View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2935R-Insertion-2 (Length: 1001)

Name: NF2935R-Insertion-2
Description: NF2935R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2935R-Insertion-2
NF2935R-Insertion-2
[»] chr1 (11 HSPs)
chr1 (8-407)||(1581721-1582115)
chr1 (438-635)||(1581475-1581671)
chr1 (773-986)||(1581140-1581338)
chr1 (773-813)||(16388885-16388925)
chr1 (772-815)||(10172294-10172337)
chr1 (772-815)||(31845038-31845081)
chr1 (773-815)||(43610542-43610584)
chr1 (774-815)||(1739753-1739794)
chr1 (772-817)||(8028289-8028334)
chr1 (774-815)||(27904441-27904482)
chr1 (774-815)||(35547282-35547323)
[»] chr8 (10 HSPs)
chr8 (772-863)||(5626200-5626289)
chr8 (932-971)||(33378043-33378082)
chr8 (772-815)||(13149862-13149905)
chr8 (772-815)||(33192619-33192662)
chr8 (773-815)||(21307201-21307243)
chr8 (772-817)||(1658321-1658366)
chr8 (772-817)||(6336268-6336313)
chr8 (772-817)||(14031366-14031411)
chr8 (772-817)||(36802289-36802334)
chr8 (772-817)||(37401822-37401867)
[»] chr7 (8 HSPs)
chr7 (773-892)||(2275672-2275787)
chr7 (932-971)||(10199615-10199654)
chr7 (772-815)||(3433527-3433570)
chr7 (818-865)||(12170502-12170547)
chr7 (772-815)||(32883061-32883104)
chr7 (772-817)||(5096120-5096165)
chr7 (772-817)||(24052257-24052302)
chr7 (772-817)||(39753199-39753244)
[»] chr3 (11 HSPs)
chr3 (772-920)||(38809341-38809486)
chr3 (772-815)||(22258699-22258742)
chr3 (773-815)||(28370366-28370408)
chr3 (773-815)||(28378188-28378230)
chr3 (773-815)||(28386006-28386048)
chr3 (773-815)||(49428329-49428371)
chr3 (774-815)||(28391275-28391316)
chr3 (772-817)||(33706242-33706287)
chr3 (772-817)||(37980706-37980751)
chr3 (772-817)||(44176620-44176665)
chr3 (772-817)||(44183303-44183348)
[»] chr2 (8 HSPs)
chr2 (772-815)||(21839524-21839567)
chr2 (773-815)||(28146001-28146043)
chr2 (772-817)||(2383504-2383549)
chr2 (932-969)||(8062770-8062807)
chr2 (932-969)||(14371457-14371494)
chr2 (932-969)||(32114100-32114137)
chr2 (772-817)||(40323982-40324027)
chr2 (932-969)||(42057297-42057334)
[»] chr5 (8 HSPs)
chr5 (932-969)||(32234545-32234582)
chr5 (772-815)||(19650642-19650685)
chr5 (772-815)||(35402911-35402954)
chr5 (772-814)||(17916181-17916223)
chr5 (780-814)||(28766239-28766273)
chr5 (772-817)||(28394266-28394311)
chr5 (772-817)||(31171898-31171943)
chr5 (772-817)||(41875039-41875084)
[»] chr4 (10 HSPs)
chr4 (771-865)||(27866226-27866311)
chr4 (771-815)||(37143424-37143468)
chr4 (773-815)||(26005986-26006028)
chr4 (773-815)||(44470214-44470256)
chr4 (932-969)||(10727431-10727468)
chr4 (932-969)||(10941200-10941237)
chr4 (932-969)||(20964827-20964864)
chr4 (772-817)||(22160769-22160814)
chr4 (772-817)||(23316318-23316363)
chr4 (772-817)||(25921394-25921439)
[»] scaffold0268 (1 HSPs)
scaffold0268 (932-971)||(21278-21317)
[»] scaffold0285 (1 HSPs)
scaffold0285 (772-814)||(16723-16765)
[»] chr6 (3 HSPs)
chr6 (773-815)||(6001474-6001516)
chr6 (772-817)||(13846953-13846998)
chr6 (774-815)||(17259558-17259599)
[»] scaffold0035 (1 HSPs)
scaffold0035 (772-817)||(82238-82283)


Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 8 - 407
Target Start/End: Complemental strand, 1582115 - 1581721
Alignment:
Q  8 acataattcactaatcttgtagcaaattaagcaagtattataatactaaaacaattttaattcagnnnnnnnnnnnnnggaaagaatcatacattagtca 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              ||||||||||||||||||||||    
T  1582115 acataattcactaatcttgtagcaaattaagcaagtattataatactaaaacaattttaattca-----aaaaaaaaaggaaagaatcatacattagtca 1582021  T
