View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2935-Insertion-6 (Length: 542)

Name: NF2935-Insertion-6
Description: NF2935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2935-Insertion-6
NF2935-Insertion-6
[»] chr3 (9 HSPs)
chr3 (7-296)||(43614687-43614976)
chr3 (7-243)||(43609376-43609612)
chr3 (397-523)||(29438248-29438374)
chr3 (390-523)||(43615679-43615812)
chr3 (329-396)||(43615009-43615076)
chr3 (160-243)||(43603120-43603203)
chr3 (7-114)||(43602941-43603050)
chr3 (339-398)||(42914669-42914728)
chr3 (403-465)||(11985585-11985647)
[»] chr7 (6 HSPs)
chr7 (402-514)||(19362399-19362511)
chr7 (403-523)||(44598444-44598563)
chr7 (402-518)||(47967521-47967636)
chr7 (402-477)||(9698331-9698406)
chr7 (403-475)||(19113527-19113598)
chr7 (341-387)||(23705216-23705262)
[»] chr1 (4 HSPs)
chr1 (402-510)||(52453923-52454031)
chr1 (402-517)||(170872-170987)
chr1 (402-513)||(4808345-4808456)
chr1 (402-477)||(28702407-28702478)
[»] chr6 (2 HSPs)
chr6 (402-507)||(14533478-14533583)
chr6 (417-477)||(20613247-20613307)
[»] chr2 (6 HSPs)
chr2 (402-509)||(17623420-17623527)
chr2 (330-391)||(32532584-32532645)
chr2 (341-395)||(12287802-12287856)
chr2 (417-484)||(5887872-5887939)
chr2 (422-484)||(17303255-17303317)
chr2 (425-517)||(14735690-14735782)
[»] chr8 (5 HSPs)
chr8 (403-475)||(27084472-27084544)
chr8 (340-392)||(3499376-3499428)
chr8 (340-389)||(4490536-4490585)
chr8 (343-396)||(33285257-33285310)
chr8 (340-388)||(19722754-19722802)
[»] chr4 (5 HSPs)
chr4 (402-477)||(13564708-13564783)
chr4 (422-527)||(26494421-26494525)
chr4 (424-512)||(31523046-31523134)
chr4 (450-516)||(46852108-46852174)
chr4 (417-470)||(29096115-29096168)
[»] scaffold0060 (1 HSPs)
scaffold0060 (403-513)||(35661-35771)
[»] chr5 (3 HSPs)
chr5 (417-475)||(15974158-15974216)
chr5 (339-392)||(10721274-10721327)
chr5 (417-526)||(18768331-18768440)


Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 7 - 296
Target Start/End: Original strand, 43614687 - 43614976
Alignment:
Q  7 atgaaaacatctgtgtttgttttttatagacagctgattggagccattatcatggtccctttatttttgatatttgaacggtaatgttgataaatatgtt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43614687 atgaaaacatctgtgtttgttttttatagacagctgattggagccattatcatggtccctttatttttgatatttgaacggtaatgttgataaatatgtt 43614786  T
Q  107 ctgtttttctttcctatagttttacttgatttttccctgacataatactttattatatggtccaggaaacaagccgtgccagtaatattctcatttatga 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |    
T  43614787 ctgtttttctttcctatagttttacttgatttttccctgacataatactttattatatggtccaggaaacaagccgtgccagcaatattctcatttataa 43614886  T
Q  207 ccatcttcaagatttttatgctttcattattggggtacgtagtacattattttaattattctctaatctttattttgttggtacatagag 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  43614887 ccatcttcaagatttttatgctttcattattggggtacgtagtacattattttaattattctctaatctttattttgtcggtacatagag 43614976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 7 - 243
Target Start/End: Original strand, 43609376 - 43609612
Alignment:
Q  7 atgaaaacatctgtgtttgttttttatagacagctgattggagccattatcatggtccctttatttttgatatttgaacggtaatgttgataaatatgtt 106  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||| ||||||||| ||||||||||| |||||||||    
T  43609376 atgaaaacatatgtgtttgttttttatagacaactgattggagccattatcatggtccctttagctttaatatttgaaaggtaatgttgaaaaatatgtt 43609475  T
Q  107 ctgtttttctttcctatag-ttttacttgatttttccctgacataatactttattatatggtccaggaaacaagccgtgccagtaatattctcatttatg 205  Q
    ||||||||||||||||||| |||||||||| ||||| || || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  43609476 ctgtttttctttcctatagtttttacttga-ttttctctaacgtaatactttattatatggtccaggaaacaagccgtgccagtaacattctcatttatg 43609574  T
