View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2935_low_3 (Length: 254)

Name: NF2935_low_3
Description: NF2935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2935_low_3
NF2935_low_3
[»] chr5 (6 HSPs)
chr5 (21-202)||(24877949-24878129)
chr5 (81-236)||(25011850-25012006)
chr5 (157-232)||(19050159-19050235)
chr5 (39-225)||(23280864-23281049)
chr5 (109-194)||(23374463-23374548)
chr5 (32-87)||(23374378-23374433)
[»] chr8 (1 HSPs)
chr8 (70-236)||(16226072-16226238)
[»] chr4 (4 HSPs)
chr4 (37-232)||(17396723-17396919)
chr4 (72-179)||(24278-24384)
chr4 (99-194)||(25983564-25983659)
chr4 (59-188)||(25267615-25267744)
[»] scaffold0485 (1 HSPs)
scaffold0485 (35-182)||(4600-4738)
[»] chr2 (5 HSPs)
chr2 (38-191)||(43938806-43938953)
chr2 (37-88)||(33408025-33408076)
chr2 (59-88)||(15855126-15855155)
chr2 (158-194)||(15855018-15855054)
chr2 (48-88)||(19402257-19402297)
[»] chr7 (2 HSPs)
chr7 (37-197)||(21926217-21926379)
chr7 (40-88)||(33290861-33290909)
[»] scaffold0016 (2 HSPs)
scaffold0016 (109-194)||(17917-18002)
scaffold0016 (32-87)||(18032-18087)
[»] chr6 (2 HSPs)
chr6 (166-232)||(12875665-12875732)
chr6 (97-154)||(22542355-22542412)
[»] chr3 (1 HSPs)
chr3 (99-192)||(2277478-2277571)
[»] chr1 (1 HSPs)
chr1 (87-196)||(33480467-33480576)


Alignment Details
Target: chr5 (Bit Score: 118; Significance: 3e-60; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 21 - 202
Target Start/End: Original strand, 24877949 - 24878129
Alignment:
Q  21 gaatgatcaagatatgtgtgagcatgaaacttggtttgtgtgaaatatgtgaaaatagacgaactttgtgaaatatgaaaaatagatggactttgagaaa 120  Q
    ||||||| | ||||||||||||||||||| ||||||| ||||||||||||| || ||||||||||||||||||||||||| ||||| | |||||||||||    
T  24877949 gaatgataaggatatgtgtgagcatgaaagttggtttatgtgaaatatgtgcaa-tagacgaactttgtgaaatatgaaatatagacgaactttgagaaa 24878047  T
Q  121 tgatgaatcatgctatgttaatttgtaaatgattacatgataatgataaggtgatgaataatggttgaattggttatgatgt 202  Q
    |||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||    
T  24878048 tgatgaatcatgatatgttaccttgtaaatgattacatgataatgataaggtgatgaataatgattggattgattatgatgt 24878129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 81 - 236
Target Start/End: Complemental strand, 25012006 - 25011850
Alignment:
Q  81 gaactttgtgaaatatgaaaaatagatggactttgagaaatgatgaatcatgctatgttaatttgtaaatgattacatgataatgataaggtgatgaata 180  Q
    |||||||||||||||||  |||||||   |||||||||||| ||||||||||||||||||| |||||| ||||||  |||||||||||||||  ||||||    
T  25012006 gaactttgtgaaatatgtcaaatagacaaactttgagaaataatgaatcatgctatgttaacttgtaattgattatgtgataatgataaggttctgaata 25011907  T
Q  181 atggttgaattggtta-tgatgtgtacatgaaatgttgattaactaggtgtaaatga 236  Q
    ||| ||||||| || | |||| |||||| || || ||||||||||||||||||||||    
T  25011906 atgattgaattagtgattgatatgtacaagatatattgattaactaggtgtaaatga 25011850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 157 - 232
Target Start/End: Complemental strand, 19050235 - 19050159
Alignment:
Q  157 atgataatgataaggtgatgaataatggttgaattggtta-tgatgtgtacatgaaatgttgattaactaggtgtaa 232  Q
    ||||||||||||||| |||||||||||||||||||||||| |||| |||  |||||||||||||||| || ||||||    
T  19050235 atgataatgataaggcgatgaataatggttgaattggttattgatatgtgaatgaaatgttgattaattaagtgtaa 19050159  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 39 - 225
Target Start/End: Original strand, 23280864 - 23281049
Alignment:
Q  39 tgagcatgaaacttggtttgtgtgaaatatgtgaaaatagacgaactttgtgaaatatgaaaaatagatggactttgagaaatgatgaatcatgctatgt 138  Q
    |||||||||||||||||||  ||||| ||| || ||||| | | |||||||||| | || |||||| | | |||| | ||| |||||||| |||  ||||    
T  23280864 tgagcatgaaacttggtttaagtgaa-tat-tggaaataaatggactttgtgaattgtggaaaatatacgaacttagtgaactgatgaattatgacatgt 23280961  T
Q  139 taatttgtaaatgattacatgataatgataaggtgatgaataatggttgaattggtt-atgatgtgtacatgaaatgttgattaacta 225  Q
    ||| |||| | |  ||| ||||| ||||||||||||||||||||| ||||||||||| |||||  ||  ||||||| |||||||||||    
T  23280962 taagttgttattagttatatgatgatgataaggtgatgaataatgattgaattggttaatgataagtgaatgaaatattgattaacta 23281049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 109 - 194
Target Start/End: Original strand, 23374463 - 23374548
Alignment:
Q  109 gactttgagaaatgatgaatcatgctatgttaatttgtaaatgattacatgataatgataaggtgatgaataatggttgaattggt 194  Q
    |||||||| |||||||||||||||||||| ||| || | ||||  ||   |||||||||||| ||||||||||| |||||||||||    
T  23374463 gactttgataaatgatgaatcatgctatgataacttttgaatgcctatgagataatgataagttgatgaataatagttgaattggt 23374548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 87
Target Start/End: Original strand, 23374378 - 23374433
Alignment:
Q  32 atatgtgtgagcatgaaacttggtttgtgtgaaatatgtgaaaatagacgaacttt 87  Q
    |||||| |||||||||||||| ||||  | ||||||||||| ||||||||||||||    
T  23374378 atatgtatgagcatgaaacttagttttggcgaaatatgtgagaatagacgaacttt 23374433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 70 - 236
Target Start/End: Complemental strand, 16226238 - 16226072
Alignment:
Q  70 tgaaaatagacgaactttgtgaaatatgaaaaatagatggactttgagaaatgatgaatcatgctatgttaatttgtaaatgattacatgataatgataa 169  Q
    |||||||||| ||||||||||||||||||||| |||| |||| |||| |||| ||||||||||||||||||| | |||||||| || ||||||||||||     
T  16226238 tgaaaatagatgaactttgtgaaatatgaaaa-tagacggacattgataaataatgaatcatgctatgttaactcgtaaatgactatatgataatgatat 16226140  T
Q  170 ggtgatgaataatggttgaattggtta-tgatgtgtacatgaaatgttgattaactaggtgtaaatga 236  Q
    | ||||||||||| |||||  |||| | |||| | ||| ||| |  ||||||||||| ||||||||||    
T  16226139 gttgatgaataatagttgagatggtgattgatatatacctgatacattgattaactacgtgtaaatga 16226072  T

