View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2935-Insertion-9 (Length: 324)

Name: NF2935-Insertion-9
Description: NF2935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2935-Insertion-9
NF2935-Insertion-9
[»] chr7 (25 HSPs)
chr7 (91-324)||(1953690-1953923)
chr7 (103-324)||(1960823-1961044)
chr7 (103-324)||(27952752-27952973)
chr7 (103-324)||(12696543-12696764)
chr7 (103-324)||(12185778-12186000)
chr7 (8-77)||(12183822-12183891)
chr7 (8-77)||(31664631-31664700)
chr7 (8-77)||(12090597-12090666)
chr7 (8-77)||(12190799-12190868)
chr7 (9-77)||(45500848-45500916)
chr7 (8-74)||(2631356-2631421)
chr7 (8-74)||(8108025-8108090)
chr7 (8-74)||(10346442-10346507)
chr7 (8-74)||(31158413-31158478)
chr7 (8-74)||(33160142-33160207)
chr7 (8-72)||(19472400-19472464)
chr7 (8-63)||(6172497-6172552)
chr7 (8-72)||(2477619-2477683)
chr7 (8-72)||(22321937-22322001)
chr7 (8-63)||(31878571-31878626)
chr7 (8-74)||(23795054-23795119)
chr7 (8-77)||(2797700-2797767)
chr7 (9-72)||(24482705-24482768)
chr7 (286-324)||(1941709-1941747)
chr7 (8-49)||(22818396-22818437)
[»] chr6 (15 HSPs)
chr6 (101-324)||(14478061-14478284)
chr6 (107-324)||(10574899-10575116)
chr6 (8-77)||(24161392-24161461)
chr6 (8-72)||(26510449-26510513)
chr6 (8-72)||(26515565-26515629)
chr6 (8-72)||(9932942-9933006)
chr6 (8-74)||(3539007-3539072)
chr6 (8-77)||(32806899-32806970)
chr6 (8-72)||(34006463-34006527)
chr6 (8-72)||(5989139-5989204)
chr6 (8-73)||(21596668-21596733)
chr6 (8-64)||(24878834-24878890)
chr6 (8-43)||(14479550-14479585)
chr6 (15-57)||(26604315-26604357)
chr6 (23-74)||(15642380-15642428)
[»] scaffold0015 (1 HSPs)
scaffold0015 (101-324)||(184272-184494)
[»] chr2 (19 HSPs)
chr2 (101-324)||(29225806-29226028)
chr2 (101-324)||(29339105-29339327)
chr2 (8-77)||(32522885-32522954)
chr2 (8-77)||(36040399-36040468)
chr2 (8-77)||(23925168-23925235)
chr2 (8-74)||(29223675-29223740)
chr2 (8-74)||(29336974-29337039)
chr2 (8-77)||(24663268-24663337)
chr2 (8-72)||(5784661-5784726)
chr2 (9-77)||(13230479-13230545)
chr2 (8-77)||(43991487-43991556)
chr2 (8-72)||(28458014-28458078)
chr2 (8-77)||(42702343-42702413)
chr2 (9-57)||(14700617-14700665)
chr2 (10-72)||(27257345-27257408)
chr2 (8-51)||(36557659-36557702)
chr2 (8-73)||(36668006-36668072)
chr2 (15-72)||(11651777-11651834)
chr2 (8-77)||(8687810-8687877)
[»] scaffold0147 (1 HSPs)
scaffold0147 (103-324)||(5888-6109)
[»] chr8 (16 HSPs)
chr8 (103-324)||(27352568-27352788)
chr8 (103-324)||(36738349-36738570)
chr8 (8-76)||(34006897-34006963)
chr8 (8-74)||(8743420-8743485)
chr8 (8-74)||(9068304-9068369)
chr8 (8-74)||(28370053-28370118)
chr8 (8-74)||(41577468-41577533)
chr8 (8-72)||(27347988-27348051)
chr8 (8-74)||(3298760-3298827)
chr8 (8-63)||(28926280-28926335)
chr8 (8-74)||(16580045-16580110)
chr8 (8-74)||(22180561-22180626)
chr8 (8-74)||(11309124-11309187)
chr8 (9-76)||(16958509-16958574)
chr8 (8-77)||(24040674-24040741)
chr8 (8-43)||(12538147-12538182)
[»] chr3 (21 HSPs)
chr3 (101-324)||(22096328-22096551)
chr3 (101-324)||(23383872-23384095)
chr3 (8-77)||(48168330-48168399)
chr3 (8-74)||(3588360-3588425)
chr3 (8-77)||(4755002-4755069)
chr3 (8-74)||(7653359-7653424)
chr3 (8-74)||(10386207-10386272)
chr3 (8-74)||(23411637-23411702)
chr3 (8-74)||(27030820-27030885)
chr3 (8-63)||(9989366-9989421)
chr3 (8-63)||(52308222-52308277)
chr3 (8-74)||(8615463-8615528)
chr3 (8-72)||(22097628-22097692)
chr3 (8-63)||(23385366-23385421)
chr3 (8-74)||(36469572-36469636)
chr3 (8-77)||(20963790-20963859)
chr3 (8-77)||(27850687-27850754)
chr3 (8-72)||(33247949-33248013)
chr3 (9-46)||(26335104-26335141)
chr3 (8-44)||(37471823-37471859)
chr3 (8-49)||(20837078-20837119)
[»] scaffold0002 (1 HSPs)
scaffold0002 (103-324)||(352269-352490)
[»] chr1 (14 HSPs)
chr1 (8-77)||(41000240-41000309)
chr1 (8-77)||(44505407-44505476)
chr1 (8-74)||(12168353-12168418)
chr1 (8-74)||(33492335-33492400)
chr1 (8-74)||(38122069-38122134)
chr1 (8-74)||(39001318-39001383)
chr1 (8-77)||(16129615-16129684)
chr1 (8-77)||(16832919-16832988)
chr1 (8-77)||(13218182-13218251)
chr1 (8-74)||(49249032-49249097)
chr1 (8-77)||(11738934-11739003)
chr1 (8-74)||(432477-432542)
chr1 (8-49)||(9667832-9667873)
chr1 (15-72)||(6244160-6244219)
[»] chr5 (14 HSPs)
chr5 (8-72)||(33434564-33434628)
chr5 (8-74)||(7314925-7314990)
chr5 (8-74)||(9404384-9404449)
chr5 (8-74)||(11723413-11723478)
chr5 (8-74)||(11766715-11766780)
chr5 (8-74)||(16904746-16904811)
chr5 (8-74)||(30607213-30607278)
chr5 (8-74)||(31845940-31846005)
chr5 (8-74)||(34456257-34456322)
chr5 (9-77)||(6269846-6269914)
chr5 (8-77)||(27167234-27167301)
chr5 (8-74)||(14344431-14344494)
chr5 (8-63)||(24835705-24835760)
chr5 (8-74)||(34869883-34869949)
[»] scaffold0076 (1 HSPs)
scaffold0076 (8-74)||(25787-25853)
[»] chr4 (19 HSPs)
chr4 (8-74)||(40995686-40995752)
chr4 (8-74)||(46692173-46692239)
chr4 (8-74)||(4839273-4839338)
chr4 (8-74)||(22047641-22047706)
chr4 (8-74)||(52618474-52618539)
chr4 (8-63)||(5273688-5273743)
chr4 (8-74)||(323398-323463)
chr4 (9-57)||(30218529-30218577)
chr4 (8-74)||(44432190-44432255)
chr4 (10-72)||(19247966-19248029)
chr4 (8-72)||(21677804-21677870)
chr4 (8-77)||(35416820-35416890)
chr4 (8-74)||(55326734-55326799)
chr4 (8-72)||(26069685-26069750)
chr4 (8-57)||(26373766-26373815)
chr4 (9-51)||(20948727-20948769)
chr4 (8-72)||(42533024-42533088)
chr4 (8-72)||(1187924-1187990)
chr4 (108-156)||(12099889-12099937)
[»] scaffold0159 (1 HSPs)
scaffold0159 (8-72)||(29036-29101)
[»] scaffold1494 (1 HSPs)
scaffold1494 (8-74)||(1524-1589)
[»] scaffold0014 (1 HSPs)
scaffold0014 (8-77)||(76588-76655)
[»] scaffold0336 (1 HSPs)
scaffold0336 (8-63)||(8712-8767)
[»] scaffold0019 (1 HSPs)
scaffold0019 (8-77)||(116704-116772)
[»] scaffold0059 (1 HSPs)
scaffold0059 (9-51)||(16611-16653)
[»] scaffold1832 (1 HSPs)
scaffold1832 (10-48)||(109-147)


Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 91 - 324
Target Start/End: Complemental strand, 1953923 - 1953690
Alignment:
Q  91 gtaatggacaacaaaatacctccctttctccccaacttaagcacaacaaaactctaattgaatgttcctctactctaaggcaagggacaaagtacaaaaa 190  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  1953923 gtaatggacaagaaaatacctccctttctccccaacttaagcacaacaaaactctaattgaatgttctcctactctaaggcaagggacaaagtacaaaaa 1953824  T
Q  191 ggttaagggttcaacaaagtaaaaatatcaaagttctaaagtgagtcgaacattaactggattttcatcaattttgggcaatttcaatgagcattgtgct 290  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1953823 ggttaagggttcaacaaactaaaaatatcaaagttctaaagtgagtcgaacattaactggattttcatcaattttgggcaatttcaatgagcattgtgct 1953724  T
Q  291 catgaatattgatagttcatgtttgaggacttga 324  Q
     |||||||||||||||||||||||||||||||||    
T  1953723 gatgaatattgatagttcatgtttgaggacttga 1953690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 103 - 324
Target Start/End: Complemental strand, 1961044 - 1960823
Alignment:
Q  103 aaaatacctccctttctccccaacttaagcacaacaaaactctaattgaatgttcctctactctaaggcaagggacaaagtacaaaaaggttaagggttc 202  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||  ||||||||||||||||||||||| || |||||||||||    
T  1961044 aaaatacatccctttctccccaacttaaacacaacaaaactctaattgaatgttcccctatcctaaggcaagggacaaagtacaataaagttaagggttc 1960945  T
Q  203 aacaaagtaaaaatatcaaagttctaaagtgagtcgaacattaactggattttcatcaattttgggcaatttcaatgagcattgtgctcatgaatattga 302  Q
    |||||||| ||| ||||||||| ||||||||||||  |||| |||| |||||| | |||||||||||||||||||||||||||||||| |||||||||||    
T  1960944 aacaaagtgaaattatcaaagtcctaaagtgagtcacacatgaactagattttgagcaattttgggcaatttcaatgagcattgtgcttatgaatattga 1960845  T
Q  303 tagttcatgtttgaggacttga 324  Q
      ||| ||||||||| ||||||    
T  1960844 cggttgatgtttgagaacttga 1960823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 103 - 324
Target Start/End: Original strand, 27952752 - 27952973
Alignment:
Q  103 aaaatacctccctttctccccaacttaagcacaacaaaactctaattgaatgttcctctactctaaggcaagggacaaagtacaaaaaggttaagggttc 202  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||  ||||||||||||||| ||||| | ||||||||||||||    