Q  206 accatcttcaagatttttatgctttcattattggggta 243  Q
    ||||||||||||||||||||||||||||||||||||||    
T  43609575 accatcttcaagatttttatgctttcattattggggta 43609612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 397 - 523
Target Start/End: Original strand, 29438248 - 29438374
Alignment:
Q  397 ggcaagggcggatctctttgggggtaggcaggtgccatggtatcccccaaagtttccttatatactatattaggagtataacatcaatttgaattgagtt 496  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |    
T  29438248 ggcaggggcggatctctttgggggcaggcaggtgccatggtatcccccaaagtttccttatatactatattaggagtataatatcaatttgaattgagct 29438347  T
Q  497 gctgcagtggaaagggggtaccatgaa 523  Q
    | |||||||||||||||||||||||||    
T  29438348 ggtgcagtggaaagggggtaccatgaa 29438374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 390 - 523
Target Start/End: Original strand, 43615679 - 43615812
Alignment:
Q  390 ccgggagggcaagggcggatctctttgggggtaggcaggtgccatggtatcccccaaagtttccttatatactatattaggagtataacatcaatttgaa 489  Q
    ||||||||||| || ||| ||| |||||||| ||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  43615679 ccgggagggcatggacgggtctttttgggggcaggcaggtgtcatgttatcccctaaagtttccttatatactatattaggagtataacatcaatctgaa 43615778  T
Q  490 ttgagttgctgcagtggaaagggggtaccatgaa 523  Q
    ||||||||||||||||||||||||||||||||||    
T  43615779 ttgagttgctgcagtggaaagggggtaccatgaa 43615812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 329 - 396
Target Start/End: Original strand, 43615009 - 43615076
Alignment:
Q  329 ttagattactgccttaagaactgcactctagacgcatcagcgagaagaaaatcttccaagcccgggag 396  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43615009 ttagattactgccttaagaactgcactctagacgcatcagcgagaagaaaatcttccaagcccgggag 43615076  T

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Target: chr3; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 160 - 243
Target Start/End: Original strand, 43603120 - 43603203
Alignment:
Q  160 tatatggtccaggaaacaagccgtgccagtaatattctcatttatgaccatcttcaagatttttatgctttcattattggggta 243  Q
    |||||||||||| ||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||| |||| |||||    
T  43603120 tatatggtccagcaaacaagccgtgccagtgaaattctcatttaagaccatcttcaagatttttatgctttcactatttgggta 43603203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 7 - 114
Target Start/End: Original strand, 43602941 - 43603050
Alignment:
Q  7 atgaaaacatctgtgtttgttttttatagacagctgattggagccattatcatggtccctttatttttgatatttgaacggt---aatgttgataaatat 103  Q
    |||||||| ||||||||||| || || ||||| |||||||||||||| || |||||||||||   |||||||||||||||||   |||||||| ||||||    
T  43602941 atgaaaacctctgtgtttgtcttctacagacaactgattggagccatgattatggtccctttggctttgatatttgaacggtaacaatgttga-aaatat 43603039  T
Q  104 gttctgttttt 114  Q
    | |||||||||    
T  43603040 gatctgttttt 43603050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 339 - 398
Target Start/End: Complemental strand, 42914728 - 42914669
Alignment:
Q  339 gccttaagaactgcactctagacgcatcagcgagaagaaaatcttccaagcccgggaggg 398  Q
    |||||||||||||||||||||| | |||||||||||| ||| ||||||||  ||||||||    
T  42914728 gccttaagaactgcactctagatgtatcagcgagaagtaaagcttccaagttcgggaggg 42914669  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 403 - 465
Target Start/End: Complemental strand, 11985647 - 11985585
Alignment:
Q  403 ggcggatctctttgggggtaggcaggtgccatggtatcccccaaagtttccttatatactata 465  Q
    ||||||||||||||| ||| |||||| |||| ||||||||||||  ||  |||||||||||||    
T  11985647 ggcggatctctttggtggtcggcaggagccacggtatcccccaagattaacttatatactata 11985585  T

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Target: chr7 (Bit Score: 97; Significance: 2e-47; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 402 - 514