Q  108 gatctacaccgttaattgagaaattggatttttcatctccagaatgagaagcttcacttatctgcttcaccgtaaccggaatcaaaccctgagaatcgcg 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1582020 gatctacaccgttaattgagaaattggatttttcatctccagaatgagaagcttcacttatctgcttcaccgtaaccggaatcaaaccctgagaatcgcg 1581921  T
Q  208 actcttgaacaaagaacnnnnnnnnntattagttaatcgataatctttaaagggaaattttcgtttaagcaatatgagaaagatagcacttactttagtc 307  Q
    |||||||||||||||||         |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  1581920 actcttgaacaaagaacaaaaaaaaatattagataatcgataatctttaaagggaaattttcgtttaagcaatatgagaaagatagcgcttactttagtc 1581821  T
Q  308 ggtgccggagaagaatcgttgggttgcgaggacatgaatccgccgccggagaaggcgttggaggaatcgaattgggaattggagaacatcgtgaaaccct 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1581820 ggtgccggagaagaatcgttgggttgcgaggacatgaatccgccgccggagaaggcgttggaggaatcgaattgggaattggagaacatcgtgaaaccct 1581721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 182; E-Value: 7e-98
Query Start/End: Original strand, 438 - 635
Target Start/End: Complemental strand, 1581671 - 1581475
Alignment:
Q  438 tttgtgaaacaatgaagtgagggaattagaaatagtgtgattttgttgctctaattattgcttcccgctagaaatgcttcgatttttcccgccgcttagg 537  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1581671 tttgtgaaacaatgaagtgagggaattagaaatagtgttattttgttgctctaattattgcttcccgctagaaatgcttcgatttttcccgccgcttagg 1581572  T
Q  538 gtttcaactttgaacttgtcacggttttatttatcttttgtgtttcggaaatgaaatgaaatatggctctctccctctcacgtctaatttctgtttac 635  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1581571 gtttcaactttgaacttttcacggttttatttatctttt-tgtttcggaaatgaaatgaaatatggctctctccctctcacgtctaatttctgtttac 1581475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 773 - 986
Target Start/End: Complemental strand, 1581338 - 1581140
Alignment:
Q  773 ctttattatttaaaaagtgtgacaaattaaatgagtatatttaattatttatacttacttttttcatcattcccaattatactcttaaacaacnnnnnnn 872  Q
    |||||||||||||||||||||||||| || |||||||||||||        |||||||||||| ||||||||| |||||||| ||||||||||           
T  1581338 ctttattatttaaaaagtgtgacaaactagatgagtatattta--------tacttacttttt-catcattcc-aattatacccttaaacaacttttt-- 1581251  T
Q  873 ctataataaaaattgttgtttgatgtcatttaaaaaatgaatttagat-atannnnnnngt-atattgtattattgtcggtgtcattgaaataaataatt 970  Q
    ||||||||||| |||||||| ||||||||| ||||||   |||||||| |||       || ||||||||||||||||||||||||||||||||||||||    
T  1581250 ctataataaaa-ttgttgtt-gatgtcattgaaaaaa---atttagattatatttttttgttatattgtattattgtcggtgtcattgaaataaataatt 1581156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 773 - 813
Target Start/End: Original strand, 16388885 - 16388925
Alignment:
Q  773 ctttattatttaaaaagtgtgacaaattaaatgagtatatt 813  Q
    |||||||||||||||||||| ||||| ||||||||||||||    
T  16388885 ctttattatttaaaaagtgtaacaaactaaatgagtatatt 16388925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 772 - 815
Target Start/End: Original strand, 10172294 - 10172337
Alignment:
Q  772 cctttattatttaaaaagtgtgacaaattaaatgagtatattta 815  Q
    ||||||| ||||||||||||| ||||| ||||||||||||||||    
T  10172294 cctttatcatttaaaaagtgtaacaaactaaatgagtatattta 10172337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 772 - 815
Target Start/End: Original strand, 31845038 - 31845081
Alignment:
Q  772 cctttattatttaaaaagtgtgacaaattaaatgagtatattta 815  Q
    ||||||| ||||||||||||| |||||||| |||||||||||||    
T  31845038 cctttatcatttaaaaagtgtaacaaattagatgagtatattta 31845081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 773 - 815
Target Start/End: Original strand, 43610542 - 43610584
Alignment:
Q  773 ctttattatttaaaaagtgtgacaaattaaatgagtatattta 815  Q
    |||||||||||||||||||| |||||||| |||| ||||||||    
