View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2936_low_5 (Length: 243)

Name: NF2936_low_5
Description: NF2936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2936_low_5
NF2936_low_5
[»] chr8 (10 HSPs)
chr8 (1-235)||(42455836-42456069)
chr8 (19-95)||(32927834-32927910)
chr8 (19-88)||(26668494-26668563)
chr8 (22-86)||(11791810-11791874)
chr8 (23-85)||(5997360-5997422)
chr8 (31-100)||(35525366-35525435)
chr8 (2-102)||(13384714-13384814)
chr8 (19-67)||(18355925-18355973)
chr8 (19-95)||(35495202-35495278)
chr8 (22-90)||(37684350-37684418)
[»] chr4 (11 HSPs)
chr4 (1-95)||(35064987-35065081)
chr4 (19-85)||(25318989-25319055)
chr4 (22-80)||(26617709-26617767)
chr4 (23-85)||(33560648-33560710)
chr4 (22-95)||(2635108-2635181)
chr4 (1-90)||(46344904-46344992)
chr4 (32-102)||(32818430-32818500)
chr4 (20-78)||(22683806-22683864)
chr4 (19-65)||(42152978-42153024)
chr4 (28-85)||(8330066-8330123)
chr4 (62-90)||(39733709-39733737)
[»] chr5 (11 HSPs)
chr5 (19-95)||(34250418-34250494)
chr5 (21-85)||(10898666-10898730)
chr5 (23-90)||(5468719-5468786)
chr5 (22-85)||(42439695-42439758)
chr5 (60-102)||(9818717-9818759)
chr5 (22-95)||(11648027-11648100)
chr5 (1-102)||(18851142-18851243)
chr5 (1-66)||(39097188-39097253)
chr5 (22-98)||(4848205-4848281)
chr5 (20-88)||(6806313-6806381)
chr5 (58-90)||(13171833-13171865)
[»] chr1 (10 HSPs)
chr1 (19-103)||(47321965-47322049)
chr1 (19-102)||(28083948-28084031)
chr1 (24-82)||(646127-646185)
chr1 (19-90)||(24587851-24587922)
chr1 (33-84)||(31362279-31362330)
chr1 (1-64)||(47892486-47892549)
chr1 (19-82)||(49824831-49824894)
chr1 (22-95)||(6021749-6021822)
chr1 (19-47)||(15478116-15478144)
chr1 (18-70)||(37131875-37131927)
[»] chr7 (8 HSPs)
chr7 (22-95)||(5489913-5489986)
chr7 (22-95)||(45004965-45005038)
chr7 (22-73)||(12306922-12306973)
chr7 (19-102)||(28725112-28725195)
chr7 (21-66)||(17111819-17111864)
chr7 (19-70)||(12306676-12306727)
chr7 (18-88)||(41788259-41788327)
chr7 (22-95)||(41386882-41386955)
[»] chr6 (18 HSPs)
chr6 (23-88)||(35098532-35098597)
chr6 (19-95)||(5724697-5724773)
chr6 (22-90)||(25195436-25195504)
chr6 (22-85)||(6653754-6653817)
chr6 (19-102)||(26280547-26280630)
chr6 (19-102)||(765446-765529)
chr6 (19-102)||(4910850-4910933)
chr6 (20-95)||(6654157-6654232)
chr6 (33-95)||(2008569-2008631)
chr6 (28-85)||(2234291-2234348)
chr6 (19-90)||(1485218-1485290)
chr6 (2-61)||(2002566-2002625)
chr6 (2-95)||(2008405-2008498)
chr6 (1-90)||(7952781-7952870)
chr6 (25-66)||(18690620-18690661)
chr6 (19-47)||(31305965-31305993)
chr6 (19-95)||(34620828-34620904)
chr6 (19-95)||(34748265-34748341)
[»] scaffold0168 (1 HSPs)
scaffold0168 (19-95)||(31768-31844)
[»] chr3 (11 HSPs)
chr3 (19-90)||(1441453-1441524)
chr3 (17-102)||(41115422-41115507)
chr3 (2-90)||(25359646-25359733)
chr3 (22-82)||(54596763-54596823)
chr3 (20-95)||(7717388-7717462)
chr3 (19-82)||(7717453-7717516)
chr3 (19-89)||(32523414-32523484)
chr3 (19-71)||(3845203-3845255)
chr3 (22-97)||(33548188-33548264)
chr3 (22-90)||(35264483-35264551)
chr3 (22-102)||(40736597-40736677)
[»] chr2 (14 HSPs)
chr2 (27-95)||(680344-680412)
chr2 (34-102)||(31453340-31453408)
chr2 (19-95)||(42740919-42740995)
chr2 (22-73)||(7630361-7630412)
chr2 (1-64)||(15928532-15928595)
chr2 (19-85)||(36987189-36987255)
chr2 (19-95)||(2002762-2002838)
chr2 (22-101)||(33502909-33502989)
chr2 (19-87)||(37420272-37420340)
chr2 (2-66)||(43501068-43501132)
chr2 (19-90)||(10644546-10644616)
chr2 (31-90)||(32777924-32777983)
chr2 (1-85)||(42774910-42774996)
chr2 (22-87)||(1976940-1977005)


Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 42455836 - 42456069
Alignment:
Q  1 aaattgattatggagcaatagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgctataatt 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42455836 aaattgattatggagcagtagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgctataatt 42455935  T
Q  101 tgccccatagattttgacatatgtcatagcttttctctttttgtgtgaacttcttaataaataaatcatcatgccccacatataaaaattattggatccg 200  Q
    |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  42455936 tgccccatagattttgacatgt-tcatagcttttctctttttgtgtgaacttcttaataaataaatcatcatgcctcgcatataaaaattattggatccg 42456034  T
Q  201 tcactgtacacttgtgaacatatctgtgctcctcc 235  Q
    |||||||||||||||||||||||||||||||||||    
T  42456035 tcactgtacacttgtgaacatatctgtgctcctcc 42456069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 32927834 - 32927910
Alignment:
Q  19 tagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgcta 95  Q
    ||||||||| | |||||||||||||||||||  ||||| ||||||| |||||| ||| |||||||||||||| ||||    
