View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2935_high_1 (Length: 533)
Name: NF2935_high_1
Description: NF2935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2935_high_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 499; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 1 - 515
Target Start/End: Complemental strand, 49042571 - 49042057
Alignment:
| Q |
1 |
aaagaaagactaacggcggagatggatttcaaagattcaacctccgccgttatcaaaatccggcgacgtttaccggattttctacaaacggtgaaactca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49042571 |
aaagaaagactaacggcggagatggatttcaaagattcaacctccgccgttatcaaaatccggcgacgtttaccggattttctacaaacggtgaaactca |
49042472 |
T |
|
| Q |
101 |
agtacgtaaagttaggttatggctattcatgcaatgccacaaccattctcattttcacattcgtcgtccctctcttactcttcctcaccgttcagttcca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49042471 |
agtacgtaaagttaggttatggctattcatgcaatgccacaaccattctcattttcacattcgtcgtccctctcttactcttcctcaccgttcagttcca |
49042372 |
T |
|
| Q |
201 |
actcaccgatctaaaactccaccgtctctcacaactcttactcgaacacaccgtccaacttgacaccgatacagccatcggttcaatctttctactcttc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49042371 |
actcaccgatctaaaactccaccgtctctcacaactcttactcgaacacaccgtccaacttgacaccgatacagccatcggttcaatctttctactcttc |
49042272 |
T |
|
| Q |
301 |
ctctttggtctgtactacgcgaaacgatccccaccaatttacctggtggactttgcgtgctacaaacctgagaatgagcggaaaattgcagttgattctt |
400 |
Q |
| |
|
|| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
49042271 |
ctttttggtctgtactacgctaaacgatccccaccaatttacctggtggactttgcttgctacaaacctgagaatgagcggaaaattgcagttgaatctt |
49042172 |
T |
|
| Q |
401 |
tcgttaaaatgttagaagatagtggcgaattcggagaagaaacacttcaatttcaacgccgcattttgtcaagagcaggtcttggtgatgaaacttcctt |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49042171 |
tcgttaaaatgttagaagatagtggcgaattcggagaagaaacacttcaatttcaacgccgcattttgtcaagagcaggtcttggtgatgaaacttcctt |
49042072 |
T |
|
| Q |
501 |
gccaaacggaataat |
515 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
49042071 |
gccaaacggaataat |
49042057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University