View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2937_low_2 (Length: 571)
Name: NF2937_low_2
Description: NF2937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2937_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 25 - 555
Target Start/End: Complemental strand, 52512387 - 52511837
Alignment:
| Q |
25 |
ttgtttcgaggcgtcaatgtcttaaatgtttgtgttcaactccatttttaattaatgcaaccaactcagcagcaaccgctcttgataagcctcctggttg |
124 |
Q |
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| T |
52512387 |
ttgtttcgaggcgtcaatgtcttaaatgtttgtgttcaactccatttttaattaatgcaaccaactcagcagcaaccgctcttgataagcctcctggttg |
52512288 |
T |
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| Q |
125 |
cagaaattgtggtggaagtggtaacatcatttgtgagtcctcttctcttttctcctcattctttttta-----------ataataatattcttcttcctt |
213 |
Q |
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| T |
52512287 |
cagaaattgtggtggaagtggtaacatcatttgtgagtcctcttctcttttctcttcattctttgttataataataataataataataatattcttcctt |
52512188 |
T |
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| Q |
214 |
attataatactacttttcattt----------aggtgatatgtgtggtggtacaggaaaatggaaagctcttaacaggaagcgagcacaagatgtttatg |
303 |
Q |
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| T |
52512187 |
attataatactacttttcatttcatttcatttaggtgatatgtgtggtggtacaggaaaatggaaagctcttaacaggaagcgagcacaagatgtttatg |
52512088 |
T |
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| Q |
304 |
aatttactgaatgtcctaattgttatggtatcattcattcttctactttgctcatttcnnnnnnnncttagtaaacgactaaattgacagattttccgta |
403 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||| |
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| T |
52512087 |
aatttactgaatgtcctaattgttatggtatcattcattcttctaatttgctcatttcttttttt-cttagtaaacgactaaattgactgattttccgta |
52511989 |
T |
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| Q |
404 |
ggtcgaggaaagcttgtctgccctgtttgtttaggaactggtgtgccaaacaataaaggtcttctcaggaggcctgacgcaaagaaactgcttgataaga |
503 |
Q |
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| T |
52511988 |
ggtcgaggaaagcttgtctgccctgtttgtttaggaactggtgtgccaaacaataaaggtcttctcaggaggcctgacgcaaagaaactgcttgataaga |
52511889 |
T |
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| Q |
504 |
tgtataatggacgcctacttccaaattcttagaaggtatgtatactactcat |
555 |
Q |
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| T |
52511888 |
tgtataatggacgcctacttcccaattcttagaaggtatgtatactactcat |
52511837 |
T |
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