T  32927834 tagaattgactctgacatgtttggttgctttccagtagaattgattttgcctcaatagttgattctacttgaagcta 32927910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 26668494 - 26668563
Alignment:
Q  19 tagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctactt 88  Q
    ||||||||||| | ||||||||| ||  | | |||||| |||||||||||||||||||||||||||||||    
T  26668494 tagaattgattctaacatgtttgattcttgtcgagtagaattgattctgcctccataattgattctactt 26668563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 11791874 - 11791810
Alignment:
Q  22 aattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctac 86  Q
    ||||||||||| ||||||||||||| ||||| ||  ||||| | ||||||||||| |||||||||    
T  11791874 aattgattttggcatgtttggttgcctttgaatataattgaatttgcctccataactgattctac 11791810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 85
Target Start/End: Complemental strand, 5997422 - 5997360
Alignment:
Q  23 attgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattcta 85  Q
    |||||||||||||||||||| || |||||||||  ||||||| |||||| | || ||||||||    
T  5997422 attgattttgacatgtttggatgtttttgagtaaaattgattttgcctctaaaagtgattcta 5997360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 100
Target Start/End: Original strand, 35525366 - 35525435
Alignment:
Q  31 tgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgctataatt 100  Q
    ||||||||||| ||| | | |||||| ||||||||| || ||| |||||||| ||||||| |||||||||    
T  35525366 tgacatgtttgattgttgtcgagtagaattgattctaccaccagaattgattgtacttgaagctataatt 35525435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 102
Target Start/End: Complemental strand, 13384814 - 13384714
Alignment:
Q  2 aattgattatggagcaatagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgctataattt 101  Q
    |||||||| |||||   ||||||||||| ||||||||||||||| | | |||| | |||  ||||  ||||| ||||||||||| |||| |||| |||||    
T  13384814 aattgattttggaggtgtagaattgattctgacatgtttggttgttgtcgagtcgaatttgttctttctccaaaattgattctatttgaagctaaaattt 13384715  T
Q  102 g 102  Q
    |    
T  13384714 g 13384714  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 18355973 - 18355925
Alignment:
Q  19 tagaattgattttgacatgtttggttgcttttgagtaggattgattctg 67  Q
    |||||||||||||||||||| || ||| ||| |||||| ||||||||||    
T  18355973 tagaattgattttgacatgtatgattgttttcgagtagaattgattctg 18355925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 35495202 - 35495278
Alignment:
Q  19 tagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgcta 95  Q
    |||||||||||||||||||||| ||| || |  | ||| ||| ||| |||||| | |||||||||||||||| ||||    
T  35495202 tagaattgattttgacatgttttgtttctctaaattagaattaattttgcctctagaattgattctacttgaagcta 35495278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 37684350 - 37684418
Alignment:
Q  22 aattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttga 90  Q
    ||||||||  || ||||||||||| | | |||||| ||||||| || ||||| ||||||||||||||||    
T  37684350 aattgattccgaaatgtttggttgttgtggagtagaattgattttgtctccagaattgattctacttga 37684418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 35064987 - 35065081
Alignment:
Q  1 aaattgattatggagcaatagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgcta 95  Q
    |||||||||||||||   ||||||||||| |||||| |||||||||||| |||||| ||||||| |||||| |||||||||| ||||||| ||||    
T  35064987 aaattgattatggaggtgtagaattgattatgacatttttggttgctttcgagtagaattgattttgcctcaataattgattttacttgaagcta 35065081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 25318989 - 25319055
Alignment:
Q  19 tagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattcta 85  Q
    ||||||||||||||||||||||||||||| | |||||| ||||||| || ||||| |||||||||||    
T  25318989 tagaattgattttgacatgtttggttgctctcgagtagaattgattttgtctccagaattgattcta 25319055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 80
Target Start/End: Complemental strand, 26617767 - 26617709
Alignment:
Q  22 aattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattga 80  Q
    ||||||||||||||||||||| ||||||| | ||| ||||||| |||||||||||||||    
T  26617767 aattgattttgacatgtttggatgcttttcaatagaattgattttgcctccataattga 26617709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 23 - 85
Target Start/End: Complemental strand, 33560710 - 33560648
Alignment:
Q  23 attgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattcta 85  Q
    ||||||||||||||||||||||||| | |||||| ||||||| |||||| | |||||||||||    
T  33560710 attgattttgacatgtttggttgctctcgagtagaattgattttgcctctagaattgattcta 33560648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 95
Target Start/End: Original strand, 2635108 - 2635181
Alignment:
Q  22 aattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgcta 95  Q
    |||||||||||||||||||| |||||||| ||||| | ||||| |||||||| |||||||| | ||||| ||||    