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Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 37 - 232
Target Start/End: Complemental strand, 17396919 - 17396723
Alignment:
Q  37 tgtgagcatgaaacttggtttgtgtgaaatatgtgaaaatagacgaactttg-tgaa-atatgaaaaatagatggactttgagaaatgatgaatcatgct 134  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||||||| | |||| || |||||| |||| ||  |||| |||||||||||| |||      
T  17396919 tgtgagcatgaaacttggtttttgtgaaatatgtgaaaagagacgaacttgggtgaagatgtgaaaa-tagacggt-tttgtgaaatgatgaattatggc 17396822  T
Q  135 atgttaatttgtaaatgattacatgataatgataaggtgatgaataatggttgaattggtt-atgatgtgtacatgaaatgttgattaactaggtgtaa 232  Q
    |||| |  |||||| |  ||| |||||||||||||||||||||||||| || ||||||||| ||||| |||  ||||||| ||||||||||| ||||||    
T  17396821 atgtaaccttgtaatttgttatatgataatgataaggtgatgaataatagtcgaattggttaatgatatgtgaatgaaatattgattaactaagtgtaa 17396723  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 72 - 179
Target Start/End: Complemental strand, 24384 - 24278
Alignment:
Q  72 aaaatagacgaactttgtgaaatatgaaaaatagatggactttgagaaatgatgaatcatgctatgttaatttgtaaatgattacatgataatgataagg 171  Q
    ||||||||||||||||||||||| |||||| |||| ||||||||  |||||| || | ||||||| |||| |||||||||| ||  || || ||||||||    
T  24384 aaaatagacgaactttgtgaaatgtgaaaa-tagacggactttggaaaatgaggatttatgctattttaacttgtaaatgactatgtgctattgataagg 24286  T
Q  172 tgatgaat 179  Q
    ||||||||    
T  24285 tgatgaat 24278  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 99 - 194
Target Start/End: Original strand, 25983564 - 25983659
Alignment:
Q  99 aaaatagatggactttgagaaatgatgaatcatgctatgttaatttgtaaatgattacatgataatgataaggtgatgaataatggttgaattggt 194  Q
    ||||||||  |||||||| |||||||||||||||||||||||| |||| ||| | ||  |||| |||||||  ||||||||||| |||||||||||    
T  25983564 aaaatagacagactttgataaatgatgaatcatgctatgttaacttgtgaattactatgtgattatgataaactgatgaataatagttgaattggt 25983659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 59 - 188
Target Start/End: Complemental strand, 25267744 - 25267615
Alignment:
Q  59 tgtgaaatatgtgaaaatagacgaactt-tgtgaaatatgaaaaatagatggactttgagaaatgatgaatcatgctatgttaatttgtaaatgattaca 157  Q
    |||||||| ||| |||||| |||||||| ||||||  ||||||| |||| |||||| | ||| |||||||| ||| | ||||   ||| || || ||| |    
T  25267744 tgtgaaatgtgtaaaaatatacgaacttatgtgaatgatgaaaa-tagacggacttagtgaattgatgaattatgatttgttggcttgcaattggttata 25267646  T
Q  158 tgataatgataaggtgatgaataatggttga 188  Q
    ||||||||||| |||||||||||||||||||    
T  25267645 tgataatgatacggtgatgaataatggttga 25267615  T

