View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2936_high_2 (Length: 618)
Name: NF2936_high_2
Description: NF2936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2936_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 559; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 18 - 592
Target Start/End: Complemental strand, 4486481 - 4485907
Alignment:
| Q |
18 |
cttatgggtcctatatgtcatgtctggtgctacttctactatttgtgtgctaatacaaaccatcaagtggctaaaatccaatcagccacatgaagacttg |
117 |
Q |
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| T |
4486481 |
cttatgggtcctatatgtcatgtctggtgctacttctactatttgtgtgctaatacaaaccatcaagtggctaaaatccaatcagccacatgaagacttg |
4486382 |
T |
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| Q |
118 |
ccaccagaagaagataatggcacgccaagtgatgaaagggtgtggaaaaaggcgattacatttgcaaagcagatttatagcaaaaagcacaataattcaa |
217 |
Q |
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| T |
4486381 |
ccaccagaagaaggtaatggcacgccaagtgatgaaagggtgtggaaaaaggcgattacatttgcaaagcagatttatagcaaaaagcacaataattcaa |
4486282 |
T |
|
| Q |
218 |
gcaaggaacaagatgtaatcgactgttcttcgagatcaggtcatgcgagcatcgctgatacccctgagcattcacaggaactcgcttctataccaaaaga |
317 |
Q |
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| T |
4486281 |
gcaaggaacaagatgtaatcgactgttcttcgagatcaggtcatgcgagcatcgctgatactcctgagcattcagaggaactcgcttctataccaaaaga |
4486182 |
T |
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| Q |
318 |
cgtacatattacaccatataacataggaactttagaaccacatacacttcaaaataattgtcatatcagacactgtacaaaccaactttaattagttact |
417 |
Q |
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| T |
4486181 |
cgtacatattacaccatataacataggaactttagaaccacatacacttcaaaataattgtcatatcagacactgtacaaaccaactttaattagttact |
4486082 |
T |
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| Q |
418 |
gtggagattcaattgtgtaagtattgaaaaataatagattcattcatatcattcaataaaattgttctttctctttgtttgtacctatcaattttccgtt |
517 |
Q |
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| T |
4486081 |
gtggagattcaattgtgtaagtattgaaaaataatagattcattcatatcattcaataaaattgttctttctctttgtttgtacctatcaattttccgtt |
4485982 |
T |
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| Q |
518 |
tcttctctttgcacattggcatttggaaaataatctgcattatattttataattcatcacaagtctctcatttcc |
592 |
Q |
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| T |
4485981 |
tcttctctttgcacattggcatttggaaaataatctgcattatattctataattcatcacaagtctctcatttcc |
4485907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 49 - 388
Target Start/End: Complemental strand, 4480328 - 4479992
Alignment:
| Q |
49 |
acttctactatttgtgtgctaatacaaaccatcaagtggctaaaatccaatcagccacatgaagacttgccaccagaagaagataatggcacgccaagtg |
148 |
Q |
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| T |
4480328 |
acttctaccatttgtgtgctaatatcaaccatcacgtgcctaaaatccaatcagccagatgaagacttgccaccagaaggc---aatgtcacacaaactg |
4480232 |
T |
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| Q |
149 |
atgaaagggtgtggaaaaaggcgattacatttgcaaagcagatttatagcaaaaagcacaataattcaagcaaggaacaagatgtaatcgactgttcttc |
248 |
Q |
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| T |
4480231 |
atgaaagtgtgtggaaaaaggttattacatttgcaaagcagatttatagcaaaatgcgtaataattcaagcaaggcacgggatgtaactgactgttcttc |
4480132 |
T |
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| Q |
249 |
gagatcaggtcatgcgagcatcgctgatacccctgagcattcacaggaactcgcttctataccaaaagacgtacatattacaccatataacataggaact |
348 |
Q |
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| T |
4480131 |
gagatcaggtcatgcgagtaaagccgatacccccgagcaatcgcaggaacccgcttctccgccaaaagaagtacatactacaacacatgacataggaaca |
4480032 |
T |
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| Q |
349 |
ttagaaccacatacacttcaaaataattgtcatatcagac |
388 |
Q |
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| T |
4480031 |
taagaactacgtgcacttcaaaacaattggcatatcagac |
4479992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 420 - 527
Target Start/End: Complemental strand, 4479905 - 4479797
Alignment:
| Q |
420 |
ggagattcaattgtgt-aagtattgaaaaataatagattcattcatatcattcaataaaattgttctttctctttgtttgtacctatcaattttccgttt |
518 |
Q |
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||||||||||||| || ||||| ||||||||| ||||||| ||||||| ||||||||||| ||||||||| |||||||||||||||||||| ||| || |
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| T |
4479905 |
ggagattcaattgggttaagtactgaaaaatagtagattcgttcatatgattcaataaaaatgttctttccttttgtttgtacctatcaattatccaatt |
4479806 |
T |
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| Q |
519 |
cttctcttt |
527 |
Q |
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|| |||||| |
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| T |
4479805 |
ctcctcttt |
4479797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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