View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2935R-Insertion-4 (Length: 990)
Name: NF2935R-Insertion-4
Description: NF2935R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2935R-Insertion-4 |
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Alignment Details
Target: chr3 (Bit Score: 667; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 667; E-Value: 0
Query Start/End: Original strand, 9 - 737
Target Start/End: Original strand, 44547713 - 44548440
Alignment:
| Q |
9 |
ttgtgtttgcaattgcattgctataactttaataagtttatttgtctacgcttatgtgaagttactgttttcactttgaatatggatcggttcaaaccac |
108 |
Q |
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| T |
44547713 |
ttgtgtttgcaattgcattgctataactttaataagtttatttgtctatgcttatgtgaagttactgttttcactttgaatatggatcagttcaaaccac |
44547812 |
T |
|
| Q |
109 |
tttgaaaatgtgatgcaacaattttcccaattgggacgaatactggctttgttattttgaaattttgcaactgagatatgtgcttcatgttgtagatctt |
208 |
Q |
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| T |
44547813 |
tttgaaaatgtgatgcaacaattttcccaattgggacggatactggctttgttattttgaaattttgcaactgagatatgtgcttcatgttgtagatctt |
44547912 |
T |
|
| Q |
209 |
ctaaaggaattagaagcagctcgtgatgatttccccaaagttttgcgtctcctgcgtggatttttcttttggttgaaagtaagtatctaatgattcttcc |
308 |
Q |
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| T |
44547913 |
ctaaaggaattagaagcagctcgtgatgatttccccaaagttttgcgtctcctgcgtggatttttcttttggttgaaagtaagtatctaatgattcttcc |
44548012 |
T |
|
| Q |
309 |
gcatctcactagacgttttatttgttagtccttcatgcatatttttcnnnnnnnnnnngctcttcatgcaccgctcaattgataatgatgcctatatatt |
408 |
Q |
| |
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| T |
44548013 |
gcatctcactagacgttttatttgttagtccttcatgcatatttttcaaaaaaaaaa-gctcttcatgcacctctcaattgataatgatgcctatatatt |
44548111 |
T |
|
| Q |
409 |
cacctgaaagtttttaacttctaacacatttcaagatgtttgtgttgagaaacatggcaagagctagggacagaaacagaattgagagaaagtcagaaac |
508 |
Q |
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| T |
44548112 |
cacctgaaagtttttaacttctaacacatttcaagatgtttgtgttgagaaacatggctagagctagggacagaaacagaattgagagaaagtcagaaac |
44548211 |
T |
|
| Q |
509 |
tttaatttactgaatgcatgctagaattgagagtatctaggcatacggttaagtcaacccacatatatgtggtaatagtttggcatgtcactgtctacag |
608 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44548212 |
tttaatttactgaatacatgctagaattgagagtatctaggcatacggttaagtcaacccacatatatgtggtaatagtttggcatgtcactgtctacag |
44548311 |
T |
|
| Q |
609 |
catagtttgtaattaaatttcgaaactctgttgtaactgtctggaattaaacaactgatcaagaatgccctaaattgagttctacaattggtggaatata |
708 |
Q |
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| T |
44548312 |
catagtttgtaattaaatttcgaaactctgttgtaactgtctggaattaaacaactgatcaagaatgccctaaattgagttctacaattggtggaatata |
44548411 |
T |
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| Q |
709 |
tgagaattgaaaatctatttgagtctaat |
737 |
Q |
| |
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| T |
44548412 |
tgagaattgaaaatctatttgagtctaat |
44548440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 182; E-Value: 7e-98
Query Start/End: Original strand, 764 - 964
Target Start/End: Original strand, 44548495 - 44548695
Alignment:
| Q |
764 |
tgcaaaaatattgtttggaagacgagtgcaaaaagaatccattatctttatcatggcttacgttacatatagacctttttattggagcaaatttctccac |
863 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
44548495 |
tgcaaaaatattgtttggaagacgagtgcaaaaagaatccattatctttatcatggcttacgttacatatagacctttttattggagcaaatttcccca- |
44548593 |
T |
|
| Q |
864 |
cccctatctttaatttctacatattcatcggtgtttccagaatcagaagtgtcacaaagttcatgtttttactggatgtgtatatcggag-tgatattgg |
962 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
44548594 |
cccctatctttaatttctacatattcatcggtgtttccagaatcagaagtgtcacaaagttcatgtttttactggatgtgtatatcggagttgatattgg |
44548693 |
T |
|
| Q |
963 |
gg |
964 |
Q |
| |
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|| |
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|
| T |
44548694 |
gg |
44548695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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