T  27952752 aaaatacttccctttctccccaacttaaacacaacaaaactctaattgaatgttcccctatcctaaggcaagggacagagtacgagaaggttaagggttc 27952851  T
Q  203 aacaaagtaaaaatatcaaagttctaaagtgagtcgaacattaactggattttcatcaattttgggcaatttcaatgagcattgtgctcatgaatattga 302  Q
    |||||||| ||||||||||||| ||| |||||||| ||||| ||||||||||| |  ||||| |||||||||||| ||||| |||||| |||||||||||    
T  27952852 aacaaagtgaaaatatcaaagtcctacagtgagtcaaacatgaactggattttgaaaaatttcgggcaatttcaaagagcactgtgcttatgaatattga 27952951  T
Q  303 tagttcatgtttgaggacttga 324  Q
     |||||||||||||||||||||    
T  27952952 cagttcatgtttgaggacttga 27952973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 103 - 324
Target Start/End: Original strand, 12696543 - 12696764
Alignment:
Q  103 aaaatacctccctttctccccaacttaagcacaacaaaactctaattgaatgttcctctactctaaggcaagggacaaagtacaaaaaggttaagggttc 202  Q
    |||||||||||||||||| ||||||||| || |||||||||||||||||||| ||| ||| |||||| ||||||||||||||||| || |||   |||||    
T  12696543 aaaatacctccctttctctccaacttaaacataacaaaactctaattgaatgatcccctattctaagacaagggacaaagtacaagaacgtttcaggttc 12696642  T
Q  203 aacaaagtaaaaatatcaaagttctaaagtgagtcgaacattaactggattttcatcaattttgggcaatttcaatgagcattgtgctcatgaatattga 302  Q
     ||||||| ||||||||||||| ||||||||| || ||||| ||||||||||| | ||||||| ||||||||||||||| ||||||||||||||||||||    
T  12696643 gacaaagtgaaaatatcaaagtcctaaagtgaatcaaacatgaactggatttttaacaattttaggcaatttcaatgagaattgtgctcatgaatattga 12696742  T
Q  303 tagttcatgtttgaggacttga 324  Q
     |||||||||||||||||||||    
T  12696743 cagttcatgtttgaggacttga 12696764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 103 - 324
Target Start/End: Complemental strand, 12186000 - 12185778
Alignment:
Q  103 aaaatacctccctttctccccaacttaagcacaacaaaactctaattgaatgttcctctactctaaggcaagggacaaagtacaaaaaggttaagggttc 202  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||  ||||||||||||||||||||||| ||||||   |||||    
T  12186000 aaaatacctccctttctccccaacttaaacacaacaaaactctaattgaatgttcccctatcctaaggcaagggacaaagtacaagaaggtttcaggttc 12185901  T
Q  203 aacaaagtaaaaatatcaaagttctaaagtgagtcgaacattaactggattttcatcaatttt-gggcaatttcaatgagcattgtgctcatgaatattg 301  Q
    |||||||| ||||||||||||| ||||||||  || ||||| | |||||||||    |||||| |||||| ||||   ||| ||||||| ||||||||||    
T  12185900 aacaaagtgaaaatatcaaagtcctaaagtggatcaaacatgagctggatttttgaaaattttcgggcaaattcatcaagcgttgtgcttatgaatattg 12185801  T
Q  302 atagttcatgtttgaggacttga 324  Q
    | | | ||||||| |||||||||    
T  12185800 acaatccatgtttaaggacttga 12185778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 12183891 - 12183822
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaaatgta 77  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  12183891 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctctaaaaaccagaaaaatgta 12183822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 31664631 - 31664700
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaaatgta 77  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  31664631 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctctaaaaaccagaaaaatgta 31664700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 12090597 - 12090666
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaaatgta 77  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  12090597 ctaactaccttgctttgtgtttctctctctagaaaagccttagtatctctttaaaaaccagaaaaatgta 12090666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 12190868 - 12190799
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaaatgta 77  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  12190868 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctctaaaaatcagaaaaatgta 12190799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 45500848 - 45500916
Alignment:
Q  9 taactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaaatgta 77  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||    
T  45500848 taactaccttgctttgtgtttctctctctagaaaagtcatagtctctctctaaaaaccagaaaaatgta 45500916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 2631421 - 2631356
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaaat 74  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  2631421 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctct-aaaaccagaaaaat 2631356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 8108025 - 8108090
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaaat 74  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  8108025 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctct-aaaaccagaaaaat 8108090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 10346442 - 10346507
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaaat 74  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  10346442 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctct-aaaaccagaaaaat 10346507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 31158413 - 31158478
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaaat 74  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  31158413 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctct-aaaaccagaaaaat 31158478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 33160207 - 33160142
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaaat 74  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  33160207 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctct-aaaaccagaaaaat 33160142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 19472400 - 19472464
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaa 72  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||    
T  19472400 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctatctctaaaaactagaaaa 19472464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 6172552 - 6172497
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaa 63  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  6172552 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctctaaaa 6172497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 8 - 72
Target Start/End: Complemental strand, 2477683 - 2477619
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaa 72  Q
    ||||||||||||||||||||||||||||||||||||||| || | ||||| ||||||||||||||    
T  2477683 ctaactaccttgctttgtgtttctctctctagaaaagccatattttctctctaaaaaccagaaaa 2477619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 22321937 - 22322001
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaa 72  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||    
T  22321937 ctaactaacttgctttgtatttctctctctagaaaagccctagtctctttctaaaaaccagaaaa 22322001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 31878626 - 31878571
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaa 63  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  31878626 ctaactaccttgctttgtgtttctctctctagaaaagctctagtctctctctaaaa 31878571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 23795119 - 23795054
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaaat 74  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||||| | ||||||||||||||    
T  23795119 ctaactaccttgctttgagtttctctctctagaaaatccctagtctctctct-aaaaccagaaaaat 23795054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 2797700 - 2797767
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaaatgta 77  Q
    |||||||||||| |||||||||||||||  | |||||||||| ||||||| |||||||||||||||||||    
T  2797700 ctaactaccttgttttgtgtttctctct--aaaaaagccctaatctctctctaaaaaccagaaaaatgta 2797767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 24482768 - 24482705
Alignment:
Q  9 taactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaa 72  Q
    ||||| |||||||||||||||||||||||||||| || |||  |||||| ||||||||||||||    
T  24482768 taactcccttgctttgtgtttctctctctagaaatgcactaacctctctctaaaaaccagaaaa 24482705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 324
