22292178
Alignment:
Q  683 catgccatcggcgatttttctttcttcttgtcgtcaccctcc 724  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  22292137 catgtcatcggcgatttttctttcttcttgtcgtcaccctcc 22292178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 683 - 724
Target Start/End: Complemental strand, 43350310 - 43350269
Alignment:
Q  683 catgccatcggcgatttttctttcttcttgtcgtcaccctcc 724  Q
    |||| |||||||||| ||||||||||||||||||||||||||    
T  43350310 catgtcatcggcgatatttctttcttcttgtcgtcaccctcc 43350269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 683 - 724
Target Start/End: Original strand, 17184490 - 17184531
Alignment:
Q  683 catgccatcggcgatttttctttcttcttgtcgtcaccctcc 724  Q
    |||| ||||||||||||||||||||||||||  |||||||||    
T  17184490 catgtcatcggcgatttttctttcttcttgttttcaccctcc 17184531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 683 - 724
Target Start/End: Complemental strand, 20876963 - 20876922
Alignment:
Q  683 catgccatcggcgatttttctttcttcttgtcgtcaccctcc 724  Q
    |||| |||| ||||||||||||||||||||||||| ||||||    
T  20876963 catgtcatcagcgatttttctttcttcttgtcgtcgccctcc 20876922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 683 - 724
Target Start/End: Original strand, 42736281 - 42736322
Alignment:
Q  683 catgccatcggcgatttttctttcttcttgtcgtcaccctcc 724  Q
    |||| ||||| |||||||||||||||||||| ||||||||||    
T  42736281 catgtcatcgacgatttttctttcttcttgtggtcaccctcc 42736322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 683 - 724
Target Start/End: Complemental strand, 11377899 - 11377858
Alignment:
Q  683 catgccatcggcgatttttctttcttcttgtcgtcaccctcc 724  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  11377899 catgtcatcggcgatttttctttcttcttgtcgtcaccctcc 11377858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 683 - 724
Target Start/End: Complemental strand, 51012204 - 51012163
Alignment:
Q  683 catgccatcggcgatttttctttcttcttgtcgtcaccctcc 724  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  51012204 catgtcatcggcgatttttctttcttcttgtcgtcaccctcc 51012163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 688 - 724
Target Start/End: Original strand, 30193839 - 30193875
Alignment:
Q  688 catcggcgatttttctttcttcttgtcgtcaccctcc 724  Q
    |||||||||||||||||||||||||||||||||||||    
T  30193839 catcggcgatttttctttcttcttgtcgtcaccctcc 30193875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 683 - 724
Target Start/End: Complemental strand, 34470979 - 34470938
Alignment:
Q  683 catgccatcggcgatttttctttcttcttgtcgtcaccctcc 724  Q
    |||| |||||| ||||||||||||||||||||||||||||||    
T  34470979 catgtcatcggtgatttttctttcttcttgtcgtcaccctcc 34470938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 683 - 724
Target Start/End: Complemental strand, 47759870 - 47759829
Alignment:
Q  683 catgccatcggcgatttttctttcttcttgtcgtcaccctcc 724  Q
    |||| |||||||| ||||||||||||||||||||||||||||    
T  47759870 catgtcatcggcgttttttctttcttcttgtcgtcaccctcc 47759829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 683 - 724
Target Start/End: Original strand, 49274718 - 49274759
Alignment:
Q  683 catgccatcggcgatttttctttcttcttgtcgtcaccctcc 724  Q
    |||| |||||| ||||||||||||||||||||||||||||||    
T  49274718 catgtcatcggtgatttttctttcttcttgtcgtcaccctcc 49274759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 683 - 720
Target Start/End: Complemental strand, 50458168 - 50458131
Alignment:
Q  683 catgccatcggcgatttttctttcttcttgtcgtcacc 720  Q
    |||| |||||||||||||||||||||||||||||||||    
T  50458168 catgtcatcggcgatttttctttcttcttgtcgtcacc 50458131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 683 - 723
Target Start/End: Original strand, 44928759 - 44928799
Alignment:
Q  683 catgccatcggcgatttttctttcttcttgtcgtcaccctc 723  Q
    |||| ||||| ||||||||||||||||||||||||||||||    
T  44928759 catgtcatcgacgatttttctttcttcttgtcgtcaccctc 44928799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 683 - 724
Target Start/End: Original strand, 18441673 - 18441714
Alignment:
Q  683 catgccatcggcgatttttctttcttcttgtcgtcaccctcc 724  Q
    |||| ||| ||||||||||||||||||||||| |||||||||    
T  18441673 catgtcataggcgatttttctttcttcttgtcatcaccctcc 18441714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 683 - 724
Target Start/End: Original strand, 19486747 - 19486788
Alignment:
Q  683 catgccatcggcgatttttctttcttcttgtcgtcaccctcc 724  Q
    |||| ||| ||||||||||||||||||||||| |||||||||    
T  19486747 catgtcataggcgatttttctttcttcttgtcatcaccctcc 19486788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 683 - 724
Target Start/End: Complemental strand, 42322326 - 42322285
Alignment:
Q  683 catgccatcggcgatttttctttcttcttgtcgtcaccctcc 724  Q
    |||| |||||||||||||||||||||||||||| ||| ||||    
T  42322326 catgtcatcggcgatttttctttcttcttgtcgccacactcc 42322285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 695 - 724
Target Start/End: Complemental strand, 46413194 - 46413165
Alignment:
Q  695 gatttttctttcttcttgtcgtcaccctcc 724  Q
    ||||||||||||||||||||||||||||||    
