View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2935R-Insertion-6 (Length: 587)
Name: NF2935R-Insertion-6
Description: NF2935R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2935R-Insertion-6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 307 - 579
Target Start/End: Original strand, 4313604 - 4313877
Alignment:
| Q |
307 |
ctagaatctcataaatcaaagagttcatagaaatgatgatagagactttagagtggtcactttt-ttgataaggcaaaaaatcaacacaatgcttcatga |
405 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
4313604 |
ctagaatctcataaatcaaagagtttatagaaatgatgatagagactttagagtggtcactttttttgataaggcaaaaaatcaacacaatgcttcatga |
4313703 |
T |
|
| Q |
406 |
ttaccaattgaccaaattgtgtatcaagcaaccatcttttgctgctaatttattgtatatatgaacagttttacaaaatcacattgaagcaatctaggtt |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4313704 |
ttaccaattgaccaaattgtgtatcaagcaaccatcttttgctgctaatttattgtatatatgaacagttatacaaaatcacattgaagcaatctaggtt |
4313803 |
T |
|
| Q |
506 |
ccatatattaatttatcatggcccgttgctttttaccaaaattatgatccgtcataatttgaataaattgaagg |
579 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4313804 |
ccatatattaatttatcatggcccattgctttttaccaaaattatgatccgtcataatttgaataaattgaagg |
4313877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 9 - 248
Target Start/End: Original strand, 4313306 - 4313545
Alignment:
| Q |
9 |
tatctggctaatggctgaccataaaaatttactattaatttcataatttcactgaaatccatgcaagttaattcttcactacttcccaccaatttgggtc |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4313306 |
tatctggctaatggctgaccataaaaatttactattaatttcataatttcactgaaatccatgcaagttaattcttcactacttcccaccaatttgggtc |
4313405 |
T |
|
| Q |
109 |
cttggccacgatgcacaaaacaaagaatttcattgggcctttgagattgttgctatatctaactttggtcgtaaaaatgggtataatgttcacatttgta |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4313406 |
cttggccacgatgcacaaaacaaagaatttcattgggcctttgagattgttgctatatgtaactttggtcgtaaaaatgggtataatgttcacatttgta |
4313505 |
T |
|
| Q |
209 |
tgcactttgtctgttaaagctcaagtaactatatcgagtg |
248 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4313506 |
tgcactttgtctgttaaagctcaagtaactatatcaagtg |
4313545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University