View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2937_low_1 (Length: 718)
Name: NF2937_low_1
Description: NF2937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2937_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 657; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 657; E-Value: 0
Query Start/End: Original strand, 1 - 702
Target Start/End: Original strand, 50275449 - 50276154
Alignment:
| Q |
1 |
gtctctgaaagagattgttgcaaagcttccatgccttgagataatgcatcttcagcctgttgacaagaatgctgcagattgaagatcgccatcaattgct |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50275449 |
gtctctgaaagagattgttgcaaaccttccattccttgagataatgcatcttcagcctgttgacaagaatgctgcagattgaagatcgccatcaattgct |
50275548 |
T |
|
| Q |
101 |
gatccgttaacgcctcgaggtggtttctaattatctgaatctcaagaggaaaaaacaaatgcaaagaaagaagtaagagttaacaaaatgtatatatttg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50275549 |
gatccgttaacgcctcgaggtggtttctaattatctgaatctcaagaggaaaatacaaatgcaaagaaagaagtaagagttaacaaaatgtatatatttg |
50275648 |
T |
|
| Q |
201 |
ttagttaattactagtggtagtttgtttttagcctctataa----agtcttgatgtaaccgcttattcattctaaatatcatttctattttactatctaa |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50275649 |
ttagttaattactagtggtagtttgtttttagcctctataaataaagtcttgatgtaatcgcttattcattctaaatatcatttctattttactatctaa |
50275748 |
T |
|
| Q |
297 |
acttttctcttatccacggcttccatcaagaattgtaataatattttcgaacaaaatcaccttgagaagttcggatgaacggaatccaccaagccacatg |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50275749 |
acttttctcttatccacggcttccatcaagaattgtaataatattttcaaacaaaatcaccttgagaagttcggatgaacggaatccaccaagccacatg |
50275848 |
T |
|
| Q |
397 |
aaacatctttctgcaggtgtcttccacaacccagaaagtatgtgaaatacatcagcctttgcacctatgctcttcaacttgtataattcatcataatgta |
496 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50275849 |
aaacatctttctgcaggtgtcttccacaacccagaaagtatgtgaaatacatcagcctttgcacctatgctcttcaacttgtataattcatcataatgta |
50275948 |
T |
|
| Q |
497 |
ccatgacaccatcaacaagaagatgcagttcattatcgcccatttgagaatttatagctgatcttatgtcattgattagtcgttgatgctcatctaccca |
596 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
50275949 |
ccatgacaccatcaacaagaagatgcagttcattatcacccatttgagaatttatagctgatcttatgtcattgattagtcgttgatgctcgtctaccca |
50276048 |
T |
|
| Q |
597 |
acgagcatagtccatatcaaatgctatcgaacctgaaggtttaaaatacttcatcagtcacatactcacatccctccataattaatttgcaaaatgcctt |
696 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50276049 |
acgagcatagtccatatcaaatgctaccgaacctgaaggtttaaaatacttcatcagtcacatactcacatccctccataattaatttgcaaaatgcctt |
50276148 |
T |
|
| Q |
697 |
cttaat |
702 |
Q |
| |
|
|||||| |
|
|
| T |
50276149 |
cttaat |
50276154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 657; E-Value: 0
Query Start/End: Original strand, 1 - 702
Target Start/End: Original strand, 50279473 - 50280178
Alignment:
| Q |
1 |
gtctctgaaagagattgttgcaaagcttccatgccttgagataatgcatcttcagcctgttgacaagaatgctgcagattgaagatcgccatcaattgct |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50279473 |
gtctctgaaagagattgttgcaaaccttccattccttgagataatgcatcttcagcctgttgacaagaatgctgcagattgaagatcgccatcaattgct |
50279572 |
T |
|
| Q |
101 |
gatccgttaacgcctcgaggtggtttctaattatctgaatctcaagaggaaaaaacaaatgcaaagaaagaagtaagagttaacaaaatgtatatatttg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50279573 |
gatccgttaacgcctcgaggtggtttctaattatctgaatctcaagaggaaaatacaaatgcaaagaaagaagtaagagttaacaaaatgtatatatttg |
50279672 |
T |
|
| Q |
201 |
ttagttaattactagtggtagtttgtttttagcctctataa----agtcttgatgtaaccgcttattcattctaaatatcatttctattttactatctaa |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50279673 |
ttagttaattactagtggtagtttgtttttagcctctataaataaagtcttgatgtaatcgcttattcattctaaatatcatttctattttactatctaa |
50279772 |
T |
|
| Q |
297 |
acttttctcttatccacggcttccatcaagaattgtaataatattttcgaacaaaatcaccttgagaagttcggatgaacggaatccaccaagccacatg |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50279773 |
acttttctcttatccacggcttccatcaagaattgtaataatattttcaaacaaaatcaccttgagaagttcggatgaacggaatccaccaagccacatg |
50279872 |
T |
|
| Q |
397 |
aaacatctttctgcaggtgtcttccacaacccagaaagtatgtgaaatacatcagcctttgcacctatgctcttcaacttgtataattcatcataatgta |
496 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50279873 |
aaacatctttctgcaggtgtcttccacaacccagaaagtatgtgaaatacatcagcctttgcacctatgctcttcaacttgtataattcatcataatgta |
50279972 |
T |
|
| Q |
497 |
ccatgacaccatcaacaagaagatgcagttcattatcgcccatttgagaatttatagctgatcttatgtcattgattagtcgttgatgctcatctaccca |
596 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