Target Start/End: Original strand, 19362399 - 19362511
Alignment:
Q  402 gggcggatctctttgggggtaggcaggtgccatggtatcccccaaagtttccttatatactatattaggagtataacatcaatttgaattgagttgctgc 501  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||    
T  19362399 gggcggatctctttgggggcaggcaggtgccatggtatcccccaaagtttccttatatactatattaggagtataatatcaatctgaattgagctgctgc 19362498  T
Q  502 agtggaaaggggg 514  Q
    |||||||||||||    
T  19362499 agtggaaaggggg 19362511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 403 - 523
Target Start/End: Original strand, 44598444 - 44598563
Alignment:
Q  403 ggcggatctctttgggggtaggcaggtgccatggtatcccccaaagtttccttatatactatattaggagtataacatcaatttgaattgagttgctgca 502  Q
    |||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||    
T  44598444 ggcgtatctctttgggg-taggcaggtgtcatggtatcccccaaagtttccttatatactatattaggagtataatattaatttgaattgagctgctgca 44598542  T
Q  503 gtggaaagggggtaccatgaa 523  Q
    |||||||||||||||| ||||    
T  44598543 gtggaaagggggtaccgtgaa 44598563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 402 - 518
Target Start/End: Complemental strand, 47967636 - 47967521
Alignment:
Q  402 gggcggatctctttgggggtaggcaggtgccatggtatcccccaaagtttccttatatactatattaggagtataacatcaatttgaattgagttgctgc 501  Q
    |||||||||| |||||||| || || ||||||||||||||| |||| |||||||||||| ||||||||||||||||||| ||| | ||||||| |||| |    
T  47967636 gggcggatctatttgggggcag-caagtgccatggtatccctcaaaatttccttatatattatattaggagtataacataaatctaaattgagctgctcc 47967538  T
Q  502 agtggaaagggggtacc 518  Q
    |||||||||||||||||    
T  47967537 agtggaaagggggtacc 47967521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 402 - 477
Target Start/End: Complemental strand, 9698406 - 9698331
Alignment:
Q  402 gggcggatctctttgggggtaggcaggtgccatggtatcccccaaagtttccttatatactatattaggagtataa 477  Q
    |||||||||||||||||||  || |||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  9698406 gggcggatctctttgggggacggtaggtgccatggtatcctccaaagtttccttatatactatattaagagtataa 9698331  T

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Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 403 - 475
Target Start/End: Complemental strand, 19113598 - 19113527
Alignment:
Q  403 ggcggatctctttgggggtaggcaggtgccatggtatcccccaaagtttccttatatactatattaggagtat 475  Q
    ||||||||||||||||||||||| |||| ||||| || ||||||| |||||||||||||| ||||||| ||||    
T  19113598 ggcggatctctttgggggtaggctggtgtcatggcat-ccccaaattttccttatatactgtattaggtgtat 19113527  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 341 - 387
Target Start/End: Original strand, 23705216 - 23705262
Alignment:
Q  341 cttaagaactgcactctagacgcatcagcgagaagaaaatcttccaa 387  Q
    |||||||||| |||||||||||||||||| ||||| |||||||||||    
T  23705216 cttaagaactacactctagacgcatcagcaagaagtaaatcttccaa 23705262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 1e-42; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 402 - 510
Target Start/End: Complemental strand, 52454031 - 52453923
Alignment:
Q  402 gggcggatctctttgggggtaggcaggtgccatggtatcccccaaagtttccttatatactatattaggagtataacatcaatttgaattgagttgctgc 501  Q
    ||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  52454031 gggcggatctctttgggggcaggcaagtgtcatggtatcccccaaagtttccttatatactatattaggagtataatatcaatttgaattgagctgctgc 52453932  T
Q  502 agtggaaag 510  Q
    |||||||||    
T  52453931 agtggaaag 52453923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 402 - 517
Target Start/End: Original strand, 170872 - 170987
Alignment:
Q  402 gggcggatctctttgggggtaggcaggtgccatggtatcccccaaagtttccttatatactatattaggagtataacatcaatttgaattgagttgctgc 501  Q
