View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2937_low_4 (Length: 341)
Name: NF2937_low_4
Description: NF2937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2937_low_4 |
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| [»] chr3 (7 HSPs) |
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| [»] chr8 (4 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 19 - 341
Target Start/End: Complemental strand, 29518924 - 29518602
Alignment:
| Q |
19 |
aataattctttcacgctcaatataacgtttcaagaatcttgtttgatttcctgtttgttatgttgttatctaatatcttataacgttgtttgaaaagtta |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
29518924 |
aataattctttcacgctcaatataacgtttcaagaatcttgtttgatttcctgtttgttatgctgttatctaatgtcttataacgttgtttgaaaagttc |
29518825 |
T |
|
| Q |
119 |
cccaaactaaatcaacttttctaagtgggttgggaaaccaatctgttttgttctataggctatattgtattgatgatatatgcatatatcatttcagcta |
218 |
Q |
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|||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
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| T |
29518824 |
cccaaactaaatgaatatttctaagtggtttgggaaaccaatctgttttgttctataggctatattgtattgatgatatatgaatatatcatttcaggta |
29518725 |
T |
|
| Q |
219 |
cgtcccaaagctgcacagtttcaaaagaaagggtgtgacttcgcatgtaaccttgaattgttcttttaccaagtgtgtggctgctctcgatgaactggaa |
318 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||| ||||||||||||||| ||| |
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| T |
29518724 |
catcccaaagctgcacagtttcaaaagaaagggtgtgacttcgcatgtaacctcggattgttctcttaccaagtgtgtggatgctctcgatgaactagaa |
29518625 |
T |
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| Q |
319 |
gacatttcagatgatgcctatgg |
341 |
Q |
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||||||||||||||||| ||||| |
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| T |
29518624 |
gacatttcagatgatgcttatgg |
29518602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 19 - 341
Target Start/End: Original strand, 5333145 - 5333469
Alignment:
| Q |
19 |
aataattctttcacgctcaatataacgtttcaagaatcttgtttgatttcctgtttgttatgttgttatctaatatcttataacgttgtttgaaaagtta |
118 |
Q |
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||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
5333145 |
aataattttttcacactcaatataacgtttcaagaatcttgtttgatttcctgtttgttatgctgttatctaatatcttataacgttgtttgaaaagttc |
5333244 |
T |
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| Q |
119 |
cccaaactaaatcaact--tttctaagtgggttgggaaaccaatctgttttgttctataggctatattgtattgatgatatatgcatatatcatttcagc |
216 |
Q |
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|||||||||||| || | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
5333245 |
cccaaactaaatgaattcatttctaagtggtttgggaaaccaatctgttttgttctataggctatattgtattgatgatatatgaatatatcatttcagg |
5333344 |
T |
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| Q |
217 |
tacgtcccaaagctgcacagtttcaaaagaaagggtgtgacttcgcatgtaaccttgaattgttcttttaccaagtgtgtggctgctctcgatgaactgg |
316 |
Q |
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||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||| ||||||||||||||| | |
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| T |
5333345 |
tacatcctaaagctgcacagtttcaaaagaaagggtgtgacttcgcatgtaacctcggattgttctcttaccaagtgtgtggatgctctcgatgaactag |
5333444 |
T |
|
| Q |
317 |
aagacatttcagatgatgcctatgg |
341 |
Q |
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||||||||||||||||||| ||||| |
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| T |
5333445 |
aagacatttcagatgatgcttatgg |
5333469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 38274829 - 38274752
Alignment:
| Q |
19 |
aataattctttcacgctcaatataacgtttcaagaatcttgtttgatttcctgtttgttatgttgttatctaatatct |
96 |
Q |
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||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
38274829 |
aataattctttcatgctcaatataatgtttcaagaatcttgtttgatttcctgtttattatgttgttatctaatatct |
38274752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 170 - 257
Target Start/End: Complemental strand, 38274754 - 38274669
Alignment:
| Q |
170 |
tctataggctatattgtattgatgatatatgcatatatcatttcagctacgtcccaaagctgcacagtttcaaaagaaagggtgtgac |
257 |
Q |
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||||||||||||||| |||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
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| T |
38274754 |
tctataggctatattttattgatgatat--gcatatatcatttcaggtacatcccaaagctgcacagtttcaaaagaaagggtgtgac |
38274669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 256 - 341
Target Start/End: Original strand, 12835891 - 12835976
Alignment:
| Q |
256 |
acttcgcatgtaaccttgaattgttcttttaccaagtgtgtggctgctctcgatgaactggaagacatttcagatgatgcctatgg |
