View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2935R-Insertion-1 (Length: 1020)
Name: NF2935R-Insertion-1
Description: NF2935R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2935R-Insertion-1 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 612; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 612; E-Value: 0
Query Start/End: Original strand, 199 - 838
Target Start/End: Original strand, 46884989 - 46885627
Alignment:
| Q |
199 |
cagtggtgttggttcattgttgctgatcttggtgaggactgctatgtgcgtgtttacccattgtatcatatcccatgaaagtttttgagaagttgcaatt |
298 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46884989 |
cagtggtgttggttcattgttgctgatcttggtgaggactgctatgtgcgtgtttacccattgtatcatatcccatgaaagtttttgagaagttgcaatt |
46885088 |
T |
|
| Q |
299 |
gtgtgatttgaacaatttcatttagtatcctataaaaaataaattttcaaatggcatgtgtcatgtagttttggtgtcacaattgataagagcaattggc |
398 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
46885089 |
gtgtgatttgaacaatttcatttagtatcctataaaaaataaattttcaaatggcatgtgtcatgtagttttggtgtcacaattgataagagaaattggc |
46885188 |
T |
|
| Q |
399 |
ttttcactatgttgatgaaagttgcatgaactctaaagtcatgattgccggaggatgatgaccagctctgcaattgtttacttgatgttttagactcaaa |
498 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
46885189 |
ttttcactatgttgatgaaagttgcatgaactctaaagtcatgattgccggaggatgatgagcagctctgcaattgtttacttgatgttttagactcaaa |
46885288 |
T |
|
| Q |
499 |
taagtatgggtattattttttggttgattataacatgattaaatgaatgtttaagactcttatatatgttataatgctatactcatgagtgaatattcta |
598 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46885289 |
taagtatgggtattattttttggttgattataacatgattaaatgaatgtttaagactcttatatatgttataatgctatactcatgagtgaatattcta |
46885388 |
T |
|
| Q |
599 |
tacttaaaacttatttagattttgttatgtgtgtaggatgctttataaacccaacataccttatactttattgacttagataaattctagcaagacttta |
698 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
46885389 |
tactt-aaacttatttagattttgttatgtgtgtaggatgctttataaacccaacataccttatactttattgacttagataaattttagcaagacttta |
46885487 |
T |
|
| Q |
699 |
gcaaagatatacttttcaagcatttggtttatggtagaaaaacatcaccagtcaaacagattataaatttcacagttgattccaatttctatttgaccac |
798 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
46885488 |
gcaaagatatacttttcaagcatttggtttatggtagaaaaacatcaccagtcaaacagattataaatttcacagttgattacaatttctatttgaccac |
46885587 |
T |
|
| Q |
799 |
taatgcaagcatatgactttgtaatgcatttgttatttcc |
838 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||| |
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| T |
46885588 |
taatgcaagcaaatgactttgtaatgcatttgttatttcc |
46885627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 199 - 396
Target Start/End: Complemental strand, 37685346 - 37685148
Alignment:
| Q |
199 |
cagtggtgttggt-tcattgttgctgatcttggtgaggactgctatgtgcgtgtttacccattgtatcatatcccatgaaagtttttgagaagttgcaat |
297 |
Q |
| |
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|||||||| |||| ||||||||||||||||| || |||||| ||||||| ||||||| ||| |||| ||||||||| ||| |||||| |||||||||| |
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| T |
37685346 |
cagtggtgctggtatcattgttgctgatctttgtaaggactcttatgtgcatgtttacacatggtattatatcccatagaagattttgaaaagttgcaat |
37685247 |
T |
|
| Q |
298 |
tgtgtgatttgaacaatttcatttagtatcctataaaaaataaattttcaaatggcatgtgtcatgtagttttggtgtcacaattgataagagcaattg |
396 |
Q |
| |
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|||||||||| ||||| |||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| || ||||| |
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| T |
37685246 |
tgtgtgatttcaacaagttcatttagtattatataaaaattaaattttcaaatggcatgtgtcatgctgttttggtgtcacaattgataaaagaaattg |
37685148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 41 - 115
Target Start/End: Original strand, 46884830 - 46884904
Alignment:
| Q |
41 |
ttaagcacttatacgactgcattggacgatttattgggtcagnnnnnnncactttcttcatctacttgatgaggg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
46884830 |
ttaagcacttatacgactgcattggacgatttactgggtcagtttttttcactttcttcatctacttgatgaggg |
46884904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 563 - 700
Target Start/End: Complemental strand, 37685110 - 37684974
Alignment:
| Q |
563 |
tatgttataatgctatactcatgagtgaatattctatacttaaaacttatttagattttgttatgtgtgtaggatgctttataaacccaacataccttat |
662 |
Q |
| |
|
|||||||||||| | |||| ||| ||||||||||||| || | |||||||||||||| ||||||||| |||| |||||||| |||| | ||||||| |
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| T |