Target Start/End: Original strand, 1941709 - 1941747
Alignment:
Q  286 gtgctcatgaatattgatagttcatgtttgaggacttga 324  Q
    ||||||||||||||||| || ||||||||||||||||||    
T  1941709 gtgctcatgaatattgacagctcatgtttgaggacttga 1941747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 22818437 - 22818396
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagcccta 49  Q
    ||||||||||||| |||| |||||||||||||||| ||||||    
T  22818437 ctaactaccttgccttgtatttctctctctagaaatgcccta 22818396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 180; Significance: 3e-97; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 101 - 324
Target Start/End: Complemental strand, 14478284 - 14478061
Alignment:
Q  101 acaaaatacctccctttctccccaacttaagcacaacaaaactctaattgaatgttcctctactctaaggcaagggacaaagtacaaaaaggttaagggt 200  Q
    ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  14478284 acaaaataccttcctttctccccaacttaaacacaacaaaactctaattgaatgttcccctactctaaggcaagggacaaagtacaataaggttaagggt 14478185  T
Q  201 tcaacaaagtaaaaatatcaaagttctaaagtgagtcgaacattaactggattttcatcaattttgggcaatttcaatgagcattgtgctcatgaatatt 300  Q
    ||||||| |||||||||||||||| |||||||||||| ||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  14478184 tcaacaatgtaaaaatatcaaagtcctaaagtgagtcaaacatgaactggatttttaacaattttgggcaatttcaatgagcattgtgctcatgaatatt 14478085  T
Q  301 gatagttcatgtttgaggacttga 324  Q
    || |||||||||||||||||||||    
T  14478084 gacagttcatgtttgaggacttga 14478061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 107 - 324
Target Start/End: Complemental strand, 10575116 - 10574899
Alignment:
Q  107 tacctccctttctccccaacttaagcacaacaaaactctaattgaatgttcctctactctaaggcaagggacaaagtacaaaaaggttaagggttcaaca 206  Q
    |||||| ||||||||||||||||| |||||||||||| |||||||||||||| |||   |||||||||||||| ||||||| ||||||||||||||||||    
T  10575116 tacctctctttctccccaacttaaacacaacaaaactttaattgaatgttcccctatcttaaggcaagggacatagtacaagaaggttaagggttcaaca 10575017  T
Q  207 aagtaaaaatatcaaagttctaaagtgagtcgaacattaactggattttcatcaattttgggcaatttcaatgagcattgtgctcatgaatattgatagt 306  Q
    |||||||| ||||||||| ||||||||| || ||||| ||||| ||||| |  ||||| ||||| ||||| | ||||||||||| ||||||||||  |||    
T  10575016 aagtaaaattatcaaagtcctaaagtgaatcaaacatgaactgaattttgaaaaatttcgggcattttcattaagcattgtgcttatgaatattgtcagt 10574917  T
Q  307 tcatgtttgaggacttga 324  Q
    |||||||||| |||||||    
T  10574916 tcatgtttgatgacttga 10574899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 24161392 - 24161461
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaaatgta 77  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  24161392 ctaactaccttgctttgtgtttctctctctagaaaagccatagtctctctctaaaaaccagaaaaatgta 24161461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 26510449 - 26510513
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaa 72  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  26510449 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctctaaaaaccagaaaa 26510513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 26515565 - 26515629
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaa 72  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  26515565 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctctaaaaaccagaaaa 26515629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 9932942 - 9933006
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaa 72  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  9932942 ctaactaccttgttttgtgtttctctctctagaaaagccctagtctctctctaaaaaccagaaaa 9933006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 3539072 - 3539007
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaaat 74  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  3539072 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctct-aaaaccagaaaaat 3539007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 32806899 - 32806970
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctag--tctctctttaaaaaccagaaaaatgta 77  Q
    |||||||||||||||||||||||||||||||| ||||||||||  ||||||| |||||||||||||||||||    
T  32806899 ctaactaccttgctttgtgtttctctctctaggaaagccctagtatctctctctaaaaaccagaaaaatgta 32806970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 8 - 72
Target Start/End: Complemental strand, 34006527 - 34006463
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaa 72  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||| ||| ||||||||||||||    
T  34006527 ctaactaccttgctttgtgtttctctttctagaaaagctctagtctttctctaaaaaccagaaaa 34006463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 5989139 - 5989204
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaa-gccctagtctctctttaaaaaccagaaaa 72  Q
    |||||||||||||||||||||||||||||||||||| ||| || ||||||| ||||||||||||||    
T  5989139 ctaactaccttgctttgtgtttctctctctagaaaatgccatattctctctctaaaaaccagaaaa 5989204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 21596668 - 21596733
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaaa 73  Q
    ||||||||| ||||||||||||||||||||||||| ||||||  |||||| |||||||||||||||    
T  21596668 ctaactaccatgctttgtgtttctctctctagaaatgccctaacctctctctaaaaaccagaaaaa 21596733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 64
Target Start/End: Complemental strand, 24878890 - 24878834
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaa 64  Q
    |||||||||||| |||||||||||||||||||||||| |||||| ||||| ||||||    
T  24878890 ctaactaccttgttttgtgtttctctctctagaaaagtcctagtttctctctaaaaa 24878834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 43
Target Start/End: Complemental strand, 14479585 - 14479550
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaa 43  Q
    ||||||||||||||||||||||||||||||||||||    
T  14479585 ctaactaccttgctttgtgtttctctctctagaaaa 14479550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 26604357 - 26604315
Alignment:
Q  15 ccttgctttgtgtttctctctctagaaaagccctagtctctct 57  Q
    |||||||||||||||||||||||||||| |||||| |||||||    
T  26604357 ccttgctttgtgtttctctctctagaaatgccctactctctct 26604315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 15642428 - 15642380
Alignment:
Q  23 tgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaaat 74  Q
    |||||||||||||||||| ||||||||||||||||   ||||||||||||||    
T  15642428 tgtgtttctctctctagacaagccctagtctctct---aaaaccagaaaaat 15642380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 156; Significance: 7e-83; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 101 - 324
Target Start/End: Complemental strand, 184494 - 184272
Alignment:
Q  101 acaaaatacctccctttctccccaacttaagcacaacaaaactctaattgaatgttcctctactctaaggcaagggacaaagtacaaaaaggttaagggt 200  Q
    |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| | |||||||||| ||||||||||||||| ||||||||||||    
T  184494 acaaaatacctccctttctccccaacttgaacacaacaaaactctaattgaatgttccccaactctaaggcgagggacaaagtacaataaggttaagggt 184395  T
Q  201 tcaacaaagtaaaaatatcaaagttctaaagtgagtcgaacattaactggattttcatcaattttgggcaatttcaatgagcattgtgctcatgaatatt 300  Q
    |||||||||||||| ||||||||| ||| |||| ||| ||||| ||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||    
T  184394 tcaacaaagtaaaattatcaaagtcctacagtgcgtcaaacatgaactggatttttaacaa-tttgggcaatttcaatgagcattgtgctcatgaatatt 184296  T
Q  301 gatagttcatgtttgaggacttga 324  Q
    || |||||||||||||||||||||    
T  184295 gacagttcatgtttgaggacttga 184272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 156; Significance: 7e-83; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 101 - 324
Target Start/End: Complemental strand, 29226028 - 29225806
Alignment:
Q  101 acaaaatacctccctttctccccaacttaagcacaacaaaactctaattgaatgttcctctactctaaggcaagggacaaagtacaaaaaggttaagggt 200  Q
    |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| | |||||||||| ||||||||||||||| ||||||||||||    