    ||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||||||||| | ||| | ||||||||||| |||    
T  170872 gggcgaatctctttgggggaaggcaggtgccatgatatcccccaaagtttccttatatagtatattaggagtataataacaactagaattgagttgttgc 170971  T
Q  502 agtggaaagggggtac 517  Q
    |||||| |||||||||    
T  170972 agtggagagggggtac 170987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 402 - 513
Target Start/End: Original strand, 4808345 - 4808456
Alignment:
Q  402 gggcggatctctttgggggtaggcaggtgccatggtatcccccaaagtttccttatatactatattaggagtataacatcaatttgaattgagttgctgc 501  Q
    ||||| ||||||||| ||| ||||||||| | |||||||| ||||||||||||||||||| ||||||| ||||||  | ||| | ||||||| ||||||     
T  4808345 gggcgaatctctttgagggcaggcaggtgtcgtggtatcctccaaagtttccttatataccatattagaagtatattaacaactagaattgatttgctgt 4808444  T
Q  502 agtggaaagggg 513  Q
    ||||||||||||    
T  4808445 agtggaaagggg 4808456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 402 - 477
Target Start/End: Complemental strand, 28702478 - 28702407
Alignment:
Q  402 gggcggatctctttgggggtaggcaggtgccatggtatcccccaaagtttccttatatactatattaggagtataa 477  Q
    |||||||||||||||||||    |||||| ||||||||||| ||||||||||||||||||||||||| ||||||||    
T  28702478 gggcggatctctttggggg----caggtgacatggtatccctcaaagtttccttatatactatattaagagtataa 28702407  T

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Target: chr6 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 402 - 507
Target Start/End: Original strand, 14533478 - 14533583
Alignment:
Q  402 gggcggatctctttgggggtaggcaggtgccatggtatcccccaaagtttccttatatactatattaggagtataacatcaatttgaattgagttgctgc 501  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||| ||||||    
T  14533478 gggcggatctctttgggggcaggcaggtgccatggtatcccccaaagtttcctgatatactatattaggagtataacatcaatataaattgagctgctgc 14533577  T
Q  502 agtgga 507  Q
    | ||||    
T  14533578 aatgga 14533583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 417 - 477
Target Start/End: Complemental strand, 20613307 - 20613247
Alignment:
Q  417 ggggtaggcaggtgccatggtatcccccaaagtttccttatatactatattaggagtataa 477  Q
    |||| ||| ||||||||||| |||||||| | || ||||||||||||||||||| ||||||    
T  20613307 ggggcaggtaggtgccatggcatcccccagatttcccttatatactatattaggtgtataa 20613247  T

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Target: chr2 (Bit Score: 64; Significance: 1e-27; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 402 - 509
Target Start/End: Complemental strand, 17623527 - 17623420
Alignment:
Q  402 gggcggatctctttgggggtaggcaggtgccatggtatcccccaaagtttccttatatactatattaggagtataacatcaatttgaattgagttgctgc 501  Q
    ||||||||||||||||||| || || ||| |||||||||||||||||||||||||||||||||||||| ||||||| | |||   |||||||| ||||||    
T  17623527 gggcggatctctttgggggcagacatgtgtcatggtatcccccaaagtttccttatatactatattagaagtataataacaaccagaattgagctgctgc 17623428  T
Q  502 agtggaaa 509  Q
    ||||||||    
T  17623427 agtggaaa 17623420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 330 - 391
Target Start/End: Original strand, 32532584 - 32532645
Alignment:
Q  330 tagattactgccttaagaactgcactctagacgcatcagcgagaagaaaatcttccaagccc 391  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32532584 tagactactgccttaagaactgcactctagacgcatcagcgagaagaaaatcttccaagccc 32532645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 341 - 395
Target Start/End: Original strand, 12287802 - 12287856
Alignment:
Q  341 cttaagaactgcactctagacgcatcagcgagaagaaaatcttccaagcccggga 395  Q
    |||||||||||||||||||| ||||||||||| || |||||||||||||| ||||    
T  12287802 cttaagaactgcactctagaagcatcagcgaggagtaaatcttccaagcctggga 12287856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 484