341 |
Q |
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||||||| |||||| | | |||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||| |
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| T |
12835891 |
acttcgcgtgtaacttcggattgttctcttaccaagtgtgtggctgctctcgatggactagaagacatttcagatgatacctatgg |
12835976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 182 - 257
Target Start/End: Original strand, 12835475 - 12835548
Alignment:
| Q |
182 |
attgtattgatgatatatgcatatatcatttcagctacgtcccaaagctgcacagtttcaaaagaaagggtgtgac |
257 |
Q |
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|||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||| ||| |||||||| |
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| T |
12835475 |
attgtattgatgatat--gcatatatcatttcaggtacatcccaaagctgcacagtttcaaaataaatggtgtgac |
12835548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 256 - 327
Target Start/End: Complemental strand, 38274534 - 38274463
Alignment:
| Q |
256 |
acttcgcatgtaaccttgaattgttcttttaccaagtgtgtggctgctctcgatgaactggaagacatttca |
327 |
Q |
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||||||| |||||| ||| |||||||| |||||||||||||||||||||| |||||||| ||||||||||| |
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| T |
38274534 |
acttcgcgtgtaactttggattgttctcttaccaagtgtgtggctgctcttgatgaactataagacatttca |
38274463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 256 - 341
Target Start/End: Complemental strand, 10626349 - 10626264
Alignment:
| Q |
256 |
acttcgcatgtaaccttgaattgttcttttaccaagtgtgtggctgctctcgatgaactggaagacatttcagatgatgcctatgg |
341 |
Q |
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||||||| |||||| ||| |||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||| |
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| T |
10626349 |
acttcgcgtgtaactttggattgttctcttaccaagtgtgtggctgctctcgatggactagaagacatttcagatgatacctatgg |
10626264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 256 - 340
Target Start/End: Complemental strand, 21117175 - 21117091
Alignment:
| Q |
256 |
acttcgcatgtaaccttgaattgttcttttaccaagtgtgtggctgctctcgatgaactggaagacatttcagatgatgcctatg |
340 |
Q |
| |
|
||||||| |||||| ||| |||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||| |
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| T |
21117175 |
acttcgcgtgtaactttggattgttctcttaccaagtgtgtggctgctctcgatggactagaagacatttcagatgatacctatg |
21117091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 196 - 256
Target Start/End: Complemental strand, 10626728 - 10626668
Alignment:
| Q |
196 |
atatgcatatatcatttcagctacgtcccaaagctgcacagtttcaaaagaaagggtgtga |
256 |
Q |
| |
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|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
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| T |
10626728 |
atatgcatatatcatttcaggtacatcccaaagctgcacagtttcaaaagaaagggtgtga |
10626668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 196 - 256
Target Start/End: Complemental strand, 21117579 - 21117519
Alignment:
| Q |
196 |
atatgcatatatcatttcagctacgtcccaaagctgcacagtttcaaaagaaagggtgtga |
256 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
21117579 |
atatgcatatatcatttcaggtacatcccaaagctgcacagtttcaaaagaaagggtgtga |
21117519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 256 - 341
Target Start/End: Complemental strand, 1240255 - 1240170
Alignment:
| Q |
256 |
acttcgcatgtaaccttgaattgttcttttaccaagtgtgtggctgctctcgatgaactggaagacatttcagatgatgcctatgg |
341 |
Q |
| |
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||||||| |||||| | | |||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||| |
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| T |
1240255 |
acttcgcgtgtaacttcggattgttctcttaccaagtgtgtggctgctctcgatggactagaagacatttcagatgatacctatgg |
1240170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 196 - 257
Target Start/End: Complemental strand, 1240659 - 1240598
Alignment:
| Q |
196 |
atatgcatatatcatttcagctacgtcccaaagctgcacagtttcaaaagaaagggtgtgac |
257 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1240659 |
atatgcatatatcatttcaggtacatcccaaagctgcacagtttcaaaagaaagggtgtgac |
1240598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 35487243 - 35487201
Alignment:
| Q |
19 |
aataattctttcacgctcaatataacgtttcaagaatcttgtt |
61 |
Q |
| |
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|||||||||||||| ||||| |||| ||||||||||||||||| |
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| T |
35487243 |
aataattctttcacactcaagataaggtttcaagaatcttgtt |
35487201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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