T  29226028 acaaaatacctccctttctccccaacttgaacacaacaaaactctaattgaatgttccccaactctaaggcgagggacaaagtacaataaggttaagggt 29225929  T
Q  201 tcaacaaagtaaaaatatcaaagttctaaagtgagtcgaacattaactggattttcatcaattttgggcaatttcaatgagcattgtgctcatgaatatt 300  Q
    |||||||||||||| ||||||||| ||| |||| ||| ||||| ||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||    
T  29225928 tcaacaaagtaaaattatcaaagtcctacagtgcgtcaaacatgaactggatttttaacaa-tttgggcaatttcaatgagcattgtgctcatgaatatt 29225830  T
Q  301 gatagttcatgtttgaggacttga 324  Q
    || |||||||||||||||||||||    
T  29225829 gacagttcatgtttgaggacttga 29225806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 101 - 324
Target Start/End: Complemental strand, 29339327 - 29339105
Alignment:
Q  101 acaaaatacctccctttctccccaacttaagcacaacaaaactctaattgaatgttcctctactctaaggcaagggacaaagtacaaaaaggttaagggt 200  Q
    |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| | |||||||||| ||||||||||||||| ||||||||||||    
T  29339327 acaaaatacctccctttctccccaacttgaacacaacaaaactctaattgaatgttccccaactctaaggcgagggacaaagtacaataaggttaagggt 29339228  T
Q  201 tcaacaaagtaaaaatatcaaagttctaaagtgagtcgaacattaactggattttcatcaattttgggcaatttcaatgagcattgtgctcatgaatatt 300  Q
    |||||||||||||| ||||||||| ||| |||| ||| ||||| ||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||    
T  29339227 tcaacaaagtaaaattatcaaagtcctacagtgcgtcaaacatgaactggatttttaacaa-tttgggcaatttcaatgagcattgtgctcatgaatatt 29339129  T
Q  301 gatagttcatgtttgaggacttga 324  Q
    || |||||||||||||||||||||    
T  29339128 gacagttcatgtttgaggacttga 29339105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 32522954 - 32522885
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaaatgta 77  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  32522954 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctgtaaaaacaagaaaaatgta 32522885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 36040399 - 36040468
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaaatgta 77  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||    
T  36040399 ctaactaccttgctttgtgtttctctctctacaaaagccatagtctctctctaaaaaccagaaaaatgta 36040468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 23925168 - 23925235
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaaatgta 77  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||    
T  23925168 ctaactaccttgctttgtgtttctctctctagaaaagccccagtctctc--taaaaaccagaaaaatgta 23925235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 29223740 - 29223675
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaaat 74  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  29223740 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctct-aaaaccagaaaaat 29223675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 29337039 - 29336974
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaaat 74  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  29337039 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctct-aaaaccagaaaaat 29336974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 24663268 - 24663337
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaaatgta 77  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||    
T  24663268 ctaacaaccttgctttgtgtttctctctctagaaaagccctagtctccctctcaaaaccagaaaaatgta 24663337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 5784661 - 5784726
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctct-ttaaaaaccagaaaa 72  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  5784661 ctaacttccttgctttgtgtttctctctctagaaaagccctagtctctctctaaaaaaccagaaaa 5784726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 13230479 - 13230545
Alignment:
Q  9 taactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaaatgta 77  Q
    ||||||||||||||||||||||||  |||||||||||||||| |||||| |||||||||||||||||||    
T  13230479 taactaccttgctttgtgtttctc--tctagaaaagccctagcctctctctaaaaaccagaaaaatgta 13230545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 43991556 - 43991487
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaaatgta 77  Q
    ||||||||||||| |||||||||| ||||||||||||||  ||||||||| |||||||||||||||||||    
T  43991556 ctaactaccttgccttgtgtttctatctctagaaaagccacagtctctctctaaaaaccagaaaaatgta 43991487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 28458014 - 28458078
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaa 72  Q
    ||||||||||||||||||||||||||||||||||| ||||||  |||||| ||||||||||||||    
T  28458014 ctaactaccttgctttgtgtttctctctctagaaatgccctaacctctctctaaaaaccagaaaa 28458078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 42702343 - 42702413
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaa-gccctagtctctctttaaaaaccagaaaaatgta 77  Q
    |||||||||||||||||||||||||||||||||||| ||||||  |||||| ||||| | |||||||||||    
T  42702343 ctaactaccttgctttgtgtttctctctctagaaaatgccctaacctctctctaaaaccaagaaaaatgta 42702413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 14700665 - 14700617
Alignment:
Q  9 taactaccttgctttgtgtttctctctctagaaaagccctagtctctct 57  Q
    ||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  14700665 taactaccttgctttgtgtttttctctctataaaagccctagtctctct 14700617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 72
Target Start/End: Complemental strand, 27257408 - 27257345
Alignment:
Q  10 aactaccttgctttgtgtttctctctctagaaaa-gccctagtctctctttaaaaaccagaaaa 72  Q
    |||||||||| ||||||||||||||||||||||| | | || ||||||| ||||||||||||||    
T  27257408 aactaccttgttttgtgtttctctctctagaaaatgtcatattctctctctaaaaaccagaaaa 27257345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 51
Target Start/End: Original strand, 36557659 - 36557702
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagt 51  Q
    |||||||||||||| |||||||||||||||||||||||| ||||    
T  36557659 ctaactaccttgctatgtgtttctctctctagaaaagccttagt 36557702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 36668006 - 36668072
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaa-gccctagtctctctttaaaaaccagaaaaa 73  Q
    ||||||||||||||||||||||||||||||| |||| ||||||  |||| | |||||| ||||||||    
T  36668006 ctaactaccttgctttgtgtttctctctctaaaaaatgccctaacctctgtctaaaaatcagaaaaa 36668072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 11651834 - 11651777
Alignment:
Q  15 ccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaa 72  Q
    |||||||||||||||||||||||| ||| | | || ||||||| ||||||||||||||    
T  11651834 ccttgctttgtgtttctctctctataaatgtcatactctctctctaaaaaccagaaaa 11651777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 8687810 - 8687877
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaa-gccctagtctctctttaaaaaccagaaaaatgta 77  Q
    |||||||||||||||||||||  ||||||||||||| ||||||  |||||| | |||||||||||||||||    
T  8687810 ctaactaccttgctttgtgtt--tctctctagaaaatgccctaacctctctct-aaaaccagaaaaatgta 8687877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0147 (Bit Score: 150; Significance: 3e-79; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 103 - 324
Target Start/End: Complemental strand, 6109 - 5888
Alignment:
Q  103 aaaatacctccctttctccccaacttaagcacaacaaaactctaattgaatgttcctctactctaaggcaagggacaaagtacaaaaaggttaagggttc 202  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||  ||| |||||||||||||||||||||||| ||||||  ||||||    
T  6109 aaaatacctccctttctccccaacttaaacacaacaaaactctaatcgaatgttctcctattctaaggcaagggacaaagtacaagaaggtttcgggttc 6010  T
Q  203 aacaaagtaaaaatatcaaagttctaaagtgagtcgaacattaactggattttcatcaattttgggcaatttcaatgagcattgtgctcatgaatattga 302  Q
    |||||||| ||||||||||||| ||||||||  || ||||| ||||||||||| | ||||||| | ||||||||||||||||||||||||||||||||||    
T  6009 aacaaagtgaaaatatcaaagtcctaaagtggatcaaacatgaactggatttttaacaattttagacaatttcaatgagcattgtgctcatgaatattga 5910  T
Q  303 tagttcatgtttgaggacttga 324  Q
    ||||||||||||||||||||||    
T  5909 tagttcatgtttgaggacttga 5888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 150; Significance: 3e-79; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 103 - 324