T  43610542 ctttattatttaaaaagtgtaacaaattagatgaatatattta 43610584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 774 - 815
Target Start/End: Original strand, 1739753 - 1739794
Alignment:
Q  774 tttattatttaaaaagtgtgacaaattaaatgagtatattta 815  Q
    ||||||||||||||||||| ||||| ||||| ||||||||||    
T  1739753 tttattatttaaaaagtgtaacaaactaaattagtatattta 1739794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 772 - 817
Target Start/End: Complemental strand, 8028334 - 8028289
Alignment:
Q  772 cctttattatttaaaaagtgtgacaaattaaatgagtatatttaat 817  Q
    ||||||| ||||||||||||| ||||| || |||||||||||||||    
T  8028334 cctttatcatttaaaaagtgtaacaaactatatgagtatatttaat 8028289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 774 - 815
Target Start/End: Complemental strand, 27904482 - 27904441
Alignment:
Q  774 tttattatttaaaaagtgtgacaaattaaatgagtatattta 815  Q
    ||||||||||||||||| | ||||| ||||||||||||||||    
T  27904482 tttattatttaaaaagtataacaaactaaatgagtatattta 27904441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 774 - 815
Target Start/End: Complemental strand, 35547323 - 35547282
Alignment:
Q  774 tttattatttaaaaagtgtgacaaattaaatgagtatattta 815  Q
    ||||| ||||||||||||| ||||||||||||||| ||||||    
T  35547323 tttatcatttaaaaagtgtaacaaattaaatgagtgtattta 35547282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 7e-18; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 772 - 863
Target Start/End: Complemental strand, 5626289 - 5626200
Alignment:
Q  772 cctttattatttaaaaagtgtgacaaattaaatgagtatatttaattatttatacttacttttttcatcattcccaattatactcttaaaca 863  Q
    ||||||||||||||||| ||| | ||| ||||| |||||||||||||||||||||||||| ||||||| | |||||||||||| ||||||||    
T  5626289 cctttattatttaaaaattgtaataaactaaataagtatatttaattatttatacttact-ttttcatta-tcccaattatacccttaaaca 5626200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 932 - 971
Target Start/End: Original strand, 33378043 - 33378082
Alignment:
Q  932 tatattgtattattgtcggtgtcattgaaataaataatta 971  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  33378043 tatattgtattaatgtcggtgtcattgaaataaataatta 33378082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 772 - 815
Target Start/End: Original strand, 13149862 - 13149905
Alignment:
Q  772 cctttattatttaaaaagtgtgacaaattaaatgagtatattta 815  Q
    ||||||| ||||||||||||| |||||||| |||||||||||||    
T  13149862 cctttatcatttaaaaagtgtaacaaattagatgagtatattta 13149905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 772 - 815
Target Start/End: Complemental strand, 33192662 - 33192619
Alignment:
Q  772 cctttattatttaaaaagtgtgacaaattaaatgagtatattta 815  Q
    ||||||||||||||||||||| ||||| || |||||||||||||    
T  33192662 cctttattatttaaaaagtgtaacaaactagatgagtatattta 33192619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 773 - 815
Target Start/End: Complemental strand, 21307243 - 21307201
Alignment:
Q  773 ctttattatttaaaaagtgtgacaaattaaatgagtatattta 815  Q
    |||||| ||||||||||||| ||||| ||||||||||||||||    
T  21307243 ctttatcatttaaaaagtgtaacaaactaaatgagtatattta 21307201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 772 - 817
Target Start/End: Original strand, 1658321 - 1658366
Alignment:
Q  772 cctttattatttaaaaagtgtgacaaattaaatgagtatatttaat 817  Q
    ||||||| ||||||||||||| ||||| || |||||||||||||||    
T  1658321 cctttatcatttaaaaagtgtaacaaactatatgagtatatttaat 1658366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 772 - 817
Target Start/End: Original strand, 6336268 - 6336313
Alignment:
Q  772 cctttattatttaaaaagtgtgacaaattaaatgagtatatttaat 817  Q
    ||||||| ||||||||||||| ||||| || |||||||||||||||    
