View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2937_low_7 (Length: 281)

Name: NF2937_low_7
Description: NF2937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2937_low_7
NF2937_low_7
[»] chr7 (5 HSPs)
chr7 (135-262)||(32855826-32855953)
chr7 (200-262)||(32850427-32850489)
chr7 (16-101)||(32855987-32856072)
chr7 (136-177)||(32850520-32850561)
chr7 (68-101)||(32850592-32850625)


Alignment Details
Target: chr7 (Bit Score: 128; Significance: 3e-66; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 135 - 262
Target Start/End: Complemental strand, 32855953 - 32855826
Alignment:
Q  135 agggaaaaataaaactacaagcgtgggagatgtggtcttgcactgcacacattcctgctttcctgttgttgcatttagtaacctttggccaccccaacag 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32855953 agggaaaaataaaactacaagcgtgggagatgtggtcttgcactgcacacattcctgctttcctgttgttgcatttagtaacctttggccaccccaacag 32855854  T
Q  235 gtagcacttgatattttcagctggaaag 262  Q
    ||||||||||||||||||||||||||||    
T  32855853 gtagcacttgatattttcagctggaaag 32855826  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 200 - 262
Target Start/End: Complemental strand, 32850489 - 32850427
Alignment:
Q  200 ttgttgcatttagtaacctttggccaccccaacaggtagcacttgatattttcagctggaaag 262  Q
    |||||||| |||||||| ||| || |||||||||||||||| ||| |||||||||||||||||    
T  32850489 ttgttgcacttagtaacttttagcaaccccaacaggtagcagttggtattttcagctggaaag 32850427  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 32856072 - 32855987
Alignment:
Q  16 cacagagtgcagaacagttacagtgctttgaagatannnnnnnnnnnnnnnncttccagctggagatattatcttagttcaaaggg 101  Q
    ||||||||||||||||||||||||||||||||||||                ||||||||||||||||||||||||||||||||||    
T  32856072 cacagagtgcagaacagttacagtgctttgaagatattttctttttgtttttcttccagctggagatattatcttagttcaaaggg 32855987  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 177
Target Start/End: Complemental strand, 32850561 - 32850520
Alignment:
Q  136 gggaaaaataaaactacaagcgtgggagatgtggtcttgcac 177  Q
    ||||||||||||||||||| ||||||||||| ||||||||||    
T  32850561 gggaaaaataaaactacaatcgtgggagatggggtcttgcac 32850520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 101
Target Start/End: Complemental strand, 32850625 - 32850592
Alignment:
Q  68 cttccagctggagatattatcttagttcaaaggg 101  Q
    ||||||||||||||||||||||||||||||||||    
T  32850625 cttccagctggagatattatcttagttcaaaggg 32850592  T

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