View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2935R-Insertion-7 (Length: 279)
Name: NF2935R-Insertion-7
Description: NF2935R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2935R-Insertion-7 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 8 - 262
Target Start/End: Original strand, 6941544 - 6941798
Alignment:
| Q |
8 |
agcataaagtttctctaatgaggtggatcatgtcattccatcatagcaaaatgtgttttttatgagcgcacatcttgctaacttaaatctttgtaccata |
107 |
Q |
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| T |
6941544 |
agcataaagtttctctaatgaggtggatcatgtcattccatcatagcaaaatgtgttttttatgagcgcacatcttgctaatttaaatctttgtaccata |
6941643 |
T |
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| Q |
108 |
tgttttatagaagagtagcgctatatcccacaaagaggtttcaacgaaaaccacaagatagtagtgctttgtagcaatttctttc-tcctttttatcaaa |
206 |
Q |
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| T |
6941644 |
tgttttacagaagagtagcactatatcccacaaaggggtttcaacgaaaaccacaaaatagtagtgctttgtagcaatttctttcttcttttttatcaaa |
6941743 |
T |
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| Q |
207 |
ataaattaaaatatggtgtttgacggaaaatatatgtgggtgttgtgttattcttt |
262 |
Q |
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| T |
6941744 |
ataaatt-aaatataatgtttgacggaaaatatgtgtgggtggtgtgttattcttt |
6941798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 113
Target Start/End: Original strand, 18887649 - 18887755
Alignment:
| Q |
10 |
cataaagtttctctaatgaggtggatcatgtcattccatcatagcaaaatgtg---ttttttatgagcgcacatcttgctaacttaaatctttgtaccat |
106 |
Q |
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| T |
18887649 |
cataaaatttccctgatgaggtggatcatgttattccatcgcaacaaaatgtgtttttttttatgtgtgtacatcttgctaatttaaatcttggtcccat |
18887748 |
T |
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| Q |
107 |
atgtttt |
113 |
Q |
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| T |
18887749 |
atgtttt |
18887755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 43
Target Start/End: Complemental strand, 12806081 - 12806048
Alignment:
| Q |
10 |
cataaagtttctctaatgaggtggatcatgtcat |
43 |
Q |
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| T |
12806081 |
cataaagtttctctaatgaggtggatcatgtcat |
12806048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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