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Target: scaffold0485 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0485
Description:

Target: scaffold0485; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 35 - 182
Target Start/End: Complemental strand, 4738 - 4600
Alignment:
Q  35 tgtgtgagcatgaaacttggtttgtgtgaaatatgtgaaaatagacgaactttgtgaaatatgaaaaatagatggactttgagaaatgatgaatcatgct 134  Q
    ||||||| |||| |||||| |||  |||||||||||||||||||| ||||||||          |||||||| | ||||||| ||||||||||||||||     
T  4738 tgtgtgaacatgtaacttgtttttggtgaaatatgtgaaaatagatgaactttgg---------aaaatagacgaactttgataaatgatgaatcatgcc 4648  T
Q  135 atgttaatttgtaaatgattacatgataatgataaggtgatgaataat 182  Q
    ||||||| |||| |||||  | |||||||||||||| |||||||||||    
T  4647 atgttaacttgtgaatgaccatatgataatgataagttgatgaataat 4600  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 38 - 191
Target Start/End: Complemental strand, 43938953 - 43938806
Alignment:
Q  38 gtgagcatgaaacttggtttgtgtgaaatatgtgaaaatagacgaactttgtgaaatatgaaaaatagatggactttgag-aaatgatgaatcatgctat 136  Q
    ||||||||| |||||| |||  |||||||||||||||||| ||||||||||   ||    |||| |||| |||||||||  ||| ||||||||||| |||    
T  43938953 gtgagcatgtaacttgattttggtgaaatatgtgaaaataaacgaactttg---aa----aaaattagacggactttgaataaacgatgaatcatgttat 43938861  T
Q  137 gttaatttgtaaatgattacatgataatgataaggtgatgaataatggttgaatt 191  Q
    |||||||||| ||||  ||  ||||||||||||| ||||||||||| ||||||||    
T  43938860 gttaatttgtgaatggctatgtgataatgataagttgatgaataatagttgaatt 43938806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 88
Target Start/End: Complemental strand, 33408076 - 33408025
Alignment:
Q  37 tgtgagcatgaaacttggtttgtgtgaaatatgtgaaaatagacgaactttg 88  Q
    |||||||||| |||||| |||  |||||||| ||||||||||||||||||||    
T  33408076 tgtgagcatgtaacttgattttggtgaaataggtgaaaatagacgaactttg 33408025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 88
Target Start/End: Complemental strand, 15855155 - 15855126
Alignment:
Q  59 tgtgaaatatgtgaaaatagacgaactttg 88  Q
    ||||||||||||||||||||||||||||||    
T  15855155 tgtgaaatatgtgaaaatagacgaactttg 15855126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 194
Target Start/End: Complemental strand, 15855054 - 15855018
Alignment:
Q  158 tgataatgataaggtgatgaataatggttgaattggt 194  Q
    ||||||||||||| ||||||||||| |||||||||||    
T  15855054 tgataatgataagttgatgaataatagttgaattggt 15855018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 88
Target Start/End: Original strand, 19402257 - 19402297
Alignment:
Q  48 aacttggtttgtgtgaaatatgtgaaaatagacgaactttg 88  Q
    ||||||||||  |||||||||||||||| ||||||||||||    
T  19402257 aacttggttttggtgaaatatgtgaaaaaagacgaactttg 19402297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 37 - 197
Target Start/End: Complemental strand, 21926379 - 21926217
Alignment:
Q  37 tgtgagcatgaaacttggtttgtgtgaaatatgtgaaaatagacgaactttg-tgaaatatga-aaaatagatggactttgagaaatgatgaatcatgct 134  Q
    ||||| |||||||||| | || ||||||| |||||||||||||| ||||| | ||||| |||  |||||||| || ||||| |||||||||||| |||      
T  21926379 tgtgaacatgaaacttaggttatgtgaaaaatgtgaaaatagacaaacttaggtgaaa-atgtgaaaatagacgggctttgtgaaatgatgaattatggc 21926281  T
Q  135 atgttaatttgtaaa-tgattacatgataatgataaggtgatgaataatggttgaattggttat 197  Q
    ||||||  ||||||  |  ||| | ||||||||||||||||||||||| |||||||||||||||    
T  21926280 atgttagcttgtaatctttttataggataatgataaggtgatgaataagggttgaattggttat 21926217  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 33290861 - 33290909
Alignment:
Q  40 gagcatgaaacttggtttgtgtgaaatatgtgaaaatagacgaactttg 88  Q
    ||||||| |||||||||| ||  ||| ||||||||||||||||||||||    
T  33290861 gagcatgtaacttggtttttggtaaaaatgtgaaaatagacgaactttg 33290909  T