T  2635108 aattgattttgacatgtttgattgcttttaagtagaactgattttgcctccagaattgattatgcttgaagcta 2635181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 46344992 - 46344904
Alignment:
Q  1 aaattgattatggagcaatagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttga 90  Q
    |||||||||||||||   || |||| ||| |||||||||||||||||||  ||||  ||||||| ||||||||||||| |||||||||||    
T  46344992 aaattgattatggaggtgtataattaattctgacatgtttggttgctttcaagtataattgattttgcctccataatt-attctacttga 46344904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 32 - 102
Target Start/End: Complemental strand, 32818500 - 32818430
Alignment:
Q  32 gacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgctataatttg 102  Q
    ||||| ||||||| |||| |||||| ||||||| |||||||| ||||||||||| |||| |||| ||||||    
T  32818500 gacatatttggtttctttcgagtagaattgattttgcctccagaattgattctatttgaagctagaatttg 32818430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 22683806 - 22683864
Alignment:
Q  20 agaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataatt 78  Q
    |||||||||||||||||||| | ||| |||||||||  ||||||| |||||||| ||||    
T  22683806 agaattgattttgacatgttggtttgtttttgagtaaaattgattttgcctccagaatt 22683864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 42153024 - 42152978
Alignment:
Q  19 tagaattgattttgacatgtttggttgcttttgagtaggattgattc 65  Q
    ||||||| ||||||||||||||| ||||| |||||||| ||||||||    
T  42153024 tagaatttattttgacatgtttgattgctcttgagtagaattgattc 42152978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 85
Target Start/End: Original strand, 8330066 - 8330123
Alignment:
Q  28 ttttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattcta 85  Q
    |||| ||||||||||||||| |  ||||  |||||||||||||||||||| |||||||    
T  8330066 tttttacatgtttggttgctctcaagtaaaattgattctgcctccataatggattcta 8330123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 90
Target Start/End: Complemental strand, 39733737 - 39733709
Alignment:
Q  62 attctgcctccataattgattctacttga 90  Q
    |||||||||||||||||||||||||||||    
T  39733737 attctgcctccataattgattctacttga 39733709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 34250494 - 34250418
Alignment:
Q  19 tagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgcta 95  Q
    |||||||| ||||||||||||||||| || | |||||| ||||||| |||||| | |||||||||||||||||||||    
T  34250494 tagaattgtttttgacatgtttggtttctctagagtagaattgattatgcctctagaattgattctacttgatgcta 34250418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 10898666 - 10898730
Alignment:
Q  21 gaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattcta 85  Q
    ||||| ||||||||||||||||||||| | |||||  ||||||| |||||| | |||||||||||    
T  10898666 gaattaattttgacatgtttggttgctctcgagtaaaattgattttgcctctagaattgattcta 10898730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 90
Target Start/End: Original strand, 5468719 - 5468786
Alignment:
Q  23 attgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttga 90  Q
    ||||||| ||||||||||| ||| | | || ||  |||||||||||||||||| ||||||||||||||    
T  5468719 attgattatgacatgtttgattgttgtcgattataattgattctgcctccatatttgattctacttga 5468786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 42439758 - 42439695
Alignment:
Q  22 aattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattcta 85  Q
    ||||||||||||||  ||||||||||| ||| ||| ||||||| | |||||| |||||||||||    
T  42439758 aattgattttgacacatttggttgcttgtgactagaattgatttttcctccagaattgattcta 42439695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 102
Target Start/End: Original strand, 9818717 - 9818759
Alignment:
Q  60 tgattctgcctccataattgattctacttgatgctataatttg 102  Q
    ||||| ||||||||||||||||||||||||| ||||| |||||    
T  9818717 tgattttgcctccataattgattctacttgaagctatgatttg 9818759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 95
Target Start/End: Original strand, 11648027 - 11648100
Alignment:
Q  22 aattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgcta 95  Q
    |||||||||||||||||||| ||||| | |||||| ||| ||| ||| |  | |||||||||||||||| ||||    
T  11648027 aattgattttgacatgtttgattgctgtcgagtagaatttattatgcatttaaaattgattctacttgaagcta 11648100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 18851243 - 18851142
Alignment:
Q  1 aaattgattatggagcaatagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgctataatt 100  Q
    |||||||||||||||   ||||||||| | |||| |||||||||||| |  | ||| |||||| ||  | | |||||||||||||||||| ||||| |||    
T  18851243 aaattgattatggagttgtagaattgactctgacgtgtttggttgctatcaattagaattgatcctatccctataattgattctacttgaagctatgatt 18851144  T
Q  101 tg 102  Q
    ||    
T  18851143 tg 18851142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 39097188 - 39097253
Alignment:
Q  1 aaattgattatggagcaatagaattgattttgacatgtttggttgcttttgagtaggattgattct 66  Q
    ||||||||||| |||   ||||||||||||||||||||||||||| |||   |||| |||||||||    
T  39097188 aaattgattatagaggtgtagaattgattttgacatgtttggttggtttcaggtagaattgattct 39097253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 98
Target Start/End: Complemental strand, 4848281 - 4848205
Alignment:
Q  22 aattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgctataa 98  Q
    |||||||| |||||||||||  | || | |||||| ||||||| ||  ||||||||||||||||||| | |||||||    
T  4848281 aattgattctgacatgtttgactactctcgagtagaattgattttggttccataattgattctacttaaagctataa 4848205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 6806313 - 6806381
Alignment:
Q  20 agaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctactt 88  Q
    |||||||||| ||||||||||||||  | ||||||   |||||||||||||  | ||||||||||||||    
T  6806313 agaattgattctgacatgtttggttattcttgagtgaaattgattctgcctttagaattgattctactt 6806381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 90
Target Start/End: Complemental strand, 13171865 - 13171833
Alignment:
Q  58 attgattctgcctccataattgattctacttga 90  Q
    |||||||||||||||| ||||||||||||||||    
T  13171865 attgattctgcctccaaaattgattctacttga 13171833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 19 - 103
Target Start/End: Complemental strand, 47322049 - 47321965
Alignment:
Q  19 tagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgctataatttgc 103  Q
    |||||||||||||||||||||| |||| | | |||||| ||||||||||| || |||||||||| ||||||| |||| |||||||    
T  47322049 tagaattgattttgacatgttttgttgttgtcgagtagaattgattctgcttctataattgattatacttgaagctagaatttgc 47321965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 28084031 - 28083948
Alignment:
Q  19 tagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgctataatttg 102  Q
    ||||||||||| |||||| |||||||| ||| |||||| ||||||| || || | ||||||||||||||||| |||| ||||||    
T  28084031 tagaattgattctgacatatttggttgttttcgagtagaattgattttgtcttcgtaattgattctacttgaagctagaatttg 28083948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 646127 - 646185
Alignment:
Q  24 ttgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgatt 82  Q
    |||||| ||||||||||||||| |||||||||| ||||||| |||||||| ||||||||    
T  646127 ttgattatgacatgtttggttgtttttgagtagaattgattttgcctccagaattgatt 646185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 24587851 - 24587922
Alignment:
Q  19 tagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttga 90  Q
    ||||||||||| ||||||||||||||||| |||||||| ||||| | || | ||| || |||||||||||||    
T  24587851 tagaattgattgtgacatgtttggttgctcttgagtagaattgactttgacgccagaactgattctacttga 24587922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 31362330 - 31362279
Alignment:
Q  33 acatgtttggttgcttttgagtaggattgattctgcctccataattgattct 84  Q
    |||||||||||||||||   |||| ||||||| |||||||||||||||||||    
T  31362330 acatgtttggttgctttcatgtagaattgattttgcctccataattgattct 31362279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 47892549 - 47892486
Alignment:
Q  1 aaattgattatggagcaatagaattgattttgacatgtttggttgcttttgagtaggattgatt 64  Q
    ||||||||||||||    |||||||||||  | ||||||||||||||||||||||| |||||||    
T  47892549 aaattgattatggaagtgtagaattgattccgtcatgtttggttgcttttgagtagaattgatt 47892486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 49824831 - 49824894
Alignment:
Q  19 tagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgatt 82  Q
    |||||||||||||||||| |||| ||||||| |||||  ||||||| || ||||| ||||||||    
T  49824831 tagaattgattttgacatctttgtttgctttcgagtacaattgattttggctccaaaattgatt 49824894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 95
Target Start/End: Original strand, 6021749 - 6021822
Alignment:
Q  22 aattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgcta 95  Q
    |||||||||||||| ||||| ||| |||  ||||| ||||||| |||||| | ||| |||||||||||| ||||    
T  6021749 aattgattttgacaagtttgattgatttcaagtagaattgattttgcctctagaatcgattctacttgaagcta 6021822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 15478144 - 15478116
Alignment:
Q  19 tagaattgattttgacatgtttggttgct 47  Q
    |||||||||||||||||||||||||||||    
T  15478144 tagaattgattttgacatgtttggttgct 15478116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 37131875 - 37131927
Alignment:
Q  18 atagaattgattttgacatgtttggttgcttttgagtaggattgattctgcct 70  Q
    ||||||||||||||| |||||||||||||| | ||||||  |||||| |||||    
T  37131875 atagaattgattttggcatgtttggttgctctcgagtagatttgattttgcct 37131927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 95
Target Start/End: Complemental strand, 5489986 - 5489913
Alignment:
Q  22 aattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgcta 95  Q
