View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2935-Insertion-7 (Length: 587)
Name: NF2935-Insertion-7
Description: NF2935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2935-Insertion-7 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 155 - 587
Target Start/End: Complemental strand, 4313163 - 4312727
Alignment:
| Q |
155 |
gggtacttacttagcttgcaaaatggtgcaacaaggtcatgtgagttgagttgtgaagagagtgttaaataaacaaagaattaggtacatatcgagggct |
254 |
Q |
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| T |
4313163 |
gggtacttacttagcttgcaaaatggtgcaacaaggtcatgtgagttgagttgtgaagagagtgttaaataaacaaagaattaggtacatatcgagggct |
4313064 |
T |
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| Q |
255 |
gatataactgtctacctgttcctagacatttcctcttccatgggctccactctttcattgtgtatccagttaaactattcatgcggttcatttttgtgat |
354 |
Q |
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| T |
4313063 |
gatataactgtctacctgttcctagacatttcctcttccatgggctccactctttcattgtgtatacagttaaactattcatgcggttcatttttgtgat |
4312964 |
T |
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| Q |
355 |
atatatcnnnnnnncctaggttgccattaagcttggttatcaaagtcaatttttatctaactcaagctaaatttatcgtatatactatgctaattaattg |
454 |
Q |
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| T |
4312963 |
atatatctttttttcctaggttgccattaagcttggttatcaaagtcaatttttatctaactcaagctaaatttatcgtatatactatgctaattaattg |
4312864 |
T |
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| Q |
455 |
gttgtactctttgtaggattgggtattgctac---tannnnnnnnnnnnnnngttttgaaatagcaatgtgacctctcacgtactatagatgacaagtgg |
551 |
Q |
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| T |
4312863 |
gttgtactctttgtaggattgggtattgctacttttttttatttatttttttgttttgaaatagcaatgtgacctcccacgtactacagatgacaagtgg |
4312764 |
T |
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| Q |
552 |
ag-aattgtgaatacgaatccatccttcgttgaagag |
587 |
Q |
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| T |
4312763 |
agcaattgtgaatacgaatccatccttcgttgaagag |
4312727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 8 - 102
Target Start/End: Complemental strand, 4313310 - 4313216
Alignment:
| Q |
8 |
agatacacatcgtcctctgtacgtaccatctacatggaagtgcgttaaaggaaagtgatgaaagaatgaaattatgaaaccaacgtggtaggggc |
102 |
Q |
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| T |
4313310 |
agatacacatcgtcctctgtacgtaccatctacatggaagtgcgttaaaggaaagtgatgaaagaatgaaattatgaaaccaacgtggtaggggc |
4313216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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