50279973 |
ccatgacaccatcaacaagaagatgcagttcattatcacccatttgagaatttatagctgatcttatgtcattgattagtcgttgatgctcgtctaccca |
50280072 |
T |
|
| Q |
597 |
acgagcatagtccatatcaaatgctatcgaacctgaaggtttaaaatacttcatcagtcacatactcacatccctccataattaatttgcaaaatgcctt |
696 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50280073 |
acgagcatagtccatatcaaatgctaccgaacctgaaggtttaaaatacttcatcagtcacatactcacatccctccataattaatttgcaaaatgcctt |
50280172 |
T |
|
| Q |
697 |
cttaat |
702 |
Q |
| |
|
|||||| |
|
|
| T |
50280173 |
cttaat |
50280178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 589 - 702
Target Start/End: Original strand, 50287709 - 50287822
Alignment:
| Q |
589 |
tctacccaacgagcatagtccatatcaaatgctatcgaacctgaaggtttaaaatacttcatcagtcacatactcacatccctccataattaatttgcaa |
688 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50287709 |
tctacccaacgagcatagtccatatcaaatgctaccgaacctgaaggtttaaaatacttcatcagtcacatactcacatccctccataattaatttgcaa |
50287808 |
T |
|
| Q |
689 |
aatgccttcttaat |
702 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
50287809 |
aatgccttcttaat |
50287822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 317; Significance: 1e-178; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 363 - 702
Target Start/End: Complemental strand, 14462668 - 14462326
Alignment:
| Q |
363 |
aagttcggatgaacggaatccaccaagccacatgaaacatctttctgcaggtgtcttccacaacccagaaagtatgtgaaatacatcagcctttgcacct |
462 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14462668 |
aagttcggatgaacggaatccaccaagccacatgaaacatctttctgcaggtgtcttccacaacccagaaagtatgtgaaatacatcagcctttgcacct |
14462569 |
T |
|
| Q |
463 |
atgctcttcaacttgtataattcatcataatgtaccatgacaccatcaacaagaaga---tgcagttcattatcgcccatttgagaatttatagctgatc |
559 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14462568 |
atgctcttcaacttgtataattcatcataatgtaccatgacaccatcaacaagaagaagatgcagttcattatcgcccatttgagaatttatagctgatc |
14462469 |
T |
|
| Q |
560 |
ttatgtcattgattagtcgttgatgctcatctacccaacgagcatagtccatatcaaatgctatcgaacctgaaggtttaaaatacttcatcagtcacat |
659 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
14462468 |
ttatgtcattgatttgtcgttcatgctcatctacccaacgagcatagtccatatcaaatgctaccgaacctgaaggtttaaaatacttcatcagtcacat |
14462369 |
T |
|
| Q |
660 |
actcacatccctccataattaatttgcaaaatgccttcttaat |
702 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14462368 |
actcacatccctccataattaatttgcaaaatgccttcttaat |
14462326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 86; Significance: 1e-40; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 353 - 622
Target Start/End: Complemental strand, 22610283 - 22610014
Alignment:
| Q |
353 |
tcaccttgagaagttcggatgaacggaatccaccaagccacatgaaacatctttctgcaggtgtcttccacaacccagaaagtatgtgaaatacatcagc |
452 |
Q |
| |
|
|||||||||||| ||| |||||||| ||| ||||| |||| || ||| |||||||| | |||||||||||||||||| | || |||||||||||||||| |
|
|
| T |
22610283 |
tcaccttgagaatttcagatgaacgaaatgcaccatgccaaataaaaaatctttctactggtgtcttccacaacccatagagcatgtgaaatacatcagt |
22610184 |
T |
|
| Q |
453 |
ctttgcacctatgctcttcaacttgtataattcatcataatgtaccatgacaccatcaacaagaagatgcagttcattatcgcccatttgagaatttata |
552 |
Q |
| |
|
|||||| ||||||||||| ||| | |||| |||| || |||| ||| |||||||| ||||| ||||||| ||||||||| |||||||||||||||| |
|
|
| T |
22610183 |
ctttgcccctatgctctttaacctaaataactcattatgatgtgacataacaccatcgacaagcagatgcaattcattatcacccatttgagaatttaac |
22610084 |
T |
|
| Q |
553 |
gctgatcttatgtcattgattagtcgttgatgctcatctacccaacgagcatagtccatatcaaatgcta |
622 |
Q |
| |
|
|| ||||||| ||||||| | ||||||||||| || |||||| | | || ||||| |||||||||| |
|
|
| T |
22610083 |
gccgatcttagatcattgagcatacgttgatgctcgtcaacccaatgggtgtattccatgtcaaatgcta |
22610014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 22610675 - 22610624
Alignment:
| Q |
8 |
aaagagattgttgcaaagcttccatgccttgagataatgcatcttcagcctg |
59 |
Q |
| |
|
|||||||||||| ||| ||||||||||| |||||||| ||||| |||||||| |
|
|
| T |
22610675 |
aaagagattgtttcaatgcttccatgccgtgagataaagcatcctcagcctg |
22610624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 353 - 424
Target Start/End: Complemental strand, 14931491 - 14931420
Alignment:
| Q |
353 |
tcaccttgagaagttcggatgaacggaatccaccaagccacatgaaacatctttctgcaggtgtcttccaca |
424 |
Q |
| |
|
|||||||||||||||| || || || || ||||||||||| | |||||| ||||| |||||||| ||||||| |
|
|
| T |
14931491 |
tcaccttgagaagttcagacgaccgaaaaccaccaagccataagaaacacctttcagcaggtgttttccaca |
14931420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University