T  46413194 gatttttctttcttcttgtcgtcaccctcc 46413165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 683 - 724
Target Start/End: Complemental strand, 23720015 - 23719974
Alignment:
Q  683 catgccatcggcgatttttctttcttcttgtcgtcaccctcc 724  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  23720015 catgtcatcggcgatttttctttcttcttgtcgtcaccctcc 23719974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 683 - 724
Target Start/End: Complemental strand, 24107687 - 24107646
Alignment:
Q  683 catgccatcggcgatttttctttcttcttgtcgtcaccctcc 724  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  24107687 catgtcatcggcgatttttctttcttcttgtcgtcaccctcc 24107646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 683 - 724
Target Start/End: Complemental strand, 34520634 - 34520593
Alignment:
Q  683 catgccatcggcgatttttctttcttcttgtcgtcaccctcc 724  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  34520634 catgtcatcggcgatttttctttcttcttgtcgtcaccctcc 34520593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 683 - 724
Target Start/End: Original strand, 6978123 - 6978164
Alignment:
Q  683 catgccatcggcgatttttctttcttcttgtcgtcaccctcc 724  Q
    |||| ||||||| |||||||||||||||||||||||||||||    
T  6978123 catgtcatcggcaatttttctttcttcttgtcgtcaccctcc 6978164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 689 - 724
Target Start/End: Complemental strand, 10359462 - 10359427
Alignment:
Q  689 atcggcgatttttctttcttcttgtcgtcaccctcc 724  Q
    ||||| ||||||||||||||||||||||||||||||    
T  10359462 atcggtgatttttctttcttcttgtcgtcaccctcc 10359427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 694 - 724
Target Start/End: Complemental strand, 37311549 - 37311519
Alignment:
Q  694 cgatttttctttcttcttgtcgtcaccctcc 724  Q
    |||||||||||||||||||||||||||||||    
T  37311549 cgatttttctttcttcttgtcgtcaccctcc 37311519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 683 - 724
Target Start/End: Complemental strand, 17537827 - 17537786
Alignment:
Q  683 catgccatcggcgatttttctttcttcttgtcgtcaccctcc 724  Q
    |||| |||||| ||||||||||||||||||||||| ||||||    
T  17537827 catgtcatcggtgatttttctttcttcttgtcgtcgccctcc 17537786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 688 - 724
Target Start/End: Original strand, 2774315 - 2774351
Alignment:
Q  688 catcggcgatttttctttcttcttgtcgtcaccctcc 724  Q
    |||||||||||||||||||||||||||||||||||||    
T  2774315 catcggcgatttttctttcttcttgtcgtcaccctcc 2774351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 683 - 724
Target Start/End: Complemental strand, 43888409 - 43888368
Alignment:
Q  683 catgccatcggcgatttttctttcttcttgtcgtcaccctcc 724  Q
    |||| ||||| |||||||||||||||||||||||||||||||    
T  43888409 catgtcatcgacgatttttctttcttcttgtcgtcaccctcc 43888368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 683 - 724
Target Start/End: Original strand, 47873324 - 47873365
Alignment:
Q  683 catgccatcggcgatttttctttcttcttgtcgtcaccctcc 724  Q
    |||| |||||| ||||||||||||||||||||||||||||||    
T  47873324 catgtcatcggtgatttttctttcttcttgtcgtcaccctcc 47873365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 683 - 724
Target Start/End: Complemental strand, 49790849 - 49790808
Alignment:
Q  683 catgccatcggcgatttttctttcttcttgtcgtcaccctcc 724  Q
    |||| ||||| |||||||||||||||||||||||||||||||    
T  49790849 catgtcatcgacgatttttctttcttcttgtcgtcaccctcc 49790808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 683 - 724
Target Start/End: Complemental strand, 49816333 - 49816292
Alignment:
Q  683 catgccatcggcgatttttctttcttcttgtcgtcaccctcc 724  Q
    |||| ||||||||||||||||||||||||||| |||||||||    
T  49816333 catgtcatcggcgatttttctttcttcttgtcatcaccctcc 49816292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 683 - 724
Target Start/End: Complemental strand, 51026707 - 51026666
Alignment:
Q  683 catgccatcggcgatttttctttcttcttgtcgtcaccctcc 724  Q
    |||| |||||| ||||||||||||||||||||||||||||||    
T  51026707 catgtcatcggtgatttttctttcttcttgtcgtcaccctcc 51026666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 683 - 722
Target Start/End: Original strand, 21170770 - 21170809
Alignment:
Q  683 catgccatcggcgatttttctttcttcttgtcgtcaccct 722  Q
    |||| ||||||||||||||||||||||||||| |||||||    
T  21170770 catgtcatcggcgatttttctttcttcttgtcatcaccct 21170809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 683 - 724
Target Start/End: Original strand, 22437921 - 22437962
Alignment:
Q  683 catgccatcggcgatttttctttcttcttgtcgtcaccctcc 724  Q
    |||| ||||| ||||||||||||||||||| |||||||||||    
T  22437921 catgtcatcgacgatttttctttcttcttgccgtcaccctcc 22437962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 695 - 724
Target Start/End: Original strand, 12398098 - 12398127
Alignment:
Q  695 gatttttctttcttcttgtcgtcaccctcc 724  Q
    ||||||||||||||||||||||||||||||    
T  12398098 gatttttctttcttcttgtcgtcaccctcc 12398127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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