T  6336268 cctttatcatttaaaaagtgtaacaaactatatgagtatatttaat 6336313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 772 - 817
Target Start/End: Complemental strand, 14031411 - 14031366
Alignment:
Q  772 cctttattatttaaaaagtgtgacaaattaaatgagtatatttaat 817  Q
    ||||||| ||||||||||||| ||||| || |||||||||||||||    
T  14031411 cctttatcatttaaaaagtgtaacaaactatatgagtatatttaat 14031366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 772 - 817
Target Start/End: Original strand, 36802289 - 36802334
Alignment:
Q  772 cctttattatttaaaaagtgtgacaaattaaatgagtatatttaat 817  Q
    ||||||| ||||||||||||| ||||| || |||||||||||||||    
T  36802289 cctttatcatttaaaaagtgtaacaaactatatgagtatatttaat 36802334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 772 - 817
Target Start/End: Complemental strand, 37401867 - 37401822
Alignment:
Q  772 cctttattatttaaaaagtgtgacaaattaaatgagtatatttaat 817  Q
    ||||||| ||||||||||||| ||||| || |||||||||||||||    
T  37401867 cctttatcatttaaaaagtgtaacaaactatatgagtatatttaat 37401822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 773 - 892
Target Start/End: Complemental strand, 2275787 - 2275672
Alignment:
Q  773 ctttattatttaaaaagtgtgacaaattaaatgagtatatttaattatttatacttacttttttcatcattcccaattatactcttaaacaacnnnnnnn 872  Q
    |||||| |||||||| |||| ||||| ||||| |||||||||||||||||||||||| |||||| || | || ||||||||| ||||||||||           
T  2275787 ctttatcatttaaaatgtgtaacaaactaaataagtatatttaattatttatacttaatttttt-atta-tctcaattatacccttaaacaac--ttttt 2275692  T
Q  873 ctataataaaaattgttgtt 892  Q
    ||||||||||||||||||||    
T  2275691 ctataataaaaattgttgtt 2275672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 932 - 971
Target Start/End: Complemental strand, 10199654 - 10199615
Alignment:
Q  932 tatattgtattattgtcggtgtcattgaaataaataatta 971  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  10199654 tatattgtattattgtcggtgtcgttgaaataaataatta 10199615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 772 - 815
Target Start/End: Original strand, 3433527 - 3433570
Alignment:
Q  772 cctttattatttaaaaagtgtgacaaattaaatgagtatattta 815  Q
    ||||||| ||||||||||||| ||||||||||||| ||||||||    
T  3433527 cctttatcatttaaaaagtgtaacaaattaaatgattatattta 3433570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 818 - 865
Target Start/End: Original strand, 12170502 - 12170547
Alignment:
Q  818 tatttatacttacttttttcatcattcccaattatactcttaaacaac 865  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||||    
T  12170502 tatttatacttacttttt-catcattcc-aattatactcttaaacaac 12170547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 772 - 815
Target Start/End: Original strand, 32883061 - 32883104
Alignment:
Q  772 cctttattatttaaaaagtgtgacaaattaaatgagtatattta 815  Q
    ||||||| ||||||||||||| |||||||| |||||||||||||    
T  32883061 cctttatcatttaaaaagtgtaacaaattagatgagtatattta 32883104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 772 - 817
Target Start/End: Complemental strand, 5096165 - 5096120
Alignment:
Q  772 cctttattatttaaaaagtgtgacaaattaaatgagtatatttaat 817  Q
    ||||||| ||||||||||||| ||||| || |||||||||||||||    
T  5096165 cctttatcatttaaaaagtgtaacaaactatatgagtatatttaat 5096120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 772 - 817
Target Start/End: Complemental strand, 24052302 - 24052257
Alignment:
Q  772 cctttattatttaaaaagtgtgacaaattaaatgagtatatttaat 817  Q
    ||||||| ||||||||||||| ||||| || |||||||||||||||    
T  24052302 cctttatcatttaaaaagtgtaacaaactatatgagtatatttaat 24052257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 772 - 817
Target Start/End: Complemental strand, 39753244 - 39753199
Alignment:
Q  772 cctttattatttaaaaagtgtgacaaattaaatgagtatatttaat 817  Q
