View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2938_high_1 (Length: 530)
Name: NF2938_high_1
Description: NF2938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2938_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 23 - 258
Target Start/End: Original strand, 10102307 - 10102543
Alignment:
| Q |
23 |
taatactgaatcatatagatatcctttt-ttcttaggctctttgcattgttccattttagtctagtatttacatgacattcatttctcttttgacatgta |
121 |
Q |
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| T |
10102307 |
taatactgaatcatatagatatcctttttttcttaggctctttgcattgttcctttttagtctagtatttacatgacattcatttctcttttgacatgta |
10102406 |
T |
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| Q |
122 |
ggtttatgattttgtgaaattgaaaaatatttactatgctggaagccatggaatggacatatcaacttcactggggtcttccaagtatcatgataagaat |
221 |
Q |
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| T |
10102407 |
ggtttatgattttgtgaaattgaaaaatatttactatgctggaagccatggaatggacatatcaacttcactggggtcttccaagtatcatgataagaat |
10102506 |
T |
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| Q |
222 |
catcaaacaaagggtgttgatgaaaaggtttacaagc |
258 |
Q |
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| T |
10102507 |
catcaaacaaagggtgttgatgaaaaggtttacaagc |
10102543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 383 - 520
Target Start/End: Original strand, 10102969 - 10103106
Alignment:
| Q |
383 |
ttaacgtctcataatgtattttagggtaatgaagttgtactttatcatccagcagaagaatttttaccaactatccaagaggtaatattattcattaatt |
482 |
Q |
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| T |
10102969 |
ttaacgtctcataatgtattttagggtaatgaagttgtactttatcatccagcagaagaatttttaccaacaatccaagaggtaatattattcattaatt |
10103068 |
T |
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| Q |
483 |
tgttcttaaaatgaacaaacttctttatgtaccctttg |
520 |
Q |
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| T |
10103069 |
tgttcttaaaatgaacaaacttctttatgtaccctttg |
10103106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 314 - 379
Target Start/End: Original strand, 10102598 - 10102663
Alignment:
| Q |
314 |
atgaaattcacatttctcttattatcagaacaatcttgtttgagacatacataacaataaggataa |
379 |
Q |
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| T |
10102598 |
atgaaattcacatttctcttattatcataacaatcttgtttgagacatacataacaataagaataa |
10102663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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