View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2936_low_3 (Length: 494)
Name: NF2936_low_3
Description: NF2936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2936_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 128 - 484
Target Start/End: Original strand, 17991705 - 17992061
Alignment:
| Q |
128 |
gtccacccttgtccttgattatatttaattggacgctctgcatgcatgttgttgtattgatttattgtgctgccatttcaatattgcat-agtttaggta |
226 |
Q |
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| T |
17991705 |
gtccacccttgtccttgattatatttaattggatgctctgcatgcatgttgttgtattgatttattgtgctgccaattcaatattgctttagtttaggta |
17991804 |
T |
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| Q |
227 |
gtcctaggttttgagtcgnnnnnnnn-------ggcagtcttaggtttgatttaattagcaccttcctttactagaaatttattaatgttttagtttcta |
319 |
Q |
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| T |
17991805 |
gtcctaggttttgagtcgaaaaaaaaaaaaaaaggcagtcttaggtttgatttaattagcaccttcctttactagaaatttattaatgttttagtttcta |
17991904 |
T |
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| Q |
320 |
gcttcatatgttgttgtcttgtctaatcaatttaaggttttgaagttcttgtcaattatgcatcaatgatcaatttattgttatttctagtttgtaaccc |
419 |
Q |
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| T |
17991905 |
gcttcatatgttgttgtcttgtctaatcaatttaaggttttcaagttcttgtcaattatgcatcgatgatcaatttattgttatttctagtttgtaaccc |
17992004 |
T |
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| Q |
420 |
aactctttgtagtgcaatattctatcatcttatcgtgtaattttgtagctatctttcaagttcat |
484 |
Q |
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| T |
17992005 |
aactc-ttgtagtgca-------atcatcttatcgtgtaattttgtagctatctttcaagttcat |
17992061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 439 - 484
Target Start/End: Original strand, 12450316 - 12450361
Alignment:
| Q |
439 |
ttctatcatcttatcgtgtaattttgtagctatctttcaagttcat |
484 |
Q |
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| T |
12450316 |
ttctatgatcttatcatgtaattttgtagctacctttcaagttcat |
12450361 |
T |
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