    ||||||| ||||||||||||| ||||| || |||||||||||||||    
T  39753244 cctttatcatttaaaaagtgtaacaaactatatgagtatatttaat 39753199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 772 - 920
Target Start/End: Complemental strand, 38809486 - 38809341
Alignment:
Q  772 cctttattatttaaaaagtgtgacaaattaaatgagtatatttaattatttatacttacttttttcatcattcccaattatactcttaaacaacnnnnnn 871  Q
    ||||||| ||||||||||||| ||||| || |||||||||||||  | |||||||||||| ||||||| | | |||||||||| ||||||||||          
T  38809486 cctttatcatttaaaaagtgtaacaaactatatgagtatatttatatttttatacttact-ttttcattact-ccaattatacccttaaacaac--tttt 38809391  T
Q  872 nctataataaaaattgttgtttgatgtcatttaaaaaat--gaatttagat 920  Q
     | |||||||| ||||||||||| |||||||||||||||  ||||||||||    
T  38809390 tcaataataaagattgttgtttg-tgtcatttaaaaaataagaatttagat 38809341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 772 - 815
Target Start/End: Complemental strand, 22258742 - 22258699
Alignment:
Q  772 cctttattatttaaaaagtgtgacaaattaaatgagtatattta 815  Q
    ||||||| ||||||||||||| |||||||| |||||||||||||    
T  22258742 cctttatcatttaaaaagtgtaacaaattagatgagtatattta 22258699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 773 - 815
Target Start/End: Original strand, 28370366 - 28370408
Alignment:
Q  773 ctttattatttaaaaagtgtgacaaattaaatgagtatattta 815  Q
    |||||| ||||||||||||| ||||| ||||||||||||||||    
T  28370366 ctttatcatttaaaaagtgtaacaaactaaatgagtatattta 28370408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 773 - 815
Target Start/End: Original strand, 28378188 - 28378230
Alignment:
Q  773 ctttattatttaaaaagtgtgacaaattaaatgagtatattta 815  Q
    |||||| ||||||||||||| ||||| ||||||||||||||||    
T  28378188 ctttatcatttaaaaagtgtaacaaactaaatgagtatattta 28378230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 773 - 815
Target Start/End: Original strand, 28386006 - 28386048
Alignment:
Q  773 ctttattatttaaaaagtgtgacaaattaaatgagtatattta 815  Q
    |||||| ||||||||||||| ||||| ||||||||||||||||    
T  28386006 ctttatcatttaaaaagtgtaacaaactaaatgagtatattta 28386048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 773 - 815
Target Start/End: Complemental strand, 49428371 - 49428329
Alignment:
Q  773 ctttattatttaaaaagtgtgacaaattaaatgagtatattta 815  Q
    |||||| ||||||||||| | ||||||||||||||||||||||    
T  49428371 ctttatcatttaaaaagtataacaaattaaatgagtatattta 49428329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 774 - 815
Target Start/End: Original strand, 28391275 - 28391316
Alignment:
Q  774 tttattatttaaaaagtgtgacaaattaaatgagtatattta 815  Q
    ||||| ||||||||||||| ||||| ||||||||||||||||    
T  28391275 tttatcatttaaaaagtgtaacaaactaaatgagtatattta 28391316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 772 - 817
Target Start/End: Complemental strand, 33706287 - 33706242
Alignment:
Q  772 cctttattatttaaaaagtgtgacaaattaaatgagtatatttaat 817  Q
    ||||||| ||||||||| ||| |||||||| |||||||||||||||    
T  33706287 cctttatcatttaaaaaatgtaacaaattatatgagtatatttaat 33706242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 772 - 817
Target Start/End: Original strand, 37980706 - 37980751
Alignment:
Q  772 cctttattatttaaaaagtgtgacaaattaaatgagtatatttaat 817  Q
    ||||||| ||||||||||||| ||||| || |||||||||||||||    
T  37980706 cctttatcatttaaaaagtgtaacaaactatatgagtatatttaat 37980751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 772 - 817
Target Start/End: Complemental strand, 44176665 - 44176620
Alignment:
Q  772 cctttattatttaaaaagtgtgacaaattaaatgagtatatttaat 817  Q
    ||||||| ||||||||||||| ||||| || |||||||||||||||    