Target Start/End: Complemental strand, 27352788 - 27352568
Alignment:
Q  103 aaaatacctccctttctccccaacttaagcacaacaaaactctaattgaatgttcctctactctaaggcaagggacaaagtacaaaaaggttaagggttc 202  Q
    |||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||  ||||||    
T  27352788 aaaatacctccctttctccccaacttaaac-caacaaaactctaattgaatgttcccctattctaaggcaagggacaaagtacaagaaggtttcgggttc 27352690  T
Q  203 aacaaagtaaaaatatcaaagttctaaagtgagtcgaacattaactggattttcatcaattttgggcaatttcaatgagcattgtgctcatgaatattga 302  Q
    |||||||| ||||||||||||| ||||||||  || ||||| ||||||||||| | ||||||| | ||||||||||||||||||||||||||||||||||    
T  27352689 aacaaagtgaaaatatcaaagtcctaaagtggatcaaacatgaactggatttttaacaattttagtcaatttcaatgagcattgtgctcatgaatattga 27352590  T
Q  303 tagttcatgtttgaggacttga 324  Q
    ||||||||||||||||||||||    
T  27352589 tagttcatgtttgaggacttga 27352568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 103 - 324
Target Start/End: Original strand, 36738349 - 36738570
Alignment:
Q  103 aaaatacctccctttctccccaacttaagcacaacaaaactctaattgaatgttcctctactctaaggcaagggacaaagtacaaaaaggttaagggttc 202  Q
    ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||  ||   |||||||||||||||||||||| ||||||||||||||    
T  36738349 aaaatacctccatttctccccaacttaaacacaacaaaactctaattgaatgttcccttatcataaggcaagggacaaagtacaagaaggttaagggttc 36738448  T
Q  203 aacaaagtaaaaatatcaaagttctaaagtgagtcgaacattaactgga-ttttcatcaattttgggcaatttcaatgagcattgtgctcatgaatattg 301  Q
    |||||||| ||||||||||||| |||||||||||| ||||| ||||||| |||| |  ||||| | ||||||||||| ||||||||||| ||||||||||    
T  36738449 aacaaagtgaaaatatcaaagtcctaaagtgagtcaaacatgaactggatttttgaaaaatttcgagcaatttcaat-agcattgtgcttatgaatattg 36738547  T
Q  302 atagttcatgtttgaggacttga 324  Q
    | |||||||||||||| ||||||    
T  36738548 acagttcatgtttgagaacttga 36738570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 34006897 - 34006963
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaaatgt 76  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  34006897 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctc--taaaaaccagaaaaatgt 34006963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 8743420 - 8743485
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaaat 74  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  8743420 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctct-aaaaccagaaaaat 8743485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 9068304 - 9068369
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaaat 74  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  9068304 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctct-aaaaccagaaaaat 9068369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 28370118 - 28370053
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaaat 74  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  28370118 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctct-aaaaccagaaaaat 28370053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 41577468 - 41577533
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaaat 74  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  41577468 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctct-aaaaccagaaaaat 41577533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 72
Target Start/End: Complemental strand, 27348051 - 27347988
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaa 72  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  27348051 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctct-aaaaccagaaaa 27347988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 3298827 - 3298760
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctct-ttaaaaaccagaaaaat 74  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||    
T  3298827 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctctctaaaaccagaaaaat 3298760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 28926280 - 28926335
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaa 63  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  28926280 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctctaaaa 28926335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 16580110 - 16580045
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaaat 74  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||    
T  16580110 ctaactaccttgctttgtgtttctctctctagaaaatccctagtctctctct-aaaaccagaaaaat 16580045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 22180626 - 22180561
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaaat 74  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  22180626 ctaactaccttgctttttgtttctctctctagaaaagccctagtctctctct-aaaaccagaaaaat 22180561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 11309124 - 11309187
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaaat 74  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||||| | ||||||||||||||    
T  11309124 ctaactaccttgctttgtgtttctc--tctagaaaagccctagtctctctct-aaaaccagaaaaat 11309187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 16958574 - 16958509
Alignment:
Q  9 taactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaaatgt 76  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||| | ||||||||||||||||    
T  16958574 taactaccttgctttgtgtttctctctcta-aaaagccctagcctctctct-aaaaccagaaaaatgt 16958509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 24040741 - 24040674
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaaatgta 77  Q
    |||||||| ||| ||| ||||||||||||||||||||| ||||||||||   ||||||||||||||||||    
T  24040741 ctaactacattgatttatgtttctctctctagaaaagctctagtctctc--aaaaaaccagaaaaatgta 24040674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 43
Target Start/End: Complemental strand, 12538182 - 12538147
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaa 43  Q
    |||||||||||| |||||||||||||||||||||||    
T  12538182 ctaactaccttgatttgtgtttctctctctagaaaa 12538147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 148; Significance: 4e-78; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 101 - 324
Target Start/End: Complemental strand, 22096551 - 22096328
Alignment:
Q  101 acaaaatacctccctttctccccaacttaagcacaacaaaactctaattgaatgttcctctactctaaggcaagggacaaagtacaaaaaggttaagggt 200  Q
    |||||||||||||||||||| ||||||| | |||||||||| |||||||||||||||| |||||||||||| ||||||||||||||| |||||||| |||    
T  22096551 acaaaatacctccctttctctccaacttgaacacaacaaaattctaattgaatgttccgctactctaaggcgagggacaaagtacaataaggttaaaggt 22096452  T
Q  201 tcaacaaagtaaaaatatcaaagttctaaagtgagtcgaacattaactggattttcatcaattttgggcaatttcaatgagcattgtgctcatgaatatt 300  Q
    |||||||| ||||||||||||||| |||||||| ||| ||||| ||||||||||| | ||||||| ||||||||||||||||| ||||||||||||||||    
T  22096451 tcaacaaaataaaaatatcaaagtcctaaagtgcgtcaaacatgaactggatttttaacaattttaggcaatttcaatgagcaatgtgctcatgaatatt 22096352  T
Q  301 gatagttcatgtttgaggacttga 324  Q
    || ||||||||||| |||||||||    
T  22096351 gacagttcatgtttaaggacttga 22096328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 101 - 324
Target Start/End: Complemental strand, 23384095 - 23383872
Alignment:
Q  101 acaaaatacctccctttctccccaacttaagcacaacaaaactctaattgaatgttcctctactctaaggcaagggacaaagtacaaaaaggttaagggt 200  Q
    |||||||||||||||||||||||||||| | | |||||||||||||||||||| |||| |||||||||||| ||||||||||||||  |||| |||||||    
T  23384095 acaaaatacctccctttctccccaacttgaacccaacaaaactctaattgaattttcccctactctaaggcgagggacaaagtacactaagggtaagggt 23383996  T
Q  201 tcaacaaagtaaaaatatcaaagttctaaagtgagtcgaacattaactggattttcatcaattttgggcaatttcaatgagcattgtgctcatgaatatt 300  Q
    |||||||||||||| ||||||||| |||||||  ||| ||||| ||||||||||| | ||||||| ||||||||||||||||||||||||  ||||||||    
T  23383995 tcaacaaagtaaaattatcaaagtcctaaagtacgtcaaacatgaactggatttttaacaattttaggcaatttcaatgagcattgtgcttttgaatatt 23383896  T