    |||||||| | |||||||||||||||  ||||||| ||| ||| |||||||| |||||||||||||||||||||    
T  5489986 aattgattcttacatgtttggttgctcctgagtagaattaattttgcctccaaaattgattctacttgatgcta 5489913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 95
Target Start/End: Original strand, 45004965 - 45005038
Alignment:
Q  22 aattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgcta 95  Q
    |||||||||||||||||||||||||| | || ||| ||||||| ||||| || |||||||||||||||| ||||    
T  45004965 aattgattttgacatgtttggttgctctcgaatagaattgattttgccttcagaattgattctacttgaagcta 45005038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 12306922 - 12306973
Alignment:
Q  22 aattgattttgacatgtttggttgcttttgagtaggattgattctgcctcca 73  Q
    |||||||||||||||||||||||||| |||||||| ||||||| ||||||||    
T  12306922 aattgattttgacatgtttggttgctcttgagtagaattgattttgcctcca 12306973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 28725195 - 28725112
Alignment:
Q  19 tagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgctataatttg 102  Q
    |||||||||||| |||||||||||||| ||| |  ||| |||||||| |||||||  ||||||| ||||||| |||| ||||||    
T  28725195 tagaattgatttagacatgtttggttgttttcgtttagaattgattcagcctccaatattgattatacttgaagctagaatttg 28725112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 17111819 - 17111864
Alignment:
Q  21 gaattgattttgacatgtttggttgcttttgagtaggattgattct 66  Q
    ||||||||| ||||||||||||||||||| |||||| |||||||||    
T  17111819 gaattgattctgacatgtttggttgctttcgagtagaattgattct 17111864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 12306676 - 12306727
Alignment:
Q  19 tagaattgattttgacatgtttggttgcttttgagtaggattgattctgcct 70  Q
    ||||||||||||||||||||||||||||| |  ||||| ||||||| |||||    
T  12306676 tagaattgattttgacatgtttggttgctctcaagtagaattgattttgcct 12306727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 41788259 - 41788327
Alignment:
Q  18 atagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctactt 88  Q
    ||||||||||||||| |||||||||||||| |||||||| | ||||  || ||| | ||||||||||||||    
T  41788259 atagaattgattttggcatgtttggttgctcttgagtagaaatgat--tgtctcaagaattgattctactt 41788327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 95
Target Start/End: Complemental strand, 41386955 - 41386882
Alignment:
Q  22 aattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgcta 95  Q
    |||||||| ||||||||||| ||||||| |||||  |||||||   ||| || |||||||||||||||| ||||    
T  41386955 aattgattctgacatgtttgattgctttcgagtataattgatttcaccttcagaattgattctacttgaagcta 41386882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 35098597 - 35098532
Alignment:
Q  23 attgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctactt 88  Q
    |||||||||||||||||||||| ||||||||||| ||||||| ||| ||||  |||||||||||||    
T  35098597 attgattttgacatgtttggttacttttgagtagaattgattttgcttccaggattgattctactt 35098532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 5724773 - 5724697
Alignment:
Q  19 tagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgcta 95  Q
    ||||||||||| |||||||||||| ||||||   |||| ||||||| |||||||| |||||||||||||||| ||||    
T  5724773 tagaattgattctgacatgtttggatgctttcaggtagaattgattttgcctccaaaattgattctacttgaagcta 5724697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 25195504 - 25195436
Alignment:
Q  22 aattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttga 90  Q
    |||||||| ||||||||||||||||| | |||||  |||||||||||||||  ||||||||||||||||    
T  25195504 aattgattctgacatgtttggttgctatcgagtataattgattctgcctccggaattgattctacttga 25195436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 6653754 - 6653817
Alignment:
Q  22 aattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattcta 85  Q
    ||||||||||||| |||||||||||| |  ||||| |||||||||||||| |||||||||||||    
T  6653754 aattgattttgacttgtttggttgctgtcaagtagaattgattctgcctctataattgattcta 6653817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 102
Target Start/End: Original strand, 26280547 - 26280630
Alignment:
Q  19 tagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgctataatttg 102  Q
    ||||||||||||||||||||||| ||| ||||  |||| ||||||| |||||| | ||||||||| |||||| |||| ||||||    
T  26280547 tagaattgattttgacatgtttgattgttttttggtagaattgattttgcctcaagaattgattccacttgaagctagaatttg 26280630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 765529 - 765446
Alignment:
Q  19 tagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgctataatttg 102  Q
    ||||||||||| |||| ||||||||||||||| ||||| | || || || ||| | |||||||||||||||| ||||| |||||    
T  765529 tagaattgattctgacgtgtttggttgcttttaagtagaactggttttggctcaagaattgattctacttgaagctatgatttg 765446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 102