Target Start/End: Original strand, 5887872 - 5887939
Alignment:
Q  417 ggggtaggcaggtgccatggtatcccccaaagtttccttatatactatattaggagtataacatcaat 484  Q
    |||| ||| ||||||||||| |||||||| | || |||||||||||| |||||| |||||| ||||||    
T  5887872 ggggcaggtaggtgccatggcatcccccagatttcccttatatactacattaggtgtataatatcaat 5887939  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 422 - 484
Target Start/End: Complemental strand, 17303317 - 17303255
Alignment:
Q  422 aggcaggtgccatggtatcccccaaagtttccttatatactatattaggagtataacatcaat 484  Q
    |||||||||  |||| |||||||| | || ||||||||||||||||||| |||||| ||||||    
T  17303317 aggcaggtgttatggcatcccccagatttcccttatatactatattaggtgtataatatcaat 17303255  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 425 - 517
Target Start/End: Complemental strand, 14735782 - 14735690
Alignment:
Q  425 caggtgccatggtatcccccaaagtttccttatatactatattaggagtataacatcaatttgaattgagttgctgcagtggaaagggggtac 517  Q
    |||| ||||||| || ||||| | ||| |||||||||||||||||| |||| | ||||||| |||||  |||| ||  ||||||| |||||||    
T  14735782 caggggccatggcattccccagatttttcttatatactatattaggtgtattatatcaattagaatttggttgttgttgtggaaatggggtac 14735690  T

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Target: chr8 (Bit Score: 61; Significance: 6e-26; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 403 - 475
Target Start/End: Complemental strand, 27084544 - 27084472
Alignment:
Q  403 ggcggatctctttgggggtaggcaggtgccatggtatcccccaaagtttccttatatactatattaggagtat 475  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  27084544 ggcggatctctttgggggaaggcaggtgccatggcatcccccaaagtttccttatatactatattaggtgtat 27084472  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 340 - 392
Target Start/End: Complemental strand, 3499428 - 3499376
Alignment:
Q  340 ccttaagaactgcactctagacgcatcagcgagaagaaaatcttccaagcccg 392  Q
    ||||||||||||||||||| || ||||||||||||| || |||||||||||||    
T  3499428 ccttaagaactgcactctaaacacatcagcgagaagtaactcttccaagcccg 3499376  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 389
Target Start/End: Original strand, 4490536 - 4490585
Alignment:
Q  340 ccttaagaactgcactctagacgcatcagcgagaagaaaatcttccaagc 389  Q
    ||||||||||||||||||||| |||||| | | ||| |||||||||||||    
T  4490536 ccttaagaactgcactctagaagcatcaacaataagtaaatcttccaagc 4490585  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 396
Target Start/End: Complemental strand, 33285310 - 33285257
Alignment:
Q  343 taagaactgcactctagacgcatcagcgagaagaaaatcttccaagcccgggag 396  Q
    |||||||| ||||||||| |||| || |||||| ||| ||||||||||||||||    
T  33285310 taagaactacactctagatgcattagtgagaagtaaagcttccaagcccgggag 33285257  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 340 - 388
Target Start/End: Complemental strand, 19722802 - 19722754
Alignment:
Q  340 ccttaagaactgcactctagacgcatcagcgagaagaaaatcttccaag 388  Q
    ||||||||||||||||||||| |||||| | || || ||||||||||||    
T  19722802 ccttaagaactgcactctagaagcatcatcaaggagtaaatcttccaag 19722754  T

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Target: chr4 (Bit Score: 56; Significance: 6e-23; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 402 - 477
Target Start/End: Complemental strand, 13564783 - 13564708
Alignment:
Q  402 gggcggatctctttgggggtaggcaggtgccatggtatcccccaaagtttccttatatactatattaggagtataa 477  Q
    |||||||||||||||||||  || |||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  13564783 gggcggatctctttgggggacggtaggtgccatggtatcctccaaagtttccttatatactatattaagagtataa 13564708  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 422 - 527
Target Start/End: Original strand, 26494421 - 26494525