Q  301 gatagttcatgtttgaggacttga 324  Q
    || |||||||||||||||||||||    
T  23383895 gacagttcatgtttgaggacttga 23383872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 48168330 - 48168399
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaaatgta 77  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  48168330 ctaactaccttgcttcgtgtttctctctctagaaaagccctagtctctctctaaaaaccagaaaaatgta 48168399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 3588425 - 3588360
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaaat 74  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  3588425 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctct-aaaaccagaaaaat 3588360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 4755002 - 4755069
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaaatgta 77  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||    
T  4755002 ctaactaccttgctttgtgtttctc--tctagaaaagccctagtctctctctaaaaaccagaaaaatgta 4755069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 7653359 - 7653424
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaaat 74  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  7653359 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctct-aaaaccagaaaaat 7653424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 10386207 - 10386272
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaaat 74  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  10386207 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctct-aaaaccagaaaaat 10386272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 23411702 - 23411637
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaaat 74  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  23411702 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctct-aaaaccagaaaaat 23411637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 27030820 - 27030885
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaaat 74  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  27030820 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctct-aaaaccagaaaaat 27030885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 9989421 - 9989366
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaa 63  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  9989421 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctctaaaa 9989366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 52308222 - 52308277
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaa 63  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  52308222 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctctaaaa 52308277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 8615528 - 8615463
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaaat 74  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||    
T  8615528 ctaactaccttgctttgtgtttctctctctagaaaagccctagtttctctct-aaaaccagaaaaat 8615463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 8 - 72
Target Start/End: Complemental strand, 22097692 - 22097628
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaa 72  Q
    ||||||||||| ||||||||||||||||||||||||| |||||| ||||| ||||||||||||||    
T  22097692 ctaactaccttactttgtgtttctctctctagaaaagtcctagtttctctctaaaaaccagaaaa 22097628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 23385421 - 23385366
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaa 63  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  23385421 ctaactaccttgctttttgtttctctctctagaaaagccctagtctctctctaaaa 23385366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 36469572 - 36469636
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaaat 74  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  36469572 ctaactaccttgctt-gtgtttctctctctagaaaagccctagtctctctct-aaaaccagaaaaat 36469636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 20963790 - 20963859
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaa-gccctagtctctctttaaaaaccagaaaaatgta 77  Q
    |||||||||||||||||||||||||||||||||||| ||||||  |||||| | |||||||||||||||||    
T  20963790 ctaactaccttgctttgtgtttctctctctagaaaatgccctaacctctctct-aaaaccagaaaaatgta 20963859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 27850687 - 27850754
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaaatgta 77  Q
    ||||||||||||||| |||||||||||||||||||||||  ||||||||| | |||||||||||||||||    
T  27850687 ctaactaccttgctt-gtgtttctctctctagaaaagcctcagtctctctct-aaaaccagaaaaatgta 27850754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 72
Target Start/End: Complemental strand, 33248013 - 33247949
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaa 72  Q
    ||||||||||||||||||||||||||||||| ||| |||| |  |||||| ||||||||||||||    
T  33248013 ctaactaccttgctttgtgtttctctctctaaaaatgccccaacctctctctaaaaaccagaaaa 33247949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 26335141 - 26335104
Alignment:
Q  9 taactaccttgctttgtgtttctctctctagaaaagcc 46  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  26335141 taactaccttgctttgtgtttttctctctagaaaagcc 26335104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 44
Target Start/End: Original strand, 37471823 - 37471859
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaag 44  Q
    |||||||| ||||||||||||||||||||||||||||    
T  37471823 ctaactactttgctttgtgtttctctctctagaaaag 37471859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 20837119 - 20837078
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagcccta 49  Q
    ||||||||||||| |||| |||||||||||||||| ||||||    
T  20837119 ctaactaccttgccttgtatttctctctctagaaatgcccta 20837078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 146; Significance: 7e-77; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 103 - 324
Target Start/End: Original strand, 352269 - 352490
Alignment:
Q  103 aaaatacctccctttctccccaacttaagcacaacaaaactctaattgaatgttcctctactctaaggcaagggacaaagtacaaaaaggttaagggttc 202  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||| | ||||  ||||||    
T  352269 aaaatacctccctttctccccaacttaaacacaacaaaactctaattgaatgttcccctattctaaggcaagggacaaagtgcaagacggtttcgggttc 352368  T
Q  203 aacaaagtaaaaatatcaaagttctaaagtgagtcgaacattaactggattttcatcaattttgggcaatttcaatgagcattgtgctcatgaatattga 302  Q
    |||||||| ||||||||||||| ||||||||  || | ||| ||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||    
T  352369 aacaaagtgaaaatatcaaagtcctaaagtggatcaagcatgaactggatttttaacaattttaggcaatttcaatgagcattgtgctcatgaatattga 352468  T
Q  303 tagttcatgtttgaggacttga 324  Q
     |||||||||||||||||||||    
T  352469 cagttcatgtttgaggacttga 352490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 4e-29; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 41000240 - 41000309
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaaatgta 77  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  41000240 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctctaaaaaccagaaaaatgta 41000309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 44505407 - 44505476
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaaatgta 77  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  44505407 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctctaaaaaccagaaaaatgta 44505476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 12168353 - 12168418
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaaat 74  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  12168353 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctct-aaaaccagaaaaat 12168418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 33492335 - 33492400
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaaat 74  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  33492335 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctct-aaaaccagaaaaat 33492400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 38122069 - 38122134
