View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2936_low_1 (Length: 633)
Name: NF2936_low_1
Description: NF2936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2936_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 15 - 336
Target Start/End: Original strand, 41375833 - 41376155
Alignment:
| Q |
15 |
atcatgaaaacatattggatttttaagctttttgacatgaagaggtggcaaacatttgtaagagaaacggattgatttggatcttacaacttattgttga |
114 |
Q |
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| T |
41375833 |
atcatgaaaacatattggatttttaagctttttgacatgaagaggtggcaaacatttgtaagagaaacggattgatttggatcttacaacttattgttga |
41375932 |
T |
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| Q |
115 |
tatttcaaagttctaacgagnnnnnnnntaataagaagggagcggtaataacagccacaagaggagcttaatgcatgaaggagatattgattgaattgaa |
214 |
Q |
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| T |
41375933 |
tatttcaaagttctaacgagaaaaaaaataataagaagggaggggtaataacagccacaagaggagcttaatgcatgaaggagatattgattgaattgaa |
41376032 |
T |
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| Q |
215 |
atcaatggaaaaggacataacttaatggatatatatgacaaaatcaatttactggatttagaaaccctg-nnnnnnnttaattgacaagaccgcatggaa |
313 |
Q |
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| T |
41376033 |
atcaatggaaaaggacataacttaatggatatatatgacaaaatcaatttacaggatttagaaaccctgaaaaaaaattaattgacaagaccgcatggaa |
41376132 |
T |
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| Q |
314 |
gaagaaaggaagactagatttaa |
336 |
Q |
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| T |
41376133 |
gaagaaaggaagactagatttaa |
41376155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 375 - 616
Target Start/End: Original strand, 41377943 - 41378176
Alignment:
| Q |
375 |
ctaaatctaaaccgttaattaaatccagcggctcatgttaacttgactgcgtgattgcgtgatttgcttgacagcagtgaatcacggtcccaaaaacact |
474 |
Q |
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| T |
41377943 |
ctaaatctaaaccgttaattaaatccagcggctcatgttaacttgactgcg--------tgatttgcttgacagcagtgaatcacggtcccaaaaacact |
41378034 |
T |
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| Q |
475 |
acaaggccaaaacaaaaaggagggcaaccagcagttgaggtcgacatcgttctggacaacagtgaaaataattcacttagaacatcttaatttaattata |
574 |
Q |
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| T |
41378035 |
acaaggccaaaacaaaaaggagggcaaccagcagttgaggtcgacttcgttctggacaacagtgaaaataattcaattagaacatcttaatttaattata |
41378134 |
T |
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| Q |
575 |
agaaatagataaagtaggggcaagaggtgtagagttgacaag |
616 |
Q |
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| T |
41378135 |
agaaatagataaagtaggggcaagaggtgtagagttgacaag |
41378176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 405 - 462
Target Start/End: Complemental strand, 41375491 - 41375434
Alignment:
| Q |
405 |
gctcatgttaacttgactgcgtgattgcgtgatttgcttgacagcagtgaatcacggt |
462 |
Q |
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| T |
41375491 |
gctcatgttaacttgactacgtgactgcttgatttgtttgacagcaatgaatcacggt |
41375434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 418
Target Start/End: Complemental strand, 41375661 - 41375618
Alignment:
| Q |
375 |
ctaaatctaaaccgttaattaaatccagcggctcatgttaactt |
418 |
Q |
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| T |
41375661 |
ctaaatctaaactgttaattaaatccgacggctcatgttaactt |
41375618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 537 - 594
Target Start/End: Original strand, 20021991 - 20022048
Alignment:
| Q |
537 |
tgaaaataattcacttagaacatcttaatttaattataagaaatagataaagtagggg |
594 |
Q |
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| T |
20021991 |
tgaaaacaattcatttagaacatcttcatttaattataaggcatagataaagtggggg |
20022048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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