Alignment:
Q  422 aggcaggtgccatggtatcccccaaagtttccttatatactatattaggagtataacatcaatttgaattgagttgctgcagtggaaagggggtaccatg 521  Q
    ||||||||||||||  |||||||| | || ||||||||||||||||||| ||||||  |||||   |||| ||||| |||||||| || ||||| |||||    
T  26494421 aggcaggtgccatgacatcccccagatttcccttatatactatattaggtgtataatttcaataataatttagttgttgcagtggtaa-ggggtgccatg 26494519  T
Q  522 aactgg 527  Q
    ||||||    
T  26494520 aactgg 26494525  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 424 - 512
Target Start/End: Original strand, 31523046 - 31523134
Alignment:
Q  424 gcaggtgccatggtatcccccaaagtttccttatatactatattaggagtataacatcaatttgaattgagttgctgcagtggaaaggg 512  Q
    ||||||| ||||| ||||||||||||||||||||||| | ||||||| |||| ||| ||| | ||||| || | ||||||||| |||||    
T  31523046 gcaggtgtcatggcatcccccaaagtttccttatatattgtattaggtgtattacaacaactagaattcagctactgcagtggtaaggg 31523134  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 450 - 516
Target Start/End: Complemental strand, 46852174 - 46852108
Alignment:
Q  450 ttccttatatactatattaggagtataacatcaatttgaattgagttgctgcagtggaaagggggta 516  Q
    ||||||||||| ||||||||| |||| | | ||||| ||||| ||||||||||||||||||| ||||    
T  46852174 ttccttatatattatattaggtgtattataacaattagaattcagttgctgcagtggaaaggcggta 46852108  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 417 - 470
Target Start/End: Original strand, 29096115 - 29096168
Alignment:
Q  417 ggggtaggcaggtgccatggtatcccccaaagtttccttatatactatattagg 470  Q
    |||| ||||||||||||||| |||||||| | || |||||| ||||||||||||    
T  29096115 ggggcaggcaggtgccatggcatcccccagatttcccttatttactatattagg 29096168  T

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Target: scaffold0060 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 403 - 513
Target Start/End: Original strand, 35661 - 35771
Alignment:
Q  403 ggcggatctctttgggggtaggcaggtgccatggtatcccccaaagtttccttatatactatattaggagtataacatcaatttgaattgagttgctgca 502  Q
    ||||||||| ||  |||| || || ||||||||| |||||||| | || ||||||||||||||||||| ||||||  |||||   |||| ||||| ||||    
T  35661 ggcggatcttttaaggggcagccaagtgccatggcatcccccagatttcccttatatactatattaggtgtataatttcaataataattcagttgttgca 35760  T
Q  503 gtggaaagggg 513  Q
    |||| ||||||    
T  35761 gtggtaagggg 35771  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 417 - 475
Target Start/End: Complemental strand, 15974216 - 15974158
Alignment:
Q  417 ggggtaggcaggtgccatggtatcccccaaagtttccttatatactatattaggagtat 475  Q
    |||| ||||||||||||||| |||||| | | |||||||||||||||||||||| ||||    
T  15974216 ggggcaggcaggtgccatggcatcccctagattttccttatatactatattaggtgtat 15974158  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 339 - 392
Target Start/End: Original strand, 10721274 - 10721327
Alignment:
Q  339 gccttaagaactgcactctagacgcatcagcgagaagaaaatcttccaagcccg 392  Q
    ||||||||||||| |||||||| |||||||| ||||| ||||||||||| ||||    
T  10721274 gccttaagaactgtactctagaagcatcagcaagaagtaaatcttccaaacccg 10721327  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 417 - 526
Target Start/End: Complemental strand, 18768440 - 18768331
Alignment:
Q  417 ggggtaggcaggtgccatggtatcccccaaagtttccttatatactatattaggagtataacatcaatttgaattgagttgctgcagtggaaagggggta 516  Q
    |||| ||||||||||||||| ||||||||   || ||||||||||||||||||| ||||||  || ||   |||| | ||| |||||||| ||| ||||     
T  18768440 ggggcaggcaggtgccatggcatcccccaggtttcccttatatactatattaggtgtataaattctataacaattcaattgttgcagtggtaagtgggtg 18768341  T
Q  517 ccatgaactg 526  Q
    ||||||||||    
T  18768340 ccatgaactg 18768331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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