View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2935R-Insertion-3 (Length: 1000)
Name: NF2935R-Insertion-3
Description: NF2935R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2935R-Insertion-3 |
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Alignment Details
Target: chr5 (Bit Score: 442; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 9 - 523
Target Start/End: Original strand, 37925592 - 37926102
Alignment:
| Q |
9 |
gtatcatggtgggggtgattgtgcattaaacatggaagcagacttgtgcagggtacaattgtaacaattgaaatgaaaagagcagcataaattgaaactt |
108 |
Q |
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| T |
37925592 |
gtatcatggtgggggtgattgtgcattaaacatggaagcagacttgtgcagggtacaattgtaacaatcaaaatgaaaagagcagcataaattgaaactt |
37925691 |
T |
|
| Q |
109 |
tttt-cttttcttcctatgtatcatatgctagattttaccaaatcgatagccgataaacacatcatcaactacaccct-acaagcaaggtcgagactcta |
206 |
Q |
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| T |
37925692 |
tttttcttttcttcctatgtatcatatgctagattttaccaaatcgatagcc------cacatcatcaactacacccttacaagcaaggtcgagactcta |
37925785 |
T |
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| Q |
207 |
gattctagaatatgtgcaccacccagactaggatagtacatccttcaagaactacaagtaagacctgcagtgaattagtaaatcaatcatagcaccaaat |
306 |
Q |
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| T |
37925786 |
gattctagaatatgtgcaccacccagactaggatagtacatccttcaagaactacaagtaagacctacagtgaattagtaaatcaatcatagcaccaaat |
37925885 |
T |
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| Q |
307 |
gattttattaaatacattgatcatatgtacaaagtagtgattcaatactatgaggagatgacatgatggcaatgacctcgaacgagaaaaaaggtcatgc |
406 |
Q |
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| T |
37925886 |
gattttattaaatacattgatcatatgtacaaagtagtgattcaatactatgaagagatgacatgatggcaatgacctctaacaagaaaaaagatcatgc |
37925985 |
T |
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| Q |
407 |
atcggaggatggttaaacaatcacgaattactaacgtagtctaatatatgatgaattactaacgtatatgtgatagacgtttgagtctcttgatcaattg |
506 |
Q |
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| T |
37925986 |
atcggaggatggttaaacaatcacgaattactaacgtagtctaatatatgatgaattactaatatatatgtgatagacgtttgagtctcttgatcaattg |
37926085 |
T |
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| Q |
507 |
gttagagattcaatctc |
523 |
Q |
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| T |
37926086 |
gttagagattcaatctc |
37926102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 610 - 915
Target Start/End: Original strand, 37926217 - 37926521
Alignment:
| Q |
610 |
ataacctccttgatctttaaatacttgttgcatagtccataaagcttgaaggtattaaattttctcatagattcaannnnnnngtagttgtttggccatt |
709 |
Q |
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| T |
37926217 |
ataacctccttgatctttaaatacttgttgcatagtccgtaaagcttgaaggtattaaattttctcataagttcaatttttttgtagttgtttgaccatt |
37926316 |
T |
|
| Q |
710 |
cacttttttgtagatgctttcttcatttatgcgagtgtatccaatattannnnnnnatttgtatttgtgttcaagcaagacttgctcgctcataaatcag |
809 |
Q |
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| T |
37926317 |
cacttttttgtagatgctttcttcatttatgcgagtgtgtccaatattatttttt-atttgtatttgtgttcaagcaagacatgctcgctcataaatcag |
37926415 |
T |
|
| Q |
810 |
atcatatactcattggacaaagcaattcttcgcatggtcacaaatctaaatgtataatgcttaaacatatataaaagagacatttttaaaaacaataata |
909 |
Q |
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| T |
37926416 |
atcatatactcattggacaaatcaattcttcacatggtcacaaatctaaatatataatgcttagacatatataaaagagacatttttaaaaacaataata |
37926515 |
T |
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| Q |
910 |
aatgat |
915 |
Q |
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|||||| |
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| T |
37926516 |
aatgat |
37926521 |
T |
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