Target Start/End: Original strand, 4910850 - 4910933
Alignment:
Q  19 tagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgctataatttg 102  Q
    ||||||||||| |||||||||||||||   |  | ||| |||||||||||||| | |||||||||||||||| ||||| |||||    
T  4910850 tagaattgattctgacatgtttggttgtcgtcaattagaattgattctgcctcaaaaattgattctacttgaagctatgatttg 4910933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 95
Target Start/End: Complemental strand, 6654232 - 6654157
Alignment:
Q  20 agaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgcta 95  Q
    |||||||||| || |||||||||||||| |||||||| ||||||| | ||| || |||| ||||||||||| ||||    
T  6654232 agaattgattatgtcatgtttggttgctattgagtagaattgatttttccttcagaattaattctacttgaagcta 6654157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 33 - 95
Target Start/End: Complemental strand, 2008631 - 2008569
Alignment:
Q  33 acatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgcta 95  Q
    |||||||||||||||||  ||||| ||||||| |||||||| |||| ||||||| ||||||||    
T  2008631 acatgtttggttgctttctagtagaattgattttgcctccagaattaattctacgtgatgcta 2008569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 85
Target Start/End: Complemental strand, 2234348 - 2234291
Alignment:
Q  28 ttttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattcta 85  Q
    |||||| ||||||||||||| |||||||| ||||||| |||||||  |||||||||||    
T  2234348 ttttgatatgtttggttgctcttgagtagaattgattttgcctcctgaattgattcta 2234291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 1485290 - 1485218
Alignment:
Q  19 tagaattgatt-ttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttga 90  Q
    ||||||||||| |||||||||||| ||||| |||||||| ||| ||| |||||  | ||||||||||||||||    
T  1485290 tagaattgattcttgacatgtttgtttgctcttgagtagaattaattttgcctttagaattgattctacttga 1485218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 2002625 - 2002566
Alignment:
Q  2 aattgattatggagcaatagaattgattttgacatgtttggttgcttttgagtaggattg 61  Q
    |||||||| |||||   ||||||||||||||||||||||||||| ||| |||||| ||||    
T  2002625 aattgattttggaggcgtagaattgattttgacatgtttggttgttttcgagtagaattg 2002566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 95
Target Start/End: Complemental strand, 2008498 - 2008405
Alignment:
Q  2 aattgattatggagcaatagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgcta 95  Q
    |||||||| |||||   |||||||| || ||||||||||| ||| ||| |||||| ||| ||| || |||||||||  ||||||||||| ||||    
T  2008498 aattgattttggaggtgtagaattgtttctgacatgtttgattgttttcgagtagaattcattttgtctccataatcaattctacttgaagcta 2008405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 7952870 - 7952781
Alignment:
Q  1 aaattgattatggagcaatagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttga 90  Q
    ||||| |||||||||   || |||||||| ||||||||||| ||| |||||||| |  || ||| |||||||| |||| |||||||||||    
T  7952870 aaattaattatggaggtgtaaaattgattatgacatgtttgattggttttgagttgatttaattttgcctccaaaatttattctacttga 7952781  T

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Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 18690620 - 18690661
Alignment:
Q  25 tgattttgacatgtttggttgcttttgagtaggattgattct 66  Q
    |||||||||||||||||||||||||  ||||| |||||||||    
T  18690620 tgattttgacatgtttggttgctttcaagtagaattgattct 18690661  T

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Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 31305993 - 31305965
Alignment:
Q  19 tagaattgattttgacatgtttggttgct 47  Q
    |||||||||||||||||||||||||||||    
T  31305993 tagaattgattttgacatgtttggttgct 31305965  T

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Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 34620828 - 34620904
Alignment:
Q  19 tagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgcta 95  Q
    |||||||||||||||||||||||||| || |  | ||| ||| ||| |||||||  |||||||||||| ||| ||||    
T  34620828 tagaattgattttgacatgtttggttcctataaactagaattaattttgcctccggaattgattctacatgaagcta 34620904  T

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Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 34748265 - 34748341
Alignment:
Q  19 tagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgcta 95  Q
    |||||||||||||||||||||||||| || |  | ||| ||| ||| |||||||  |||||||||||| ||| ||||    
T  34748265 tagaattgattttgacatgtttggttcctataaactagaattaattttgcctccggaattgattctacatgaagcta 34748341  T

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Target: scaffold0168 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 31768 - 31844
Alignment:
Q  19 tagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgcta 95  Q
    ||||||||||| ||||||||||||||| | | |||||  |||||||||||||||| |||||||| ||||||| ||||    