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Target: scaffold0016 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 109 - 194
Target Start/End: Complemental strand, 18002 - 17917
Alignment:
Q  109 gactttgagaaatgatgaatcatgctatgttaatttgtaaatgattacatgataatgataaggtgatgaataatggttgaattggt 194  Q
    |||||||| |||||||||||||||||||| ||| || | ||||  ||   |||||||||||| ||||||||||| |||||||||||    
T  18002 gactttgataaatgatgaatcatgctatgataacttttgaatgcctatgagataatgataagttgatgaataatagttgaattggt 17917  T

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Target: scaffold0016; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 87
Target Start/End: Complemental strand, 18087 - 18032
Alignment:
Q  32 atatgtgtgagcatgaaacttggtttgtgtgaaatatgtgaaaatagacgaacttt 87  Q
    |||||| |||||||||||||| ||||  | ||||||||||| ||||||||||||||    
T  18087 atatgtatgagcatgaaacttagttttggcgaaatatgtgagaatagacgaacttt 18032  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 166 - 232
Target Start/End: Original strand, 12875665 - 12875732
Alignment:
Q  166 ataaggtgatgaataatggttgaattggtta-tgatgtgtacatgaaatgttgattaactaggtgtaa 232  Q
    ||||||||||||||||||||||||||||| | |||| |||  ||||||| |||||||| || ||||||    
T  12875665 ataaggtgatgaataatggttgaattggtcattgatatgtgaatgaaatattgattaattaagtgtaa 12875732  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 97 - 154
Target Start/End: Complemental strand, 22542412 - 22542355
Alignment:
Q  97 gaaaaatagatggactttgagaaatgatgaatcatgctatgttaatttgtaaatgatt 154  Q
    |||||||||| ||||||||| ||||||||| | ||| || ||||| ||||||||||||    
T  22542412 gaaaaatagacggactttgacaaatgatgatttatgataagttaacttgtaaatgatt 22542355  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 99 - 192
Target Start/End: Original strand, 2277478 - 2277571
Alignment:
Q  99 aaaatagatggactttgagaaatgatgaatcatgctatgttaatttgtaaatgattacatgataatgataaggtgatgaataatggttgaattg 192  Q
    |||||||||||||||||  || | |||| | ||| |||| ||| ||||||||||||| ||| || || |||  |||||||||||| ||||||||    
T  2277478 aaaatagatggactttgtaaattaatgagttatgttatgataacttgtaaatgattatatgctagtgttaacatgatgaataatgattgaattg 2277571  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 87 - 196
Target Start/End: Complemental strand, 33480576 - 33480467
Alignment:
Q  87 tgtgaaatatgaaaaatagatggactttgagaaatgatgaatcatgctatgttaatttgtaaatgattacatgataatgataaggtgatgaataatggtt 186  Q
    |||||||| ||  ||||||| |||||||| ||||||| |||| ||   ||||||  |||||| |  ||| | |||| |||||| |||||||||||||||     
T  33480576 tgtgaaatgtgtgaaatagacggactttgtgaaatgaagaattatagcatgttagcttgtaattcgttatacgatattgataaagtgatgaataatggtc 33480477  T
Q  187 gaattggtta 196  Q
    ||||||||||    
T  33480476 gaattggtta 33480467  T

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