View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2937_high_5 (Length: 221)
Name: NF2937_high_5
Description: NF2937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2937_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 46998407 - 46998201
Alignment:
| Q |
1 |
tcatcatcactaaacaaacaacatttcatagagaacctggtagagaaactgaaacactccctttccctcacacttttccatttccatcccctctcaggcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46998407 |
tcatcatcactaaacaaacaacatttcatagagaacttggtagagaaactgaaacactccctttccctcacacttttccatttccatcccctctcaggcc |
46998308 |
T |
|
| Q |
101 |
gtcttgttactaaaaaatctgaagaccctcatttttacactgtttttgtcgattgcaaaaacagtcttggagctaaatttattcatgcaactttagatat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
46998307 |
gtcttgttactaaaaaatctgaagaccctcatttttacactgtttttgttgattgcaaaaacagtctcggagctaaatttattcatgcaactttagatat |
46998208 |
T |
|
| Q |
201 |
caccatc |
207 |
Q |
| |
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||||||| |
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| T |
46998207 |
caccatc |
46998201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 46981331 - 46981126
Alignment:
| Q |
1 |
tcatcatcactaaacaaacaacatttcatagagaacctggtagagaaactgaaacactccctttccctcacacttttccatttccatcccctctcaggcc |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| | |
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| T |
46981331 |
tcatcatcactaaaccaacaacatttcatagagaacctggtggagaaactgaaacactccctttccctcacgcttttccatttctatcccctctcaggtc |
46981232 |
T |
|
| Q |
101 |
gtcttgttactaaaaaatctgaagaccctcatttttacactgtttttgtcgattgcaaaaacagtcttggagctaaatttattcatgcaactttagatat |
200 |
Q |
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||||||||||||||||||| ||||| ||| ||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
46981231 |
gtcttgttactaaaaaatccgaagatcctgattcttacactgttttcgtcgattgcaaaaacagtcccggagctaaatttattcatgcaactttagatat |
46981132 |
T |
|
| Q |
201 |
caccat |
206 |
Q |
| |
|
|||||| |
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|
| T |
46981131 |
caccat |
46981126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 46 - 207
Target Start/End: Complemental strand, 46996114 - 46995953
Alignment:
| Q |
46 |
aaactgaaacactccctttccctcacacttttccatttccatcccctctcaggccgtcttgttactaaaaaatctgaagaccctcatttttacactgttt |
145 |
Q |
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|
||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||| ||||||| ||||||||||| |
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| T |
46996114 |
aaactcaaacactccctttccctcacacttttccatttctatcccctctcaggtcgtcttgttactaaaaaatccgaagatcctcattcttacactgttt |
46996015 |
T |
|
| Q |
146 |
ttgtcgattgcaaaaacagtcttggagctaaatttattcatgcaactttagatatcaccatc |
207 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
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|
| T |
46996014 |
ttgtcgattgcaaaaacagtctcggagctaaatttattcatgcaactttagatattaccatc |
46995953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 2 - 206
Target Start/End: Complemental strand, 46975343 - 46975139
Alignment:
| Q |
2 |
catcatcactaaacaaacaacatttcatagagaacctggtagagaaactgaaacactccctttccctcacacttttccatttccatcccctctcaggccg |
101 |
Q |
| |
|
|||||||||||||| ||||||| ||||| |||||||| || || ||||| |||||||| ||||| ||||||||||| |||| ||||||| || || || |
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|
| T |
46975343 |
catcatcactaaaccaacaacacttcattgagaacctagtggacaaactcaaacactctctttctctcacactttttcattattatcccctgtctggtcg |
46975244 |
T |
|
| Q |
102 |
tcttgttactaaaaaatctgaagaccctcatttttacactgtttttgtcgattgcaaaaacagtcttggagctaaatttattcatgcaactttagatatc |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
46975243 |
tcttgttactaaaaaatctgaagaccctcattcttacactgttttcgttgattgcaaaaacagtcgcggagctagatttattcatgcaactttagatatc |
46975144 |
T |
|
| Q |
202 |
accat |
206 |
Q |
| |
|
||||| |
|
|
| T |
46975143 |
accat |
46975139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 102 - 204
Target Start/End: Complemental strand, 47001998 - 47001896
Alignment:
| Q |
102 |
tcttgttactaaaaaatctgaagaccctcatttttacactgtttttgtcgattgcaaaaacagtcttggagctaaatttattcatgcaactttagatatc |
201 |
Q |
| |
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|||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |
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| T |
47001998 |
tcttgttactcaaaaatctgaagatcctcattcttacactgtttttgtcgattgcaaaaacagtcgaggagctaaatttattcttgcaactttagatatc |
47001899 |
T |
|
| Q |
202 |
acc |
204 |
Q |
| |
|
||| |
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|
| T |
47001898 |
acc |
47001896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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