T  31768 tagaattgattctgacatgtttggttgttgtcgagtaaaattgattctgcctccaaaattgattatacttgaagcta 31844  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 1441524 - 1441453
Alignment:
Q  19 tagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttga 90  Q
    ||||||||| |||||||||||||||| ||||||||||| ||||||| || ||| ||||| || |||||||||    
T  1441524 tagaattgagtttgacatgtttggtttcttttgagtagaattgattttgtctctataatcgactctacttga 1441453  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 102
Target Start/End: Complemental strand, 41115507 - 41115422
Alignment:
Q  17 aatagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgctataatttg 102  Q
    ||||||| |||||||||||||||||| || |||  ||||| ||||||| ||| |  | |||||||||||||||| |||| ||||||    
T  41115507 aatagaactgattttgacatgtttggatgttttaaagtagaattgattttgcttgtagaattgattctacttgaagctagaatttg 41115422  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 90
Target Start/End: Complemental strand, 25359733 - 25359646
Alignment:
Q  2 aattgattatggagcaatagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttga 90  Q
    ||||||||||||||  ||||||||| || |  |||||||||||||| |  | ||  |||||||||||||||| ||||||||||||||||    
T  25359733 aattgattatggaggtatagaattgcttctaccatgtttggttgctgtcaaataa-attgattctgcctccagaattgattctacttga 25359646  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 54596763 - 54596823
Alignment:
Q  22 aattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgatt 82  Q
    |||||||| ||||||||||||||| |||  ||||| |||||||||||||||| || |||||    
T  54596763 aattgattatgacatgtttggttgttttcaagtagaattgattctgcctccaaaaatgatt 54596823  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 95
Target Start/End: Complemental strand, 7717462 - 7717388
Alignment:
Q  20 agaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgcta 95  Q
    |||||||||||||||||||| |||| |    |||||| ||||||| |||||||| |||||||||||||||| ||||    
T  7717462 agaattgattttgacatgtt-ggttccgccagagtagaattgattttgcctccagaattgattctacttgaagcta 7717388  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 7717516 - 7717453
Alignment:
Q  19 tagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgatt 82  Q
    |||| ||||||||||||||||||||| ||   |||||| ||||||| |||||||| ||||||||    
T  7717516 tagagttgattttgacatgtttggttcctccagagtagaattgattttgcctccagaattgatt 7717453  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 32523484 - 32523414
Alignment:
Q  19 tagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttg 89  Q
    |||||||||||  ||| |||||||||||||| |||||  || |||| |||||||||||||  |||||||||    
T  32523484 tagaattgattcagacttgtttggttgctttcgagtaaaatagattttgcctccataattatttctacttg 32523414  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 3845255 - 3845203
Alignment:
Q  19 tagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctc 71  Q
    ||||||||||||||||||||||| ||| | |  ||||| ||||||||||||||    
T  3845255 tagaattgattttgacatgtttgtttgatctcaagtagaattgattctgcctc 3845203  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 97
Target Start/End: Original strand, 33548188 - 33548264
Alignment:
Q  22 aattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattct-acttgatgctata 97  Q
    ||||||||||||||||||||| |||| || ||||| ||||||| | ||| || ||| |||||| |||||| ||||||    
T  33548188 aattgattttgacatgtttggatgctattaagtagaattgatttttccttcaaaatggattctaacttgaagctata 33548264  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 35264551 - 35264483
Alignment:
Q  22 aattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttga 90  Q
    |||||||| | ||||||||||||||| | ||  || |||||||||||||||| |  |||||||||||||    
T  35264551 aattgattctcacatgtttggttgctctcgaagagaattgattctgcctccaaatatgattctacttga 35264483  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 102
Target Start/End: Complemental strand, 40736677 - 40736597
Alignment:
Q  22 aattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgctataatttg 102  Q
    ||||||||||||| |||||| ||| | | |||||  ||||||| ||| |||  ||||||||||||||||  ||||||||||    
T  40736677 aattgattttgacgtgtttgattgttgtcgagtaaaattgattttgcatccgaaattgattctacttgaaactataatttg 40736597  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 95
Target Start/End: Complemental strand, 680412 - 680344
Alignment:
Q  27 attttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgcta 95  Q
    |||||||||||||| |||||||| || ||| | ||||| |||||||| |||||||||||||||| ||||    
T  680412 attttgacatgtttagttgctttcgaatagaactgattttgcctccagaattgattctacttgaagcta 680344  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 31453340 - 31453408
Alignment:
Q  34 catgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgctataatttg 102  Q