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaaat 74  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  38122069 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctct-aaaaccagaaaaat 38122134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 39001318 - 39001383
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaaat 74  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  39001318 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctct-aaaaccagaaaaat 39001383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 16129684 - 16129615
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaaatgta 77  Q
    ||||||| ||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||    
T  16129684 ctaactatcttgctttgtgtttctctctctataaaagccctagtctctttctaaaaaccagaaaaatgta 16129615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 16832919 - 16832988
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaaatgta 77  Q
    ||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||    
T  16832919 ctaactaccttactttgtgtttctctctctagaaaagccctaggctctctctaaaatccagaaaaatgta 16832988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 13218182 - 13218251
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaaatgta 77  Q
    ||||| ||||||||||||||||||||||||| ||||| ||||||||||||  ||||||||||||||||||    
T  13218182 ctaaccaccttgctttgtgtttctctctctaaaaaaggcctagtctctctccaaaaaccagaaaaatgta 13218251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 49249097 - 49249032
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaaat 74  Q
    ||||||||||| |||||||||||||||| ||||||||||| ||||||||| | ||||||||||||||    
T  49249097 ctaactaccttactttgtgtttctctctttagaaaagccccagtctctctct-aaaaccagaaaaat 49249032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 11738934 - 11739003
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaa-gccctagtctctctttaaaaaccagaaaaatgta 77  Q
    |||||||||||||||||||||||||||| ||||||| ||||||  |||||| | |||||||||||||||||    
T  11738934 ctaactaccttgctttgtgtttctctctatagaaaatgccctaacctctctct-aaaaccagaaaaatgta 11739003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 432477 - 432542
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaaat 74  Q
    ||||||||||||| |||| |||||||||||||||| | | || ||||||| | ||||||||||||||    
T  432477 ctaactaccttgccttgtatttctctctctagaaatgtcataatctctctct-aaaaccagaaaaat 432542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 9667832 - 9667873
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagcccta 49  Q
    ||||||||||||| |||| |||||||||||||||| ||||||    
T  9667832 ctaactaccttgccttgtatttctctctctagaaatgcccta 9667873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 6244219 - 6244160
Alignment:
Q  15 ccttgctttgtgtttctctctctagaaaagcccta--gtctctctttaaaaaccagaaaa 72  Q
    |||||||||||||||||||| ||||||| | ||||   ||||||| ||||||||||||||    
T  6244219 ccttgctttgtgtttctctcactagaaatgtcctaatctctctctctaaaaaccagaaaa 6244160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 8 - 72
Target Start/End: Complemental strand, 33434628 - 33434564
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaa 72  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  33434628 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctctaaaaaccagaaaa 33434564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 7314990 - 7314925
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaaat 74  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  7314990 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctct-aaaaccagaaaaat 7314925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 9404449 - 9404384
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaaat 74  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  9404449 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctct-aaaaccagaaaaat 9404384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 11723413 - 11723478
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaaat 74  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  11723413 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctct-aaaaccagaaaaat 11723478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 11766780 - 11766715
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaaat 74  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  11766780 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctct-aaaaccagaaaaat 11766715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 16904746 - 16904811
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaaat 74  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  16904746 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctct-aaaaccagaaaaat 16904811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 30607213 - 30607278
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaaat 74  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  30607213 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctct-aaaaccagaaaaat 30607278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 31846005 - 31845940
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaaat 74  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  31846005 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctct-aaaaccagaaaaat 31845940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 34456322 - 34456257
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaaat 74  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  34456322 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctct-aaaaccagaaaaat 34456257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 6269914 - 6269846
Alignment:
Q  9 taactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaaatgta 77  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  6269914 taactacatttctttgtgtttctctctctagaaaagccctagtctctctctaaaaactagaaaaatgta 6269846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 27167234 - 27167301
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaaatgta 77  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| |  ||||||||||||||||    
T  27167234 ctaactaccttgctttgtgtttctctctctagaaaagccatagtctctctct--aaaccagaaaaatgta 27167301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 14344494 - 14344431
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaaat 74  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||   ||||||||||||||    
T  14344494 ctaactaccttgctttgagtttctctctctagaaaagccctagtctctct---aaaaccagaaaaat 14344431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 24835760 - 24835705
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaa 63  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  24835760 ctaactaccttgatttgtgtttctctctctagaaaagccctagtctctctctaaaa 24835705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 34869883 - 34869949
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaaat 74  Q
    |||||||||||| |||||||||||||||||||||| ||||||  |||||| ||||||||||||||||    
T  34869883 ctaactaccttgttttgtgtttctctctctagaaatgccctaacctctctctaaaaaccagaaaaat 34869949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 25787 - 25853
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaaat 74  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  25787 ctaactaccttgctttgtgtttctctctctagaaaagcactagtctctctctaaaaaccagaaaaat 25853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 6e-25; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 40995686 - 40995752
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaaat 74  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  40995686 ctaactaccttgatttgtgtttctctctctagaaaagccctagtctctctctaaaaaccagaaaaat 40995752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 46692173 - 46692239
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaaat 74  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  46692173 ctaactaccttgctttgtgtttctatctctagaaaagccctagtctctctctaaaaaccagaaaaat 46692239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 4839273 - 4839338