37685110 |
tatgttataatgttgtacttatgtttgaatattctata-ttgaggcttatttagattttactatgtgtgttagatgttttataaagccaatagaccttat |
37685012 |
T |
|
| Q |
663 |
actttattgacttagataaattctagcaagactttagc |
700 |
Q |
| |
|
|||||||||||| | |||| |||||||||||||||| |
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| T |
37685011 |
gctttattgacttggttaaaagctagcaagactttagc |
37684974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 858 - 911
Target Start/End: Original strand, 46885638 - 46885689
Alignment:
| Q |
858 |
cgaattgaaatttatcatcatctgggcttctctactattggataagtgcatatt |
911 |
Q |
| |
|
||||||||| ||||||||||||| | ||||||||||||||| |||||||||||| |
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|
| T |
46885638 |
cgaattgaa-tttatcatcatcttg-cttctctactattggttaagtgcatatt |
46885689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 107; Significance: 4e-53; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 199 - 396
Target Start/End: Original strand, 7498415 - 7498613
Alignment:
| Q |
199 |
cagtggtgttggt-tcattgttgctgatcttggtgaggactgctatgtgcgtgtttacccattgtatcatatcccatgaaagtttttgagaagttgcaat |
297 |
Q |
| |
|
|||||||| |||| ||||||||||||||||| || |||||| ||||||| ||||||| || |||| ||||||||| |||| || ||| |||||||||| |
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| T |
7498415 |
cagtggtgctggtatcattgttgctgatctttgtaaggacttttatgtgcatgtttacatatggtattatatcccataaaagattgtgaaaagttgcaat |
7498514 |
T |
|
| Q |
298 |
tgtgtgatttgaacaatttcatttagtatcctataaaaaataaattttcaaatggcatgtgtcatgtagttttggtgtcacaattgataagagcaattg |
396 |
Q |
| |
|
|||||||||| ||||| ||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
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|
| T |
7498515 |
tgtgtgatttcaacaagttcatttagtatcatataaaaattaaattttcaaatggcatgtgtcatgctgttttggtgtcacaattgataagagaaattg |
7498613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 342 - 561
Target Start/End: Complemental strand, 21546256 - 21546009
Alignment:
| Q |
342 |
ttttcaaatggcatgtgtcatgtagttttggtgtcacaattgataagagcaattg-------------gcttttcactatgttgatgaaagttgcatgaa |
428 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| ||||||||||||| ||||| | ||||||||| ||||||||||||| |||||| |
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|
| T |
21546256 |
ttttcaaatggcatgtgtcatgctgttttggtgtctcaattgataagagaaattgttccttcactattgattttcactaggttgatgaaagttacatgaa |
21546157 |
T |
|
| Q |
429 |
ctctaaagtcatgattgccggaggatgatgaccagctctgcaattgtttac----ttgatgttt-----------tagactcaaataagtatgggtatta |
513 |
Q |
| |
|
||||||| ||||||||| ||||||||||||| |||||||||||||||||| |||||| | ||| | |||||| ||||| ||| || |
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|
| T |
21546156 |
ctctaaactcatgattgtcggaggatgatgagtagctctgcaattgtttacctatttgatgcatacatggagaagtagccacaaatatgtatgagtacta |
21546057 |
T |
|
| Q |
514 |
ttttttggttgattataacatgattaaatgaatgtttaagactcttat |
561 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
21546056 |
ttttttggttgattataacatgattaaatgaatattatagactcttat |
21546009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 564 - 700
Target Start/End: Original strand, 7498652 - 7498787
Alignment:
| Q |
564 |
atgttataatgctatactcatgagtgaatattctatacttaaaacttatttagattttgttatgtgtgtaggatgctttataaacccaacataccttata |
663 |
Q |
| |
|
||||||||||| | |||| ||| ||||||||||||| || | |||||||||||||| ||||||||||||||| |||||||| |||| | ||||||| |
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|
| T |
7498652 |
atgttataatgttgtacttatgtttgaatattctata-ttgaggcttatttagattttactatgtgtgtaggatgttttataaagccaatagaccttatg |
7498750 |
T |
|
| Q |
664 |
ctttattgacttagataaattctagcaagactttagc |
700 |
Q |
| |
|
|||||||||||| | |||| |||||||||||||||| |
|
|
| T |
7498751 |
ctttattgacttggttaaaagctagcaagactttagc |
7498787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 576 - 662
Target Start/End: Complemental strand, 21545968 - 21545883
Alignment:
| Q |
576 |
tatactcatgagtgaatattctatacttaaaacttatttagattttgttatgtgtgtaggatgctttataaacccaacataccttat |
662 |
Q |
| |
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|||||||||| ||||||||||||| |||| ||||||||||||||| |||||||||||||| |||||||| |||||| ||||||| |
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|
| T |
21545968 |
tatactcatgtttgaatattctata-ttaaggcttatttagattttgccatgtgtgtaggatgttttataaagccaacaaaccttat |
21545883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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