    |||||||||||| | |||||||| ||| ||| |||||| |||||||||||||||||| |||| ||||||    
T  31453340 catgtttggttgatgttgagtagaatttattttgcctctataattgattctacttgaagctaaaatttg 31453408  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 42740919 - 42740995
Alignment:
Q  19 tagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgcta 95  Q
    |||||||||||||||||||||  || ||||| || ||||| ||| | | ||||||||||||||||||||||| ||||    
T  42740919 tagaattgattttgacatgttccgtagctttcgaataggactgaattttcctccataattgattctacttgaagcta 42740995  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 7630361 - 7630412
Alignment:
Q  22 aattgattttgacatgtttggttgcttttgagtaggattgattctgcctcca 73  Q
    ||||||||||||||||||||||||||||  ||||| ||||||| ||||||||    
T  7630361 aattgattttgacatgtttggttgctttcaagtagaattgattttgcctcca 7630412  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 15928595 - 15928532
Alignment:
Q  1 aaattgattatggagcaatagaattgattttgacatgtttggttgcttttgagtaggattgatt 64  Q
    ||||||||| |||||   ||||||||||||||||||||||||||| | |||||||| |||||||    
T  15928595 aaattgattctggaggtgtagaattgattttgacatgtttggttgttgttgagtagaattgatt 15928532  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 36987255 - 36987189
Alignment:
Q  19 tagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattcta 85  Q
    |||||||||||||||||||||||| | ||||||||||  ||||||| ||| |||| || ||||||||    
T  36987255 tagaattgattttgacatgtttggattcttttgagtataattgattttgcttccagaaatgattcta 36987189  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 2002838 - 2002762
Alignment:
Q  19 tagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgcta 95  Q
    |||||||||| |||||||  |||||||||||  ||||| ||||||| |||||||| |  ||||||||||||| ||||    
T  2002838 tagaattgatgttgacatacttggttgctttctagtagaattgattttgcctccagacctgattctacttgaagcta 2002762  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 101
Target Start/End: Complemental strand, 33502989 - 33502909
Alignment:
Q  22 aattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattct-acttgatgctataattt 101  Q
    |||||||||||||||||||||||||| | |||||  | ||||| ||| |||| |||||||||| |||||| |||| |||||    
T  33502989 aattgattttgacatgtttggttgctctcgagtaaaactgattttgcatccagaattgattctaacttgaagctagaattt 33502909  T

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Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 37420340 - 37420272
Alignment:
Q  19 tagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctact 87  Q
    |||||||||||||||||||||||| | |  | |||||| ||||||| |||||| | |||||||||||||    
T  37420340 tagaattgattttgacatgtttggcttccctagagtagaattgattttgcctctagaattgattctact 37420272  T

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Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 43501068 - 43501132
Alignment:
Q  2 aattgattatggagcaatagaattgattttgacatgtttggttgcttttgagtaggattgattct 66  Q
    |||||||  ||||||  ||||||||||| |||||||||||||||||||  ||||| |||||||||    
T  43501068 aattgatcctggagctgtagaattgattctgacatgtttggttgctttcaagtagaattgattct 43501132  T

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Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 10644546 - 10644616
Alignment:
Q  19 tagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttga 90  Q
    ||||||||| | |||||||||||  || ||| |||||| |||||||||||||||| |||| |||||||||||    
T  10644546 tagaattgactctgacatgtttgtctg-tttcgagtagaattgattctgcctccaaaatttattctacttga 10644616  T

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Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 90
Target Start/End: Original strand, 32777924 - 32777983
Alignment:
Q  31 tgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttga 90  Q
    ||||||||||||||| ||| | |||| ||||||| ||||||||||||| |||| ||||||    
T  32777924 tgacatgtttggttgttttcgtgtagaattgattttgcctccataatttattcaacttga 32777983  T

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Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 42774996 - 42774910
Alignment:
Q  1 aaattgattatggagcaatagaattgattttgacatgtttggttg--cttttgagtaggattgattctgcctccataattgattcta 85  Q
    ||||||||| | |||  ||||||||||||||||||||||  ||||  || |||||||  ||||||||||||| || |||||||||||    
T  42774996 aaattgattctagaggtatagaattgattttgacatgttccgttgctctcttgagtataattgattctgccttcaaaattgattcta 42774910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 1977005 - 1976940
Alignment:
Q  22 aattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctact 87  Q
    |||||||||||||||||||| || |||   ||||| ||||||| || ||||| |||||||||||||    
T  1977005 aattgattttgacatgtttgctttcttaaaagtagaattgattttgtctccaaaattgattctact 1976940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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