View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2935_low_2 (Length: 265)
Name: NF2935_low_2
Description: NF2935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2935_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 18127354 - 18127593
Alignment:
| Q |
11 |
cacagaaacattgtcaaagtctgccgtgattccaaacatgagaacaacatttatgcattccttcacgtttcttgtgctcacttagaaatcgaatattaag |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18127354 |
cacagaaacattgtcaaagtctgccgtgattccaaacatgagaacaacatttatgcattccttcacgtttcttgtgctcacttagaaatcgaatattaag |
18127453 |
T |
|
| Q |
111 |
taccactttcattttacacaataaaatataagtgcgaaactttcctattcaagacaatttatttacttttaggccaatgcaaattaggtctggctcaaaa |
210 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18127454 |
taccactttcattttacacaatgaaatataagtgcgaaactttcctattcaagacaatttatttacttttaggccaatgcaaattaggtctggctcaaaa |
18127553 |
T |
|
| Q |
211 |
tcttaaccgttaaagtaaaacaacctgtgacagaaattat |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18127554 |
tcttaaccgttaaagtaaaacaacctgtgacagaaattat |
18127593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University