View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2937_low_10 (Length: 243)
Name: NF2937_low_10
Description: NF2937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2937_low_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 20062464 - 20062235
Alignment:
| Q |
1 |
ctaacattgttccagctattcgtgtactgatatgggtattcccgtcttcattaagcttagctaaaccaaagtcagagatcttggcattaagatccttgtc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20062464 |
ctaacattgttccagctattcgtgtactgatatgggtattcccgtcttcattaagcttagctaaaccaaagtcagagatcttggcattaagatccttgtc |
20062365 |
T |
|
| Q |
101 |
aagtaatacgttagttggcttaatatccctgtgtactattttcaatgttgattcctcatgaagataagctaacccctttgctataccaagacagatcttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20062364 |
aagtaatacgttagttggcttaatatccctgtgtactattttcaatgttgattcctcatgaagataagctaacccctttgctataccaagacagatcttc |
20062265 |
T |
|
| Q |
201 |
attcttgtaggccagtccaagtgcagcttc |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
20062264 |
attcttgtaggccagtccaagtgcagcttc |
20062235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 31463173 - 31462952
Alignment:
| Q |
1 |
ctaacattgttccagctattcgtgtactgatatgggtattcccgtcttcattaagcttagctaaaccaaagtcagagatcttggcattaagatccttgtc |
100 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||||||| | ||||||| |||||| |||||||| || ||||||||||| ||||| |||| ||| || |
|
|
| T |
31463173 |
ctaacattgtcccagctattcgtgtgctgatatgggtattttcttcttcatcaagcttcgctaaaccgaaatcagagatctttgcatttagattcttatc |
31463074 |
T |
|
| Q |
101 |
aagtaatacgttagttggcttaatatccctgtgtactattttcaatgttgattcctcatgaagataagctaacccctttgctataccaagacagatcttc |
200 |
Q |
| |
|
||||| ||||| |||| |||||||| || ||||||||||||||| |||||||||||||||| |||||||| ||| ||||||| || | |||||||||| |
|
|
| T |
31463073 |
gagtaagacgttggttgctttaatatctctatgtactattttcaatcttgattcctcatgaaggtaagctaaaccccttgctatcccgacacagatcttc |
31462974 |
T |
|
| Q |
201 |
attcttgtaggccagtccaagt |
222 |
Q |
| |
|
||||| ||| |||||||||||| |
|
|
| T |
31462973 |
attctcgtacgccagtccaagt |
31462952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University