View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2937_high_2 (Length: 329)
Name: NF2937_high_2
Description: NF2937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2937_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-169; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 14960048 - 14959733
Alignment:
| Q |
1 |
cttaggccgacatcactgcattaaagcagcattatggttatgcactcaaactccacatgacatcactgatgtgggaaaaaattaagttaacaagactgcc |
100 |
Q |
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||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
14960048 |
cttaggctgacatcactgcattaaagcagcattatggttatgaactcaaactccacatgacatcactgatgtgggaaaaaagtaagttaacaagactgcc |
14959949 |
T |
|
| Q |
101 |
aattctatatagtaagtttgaataaatagcttaattaagaacttagagcttgtttggattgaattatttgaacctgacataagcacttgtgggactgttt |
200 |
Q |
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| T |
14959948 |
aattctatatagtaagtttgaataaatagcttaattaagaacttagagcttgtttggattgaattatttgaacctgacataagcacttgtgggactgttt |
14959849 |
T |
|
| Q |
201 |
gagagagtttgtggcatcaacttatggcatgttaaggggcttttcttagcttatttccatacataagctcttaaagatagcttacgtaaatagcttatat |
300 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14959848 |
gagagagtttgtggcatcaacttatgacatgttaaggggcttttcttagcttatttccatacataagctcttaaagatagcttacgtaaatagcttatat |
14959749 |
T |
|
| Q |
301 |
aaaaaatggtttttat |
316 |
Q |
| |
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|||||||||||||||| |
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| T |
14959748 |
aaaaaatggtttttat |
14959733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 41016295 - 41016240
Alignment:
| Q |
178 |
cataagcacttgtgggactgtttgagagagtttgtggcatcaacttatggcatgtt |
233 |
Q |
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| T |
41016295 |
cataagcacttgtaggactgtataagagagtttatggaaacaacttatggcatgtt |
41016240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 1084088 - 1084124
Alignment:
| Q |
174 |
ctgacataagcacttgtgggactgtttgagagagttt |
210 |
Q |
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| T |
1084088 |
ctgacataagcacttgtgaaactgtttgagagagttt |
1084124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 22667524 - 22667488
Alignment:
| Q |
174 |
ctgacataagcacttgtgggactgtttgagagagttt |
210 |
Q |
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| T |
22667524 |
ctgacataagcacttgtgagactgtttgagagagttt |
22667488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 22724163 - 22724127
Alignment:
| Q |
174 |
ctgacataagcacttgtgggactgtttgagagagttt |
210 |
Q |
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|||||||||||||||||| |||||||||||||||||| |
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| T |
22724163 |
ctgacataagcacttgtgagactgtttgagagagttt |
22724127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 207
Target Start/End: Original strand, 11041180 - 11041208
Alignment:
| Q |
179 |
ataagcacttgtgggactgtttgagagag |
207 |
Q |
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||||||||||||||||||||||||||||| |
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|
| T |
11041180 |
ataagcacttgtgggactgtttgagagag |
11041208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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