View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2935R-Insertion-8 (Length: 220)
Name: NF2935R-Insertion-8
Description: NF2935R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2935R-Insertion-8 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 7 - 220
Target Start/End: Original strand, 39109292 - 39109505
Alignment:
| Q |
7 |
caccctgaatcctttaagaaactcgtggaaatggacctgccttgtaatgaaagggtggaggaaaaactgtgttggttgcggtctcaaatcataggtaatg |
106 |
Q |
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| T |
39109292 |
caccctgaatcctttaagaaacttgtggaaatggacctgccttgtaatgaaagtgtggaggaaaaactctgttggttgcggtctcaaatcataggtaatt |
39109391 |
T |
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| Q |
107 |
atgcaaagtttgattctccgtttggaagacgaaaacttgtctatgctgatcacactgcttctggtcgtagtcttcgttacaatgaagatttcatcatcaa |
206 |
Q |
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| T |
39109392 |
atgcaaagtttgattctccgtttggaagacgaaaacttgtctatgctgatcacactgcttctggtcgtagtcttcgttacaatgaagatttcatcatcaa |
39109491 |
T |
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| Q |
207 |
tcaccttcttcctt |
220 |
Q |
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| T |
39109492 |
tcaccttcttcctt |
39109505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 215
Target Start/End: Original strand, 39100401 - 39100574
Alignment:
| Q |
42 |
cctgccttgtaatgaaagggtggaggaaaaactgtgttggttgcggtctcaaatcataggtaatgatgcaaagtttgattctccgtttggaagacgaaaa |
141 |
Q |
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|||||| ||||||||| ||||| |||||||| || |||||| | || |||||||| |||||||||| | | || | ||||| ||||| | ||||| |
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| T |
39100401 |
cctgccatgtaatgaatcagtggaagaaaaactatgctggttgagatcacaaatcattggtaatgatgtagaattcaactctccttttggtactagaaaa |
39100500 |
T |
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| Q |
142 |
cttgtctatgctgatcacactgcttctggtcgtagtcttcgttacaatgaagatttcatcatcaatcaccttct |
215 |
Q |
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| T |
39100501 |
cttgtctattctgatcacacagcttcaggtcgcagtcttcatttcattgaaaacttcatcaccaaacatcttct |
39100574 |
T |
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