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaaat 74  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  4839273 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctct-aaaaccagaaaaat 4839338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 22047706 - 22047641
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaaat 74  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  22047706 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctct-aaaaccagaaaaat 22047641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 52618539 - 52618474
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaaat 74  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  52618539 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctct-aaaaccagaaaaat 52618474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 5273688 - 5273743
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaa 63  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  5273688 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctctaaaa 5273743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 323463 - 323398
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaaat 74  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  323463 ctaactatcttgctttgtgtttctctctctagaaaagccctagtctctctct-aaaaccagaaaaat 323398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 30218529 - 30218577
Alignment:
Q  9 taactaccttgctttgtgtttctctctctagaaaagccctagtctctct 57  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  30218529 taactaccttgctttgtgtttctctctctagaaaagccctagtctctct 30218577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 44432190 - 44432255
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaaat 74  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||||| | ||||||||||||||    
T  44432190 ctaactaccttgctttgagtttctctctctagaaaatccctagtctctctct-aaaaccagaaaaat 44432255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 10 - 72
Target Start/End: Original strand, 19247966 - 19248029
Alignment:
Q  10 aactaccttgctttgtgtttctctctctagaaaa-gccctagtctctctttaaaaaccagaaaa 72  Q
    |||||||||||||||||||||||||||||||||| ||||||  |||||| ||||||||||||||    
T  19247966 aactaccttgctttgtgtttctctctctagaaaatgccctaacctctctctaaaaaccagaaaa 19248029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 21677804 - 21677870
Alignment:
Q  8 ctaactaccttgctttgtgtttctc--tctctagaaaagccctagtctctctttaaaaaccagaaaa 72  Q
    |||||||| ||||||||||||||||  ||||||||||| ||||||||||||| ||||||||||||||    
T  21677804 ctaactactttgctttgtgtttctctctctctagaaaatccctagtctctctctaaaaaccagaaaa 21677870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 35416820 - 35416890
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctct-ttaaaaaccagaaaaatgta 77  Q
    ||||||| ||| ||||||||||||||||||| |||||||||||||||||| | |||||||| |||||||||    
T  35416820 ctaactatctttctttgtgtttctctctctaaaaaagccctagtctctctctaaaaaaccataaaaatgta 35416890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 55326799 - 55326734
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaaat 74  Q
    ||||||| |||||| |||||||||||||||||||| |||||||||||||| | ||||||||||||||    
T  55326799 ctaactatcttgctatgtgtttctctctctagaaatgccctagtctctctct-aaaaccagaaaaat 55326734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 8 - 72
Target Start/End: Complemental strand, 26069750 - 26069685
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaa-gccctagtctctctttaaaaaccagaaaa 72  Q
    |||||||||||||||||||||||||||||||||||| ||||||  |||||| ||||||| ||||||    
T  26069750 ctaactaccttgctttgtgtttctctctctagaaaatgccctaacctctctctaaaaactagaaaa 26069685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 26373766 - 26373815
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctct 57  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  26373766 ctaactaccttgctttgtgtttctctctctagaaaagtcatagtctctct 26373815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 9 - 51
Target Start/End: Complemental strand, 20948769 - 20948727
Alignment:
Q  9 taactaccttgctttgtgtttctctctctagaaaagccctagt 51  Q
    ||||||||||||||||||||||||||||||||||| |||||||    
T  20948769 taactaccttgctttgtgtttctctctctagaaaaaccctagt 20948727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 42533024 - 42533088
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaa 72  Q
    ||||| ||||||||||||||||||||||||||||| ||||||  |||||| |||||  |||||||    
T  42533024 ctaaccaccttgctttgtgtttctctctctagaaatgccctaacctctctctaaaatgcagaaaa 42533088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 72
Target Start/End: Complemental strand, 1187990 - 1187924
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaa-gccctagtctctct-ttaaaaaccagaaaa 72  Q
    |||||||||||||||||||||||||| ||||||||| ||||||  |||||| | |||||||||||||    
T  1187990 ctaactaccttgctttgtgtttctctgtctagaaaatgccctaacctctctctaaaaaaccagaaaa 1187924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 156
Target Start/End: Original strand, 12099889 - 12099937
Alignment:
Q  108 acctccctttctccccaacttaagcacaacaaaactctaattgaatgtt 156  Q
    ||||||||||||||||||||||  || ||||| || |||||||||||||    
T  12099889 acctccctttctccccaacttatacaaaacaacaccctaattgaatgtt 12099937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 29036 - 29101
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctct-ttaaaaaccagaaaa 72  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  29036 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctctaaaaaaccagaaaa 29101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1494 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold1494
Description:

Target: scaffold1494; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 1589 - 1524
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaaat 74  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||    
T  1589 ctaactaccttgctttgtgtttctctctctagaaaagccctagtttctctct-aaaaccagaaaaat 1524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 76588 - 76655
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaaaccagaaaaatgta 77  Q
    ||||||||||||||||||||||||||||||||| ||||| |||||||||  |||||||||||||||||||    
T  76588 ctaactaccttgctttgtgtttctctctctagagaagccatagtctctc--taaaaaccagaaaaatgta 76655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0336 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0336
Description:

Target: scaffold0336; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 8767 - 8712
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaagccctagtctctctttaaaa 63  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  8767 ctaactaccttgccttgtgtttctctctctagaaaagccctagtctctctctaaaa 8712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 116704 - 116772
Alignment:
Q  8 ctaactaccttgctttgtgtttctctctctagaaaa-gccctagtctctctttaaaaaccagaaaaatgta 77  Q
    |||||||||||||||||||||||||||||||||||| ||||||  |||||  |||||||||||||||||||    
T  116704 ctaactaccttgctttgtgtttctctctctagaaaatgccctaacctctc--taaaaaccagaaaaatgta 116772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 16611 - 16653
Alignment:
Q  9 taactaccttgctttgtgtttctctctctagaaaagccctagt 51  Q
    |||||||||| ||||||||||||||||||||||||||||||||    
T  16611 taactaccttactttgtgtttctctctctagaaaagccctagt 16653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1832 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1832
Description:

Target: scaffold1832; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 48
Target Start/End: Original strand, 109 - 147
Alignment:
Q  10 aactaccttgctttgtgtttctctctctagaaaagccct 48  Q
    |||||||||||||||| |||||||||||||||| |||||    
T  109 aactaccttgctttgtctttctctctctagaaatgccct 147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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