T  44176665 cctttatcatttaaaaagtgtaacaaactatatgagtatatttaat 44176620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 772 - 817
Target Start/End: Complemental strand, 44183348 - 44183303
Alignment:
Q  772 cctttattatttaaaaagtgtgacaaattaaatgagtatatttaat 817  Q
    ||||||| ||||||||||||| ||||| || |||||||||||||||    
T  44183348 cctttatcatttaaaaagtgtaacaaactatatgagtatatttaat 44183303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000009; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 772 - 815
Target Start/End: Original strand, 21839524 - 21839567
Alignment:
Q  772 cctttattatttaaaaagtgtgacaaattaaatgagtatattta 815  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||    
T  21839524 cctttattatttaaaaagtgtaacaaactaaatgagtatattta 21839567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 773 - 815
Target Start/End: Original strand, 28146001 - 28146043
Alignment:
Q  773 ctttattatttaaaaagtgtgacaaattaaatgagtatattta 815  Q
    |||||| ||||||||||||| |||||||| |||||||||||||    
T  28146001 ctttatcatttaaaaagtgtaacaaattagatgagtatattta 28146043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 772 - 817
Target Start/End: Original strand, 2383504 - 2383549
Alignment:
Q  772 cctttattatttaaaaagtgtgacaaattaaatgagtatatttaat 817  Q
    ||||||| ||||||||||||| ||||| || |||||||||||||||    
T  2383504 cctttatcatttaaaaagtgtaacaaactatatgagtatatttaat 2383549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 932 - 969
Target Start/End: Complemental strand, 8062807 - 8062770
Alignment:
Q  932 tatattgtattattgtcggtgtcattgaaataaataat 969  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  8062807 tatattgtattattgtcggtgtcgttgaaatagataat 8062770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 932 - 969
Target Start/End: Original strand, 14371457 - 14371494
Alignment:
Q  932 tatattgtattattgtcggtgtcattgaaataaataat 969  Q
    |||||||||||||||| |||||| ||||||||||||||    
T  14371457 tatattgtattattgttggtgtcgttgaaataaataat 14371494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 932 - 969
Target Start/End: Complemental strand, 32114137 - 32114100
Alignment:
Q  932 tatattgtattattgtcggtgtcattgaaataaataat 969  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  32114137 tatattgtattattgtcggtgtcgttgaaatagataat 32114100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 772 - 817
Target Start/End: Complemental strand, 40324027 - 40323982
Alignment:
Q  772 cctttattatttaaaaagtgtgacaaattaaatgagtatatttaat 817  Q
    ||||||| ||||||||||||| ||||| || |||||||||||||||    
T  40324027 cctttatcatttaaaaagtgtaacaaactatatgagtatatttaat 40323982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 932 - 969
Target Start/End: Complemental strand, 42057334 - 42057297
Alignment:
Q  932 tatattgtattattgtcggtgtcattgaaataaataat 969  Q
    |||||||||||||||| ||||||||||||||| |||||    
T  42057334 tatattgtattattgttggtgtcattgaaatagataat 42057297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 932 - 969
Target Start/End: Complemental strand, 32234582 - 32234545
Alignment:
Q  932 tatattgtattattgtcggtgtcattgaaataaataat 969  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  32234582 tatattgtattattgtcggtgtcgttgaaataaataat 32234545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 772 - 815
Target Start/End: Original strand, 19650642 - 19650685
Alignment:
Q  772 cctttattatttaaaaagtgtgacaaattaaatgagtatattta 815  Q
    ||||||||||||||||||||| ||||| || |||||||||||||    
T  19650642 cctttattatttaaaaagtgtaacaaactagatgagtatattta 19650685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 772 - 815
Target Start/End: Complemental strand, 35402954 - 35402911
Alignment:
Q  772 cctttattatttaaaaagtgtgacaaattaaatgagtatattta 815  Q
    ||||||| ||||||||||||| ||||| ||||||||||||||||    
T  35402954 cctttatcatttaaaaagtgtaacaaactaaatgagtatattta 35402911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 772 - 814
Target Start/End: Complemental strand, 17916223 - 17916181
Alignment:
Q  772 cctttattatttaaaaagtgtgacaaattaaatgagtatattt 814  Q
    ||||||| ||||||||||||| ||||| |||||||||||||||    
T  17916223 cctttatcatttaaaaagtgtaacaaactaaatgagtatattt 17916181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 780 - 814
Target Start/End: Original strand, 28766239 - 28766273
Alignment:
Q  780 atttaaaaagtgtgacaaattaaatgagtatattt 814  Q
    |||||||||||||||||||||| ||||||||||||    
T  28766239 atttaaaaagtgtgacaaattatatgagtatattt 28766273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 772 - 817
Target Start/End: Complemental strand, 28394311 - 28394266
Alignment:
Q  772 cctttattatttaaaaagtgtgacaaattaaatgagtatatttaat 817  Q
    ||||||| ||||||||||||| ||||| || |||||||||||||||    
T  28394311 cctttatcatttaaaaagtgtaacaaactatatgagtatatttaat 28394266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 772 - 817
Target Start/End: Complemental strand, 31171943 - 31171898
Alignment:
Q  772 cctttattatttaaaaagtgtgacaaattaaatgagtatatttaat 817  Q
    ||||||| ||||||||||||| ||||| || |||||||||||||||    
T  31171943 cctttatcatttaaaaagtgtaacaaactatatgagtatatttaat 31171898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 772 - 817
Target Start/End: Complemental strand, 41875084 - 41875039
Alignment:
Q  772 cctttattatttaaaaagtgtgacaaattaaatgagtatatttaat 817  Q
    ||||||| ||||||||||||| ||||| || |||||||||||||||    
T  41875084 cctttatcatttaaaaagtgtaacaaactatatgagtatatttaat 41875039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 771 - 865
Target Start/End: Complemental strand, 27866311 - 27866226
Alignment:
Q  771 acctttattatttaaaaagtgtgacaaattaaatgagtatatttaattatttatacttacttttttcatcattcccaattatactcttaaacaac 865  Q
    |||||||| ||||||||||||| |||||||| |||||||||        |||||||||||||||||||| | || |||||||||| |||||||||    
T  27866311 acctttatcatttaaaaagtgtaacaaattagatgagtata--------tttatacttacttttttcatta-tctcaattatactattaaacaac 27866226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 771 - 815
Target Start/End: Complemental strand, 37143468 - 37143424
Alignment:
Q  771 acctttattatttaaaaagtgtgacaaattaaatgagtatattta 815  Q
    |||||||| ||||||||||||| ||||| ||||||||||||||||    
T  37143468 acctttatcatttaaaaagtgtaacaaactaaatgagtatattta 37143424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 773 - 815
Target Start/End: Original strand, 26005986 - 26006028
Alignment:
Q  773 ctttattatttaaaaagtgtgacaaattaaatgagtatattta 815  Q
    |||||||||||||||||||| ||||| || |||||||||||||    
T  26005986 ctttattatttaaaaagtgtaacaaactatatgagtatattta 26006028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 773 - 815
Target Start/End: Original strand, 44470214 - 44470256
Alignment:
Q  773 ctttattatttaaaaagtgtgacaaattaaatgagtatattta 815  Q
    |||||| ||||||||||||| ||||| ||||||||||||||||    
T  44470214 ctttatcatttaaaaagtgtaacaaactaaatgagtatattta 44470256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 932 - 969
Target Start/End: Original strand, 10727431 - 10727468
Alignment:
Q  932 tatattgtattattgtcggtgtcattgaaataaataat 969  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  10727431 tatattgtattattgtcggtgtcgttgaaatagataat 10727468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 932 - 969
Target Start/End: Original strand, 10941200 - 10941237
Alignment:
Q  932 tatattgtattattgtcggtgtcattgaaataaataat 969  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  10941200 tatattgtattattgtcggtgtcgttgaaatagataat 10941237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 932 - 969
Target Start/End: Original strand, 20964827 - 20964864
Alignment:
Q  932 tatattgtattattgtcggtgtcattgaaataaataat 969  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  20964827 tatattgtattattgtcggtgtcgttgaaatagataat 20964864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 772 - 817
Target Start/End: Original strand, 22160769 - 22160814
Alignment:
Q  772 cctttattatttaaaaagtgtgacaaattaaatgagtatatttaat 817  Q
    ||||||| ||||||||||||| ||||| || |||||||||||||||    
T  22160769 cctttatcatttaaaaagtgtaacaaactatatgagtatatttaat 22160814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 772 - 817
Target Start/End: Original strand, 23316318 - 23316363
Alignment:
Q  772 cctttattatttaaaaagtgtgacaaattaaatgagtatatttaat 817  Q
    ||||||| ||||||||||||| ||||| || |||||||||||||||    
T  23316318 cctttatcatttaaaaagtgtaacaaactatatgagtatatttaat 23316363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 772 - 817
Target Start/End: Original strand, 25921394 - 25921439
Alignment:
Q  772 cctttattatttaaaaagtgtgacaaattaaatgagtatatttaat 817  Q
    ||||||| ||||||||||||| ||||| || |||||||||||||||    
T  25921394 cctttatcatttaaaaagtgtaacaaactatatgagtatatttaat 25921439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0268 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0268
Description:

Target: scaffold0268; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 932 - 971
Target Start/End: Original strand, 21278 - 21317
Alignment:
Q  932 tatattgtattattgtcggtgtcattgaaataaataatta 971  Q
    ||||||||||||||||||||||| || |||||||||||||    
T  21278 tatattgtattattgtcggtgtcgttaaaataaataatta 21317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0285 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0285
Description:

Target: scaffold0285; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 772 - 814
Target Start/End: Complemental strand, 16765 - 16723
Alignment:
Q  772 cctttattatttaaaaagtgtgacaaattaaatgagtatattt 814  Q
    ||||||| ||||||||||||| ||||| |||||||||||||||    
T  16765 cctttatcatttaaaaagtgtaacaaactaaatgagtatattt 16723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 773 - 815
Target Start/End: Complemental strand, 6001516 - 6001474
Alignment:
Q  773 ctttattatttaaaaagtgtgacaaattaaatgagtatattta 815  Q
    |||||| ||||||||||||| ||||| ||||||||||||||||    
T  6001516 ctttatcatttaaaaagtgtaacaaactaaatgagtatattta 6001474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 772 - 817
Target Start/End: Original strand, 13846953 - 13846998
Alignment:
Q  772 cctttattatttaaaaagtgtgacaaattaaatgagtatatttaat 817  Q
    ||||||| ||||||||||||| ||||| || |||||||||||||||    
T  13846953 cctttatcatttaaaaagtgtaacaaactatatgagtatatttaat 13846998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 774 - 815
Target Start/End: Complemental strand, 17259599 - 17259558
Alignment:
Q  774 tttattatttaaaaagtgtgacaaattaaatgagtatattta 815  Q
    ||||| ||||||||||||| ||||| ||||||||||||||||    
T  17259599 tttatcatttaaaaagtgtaacaaactaaatgagtatattta 17259558  T

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Target: scaffold0035 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 772 - 817
Target Start/End: Original strand, 82238 - 82283
Alignment:
Q  772 cctttattatttaaaaagtgtgacaaattaaatgagtatatttaat 817  Q
    ||||||| ||||||||||||| ||||| || |||||||||||||||    
T  82238 cctttatcatttaaaaagtgtaacaaactatatgagtatatttaat 82283  T

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