View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2938_low_1 (Length: 996)

Name: NF2938_low_1
Description: NF2938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2938_low_1
NF2938_low_1
[»] chr8 (5 HSPs)
chr8 (310-979)||(29240451-29241120)
chr8 (326-963)||(16828003-16828651)
chr8 (60-310)||(41481548-41481815)
chr8 (60-313)||(36167547-36167816)
chr8 (116-305)||(18951129-18951326)
[»] chr5 (5 HSPs)
chr5 (1-310)||(33807906-33808213)
chr5 (1-310)||(33811560-33811867)
chr5 (1-310)||(33816478-33816785)
chr5 (132-227)||(16698504-16698601)
chr5 (132-227)||(22763905-22764002)
[»] chr6 (4 HSPs)
chr6 (11-310)||(31151926-31152226)
chr6 (113-310)||(22981504-22981710)
chr6 (113-310)||(23806698-23806904)
chr6 (51-234)||(1111378-1111564)
[»] chr3 (11 HSPs)
chr3 (1-310)||(50603094-50603403)
chr3 (60-311)||(54967209-54967477)
chr3 (113-312)||(44782522-44782733)
chr3 (60-227)||(39298736-39298908)
chr3 (113-229)||(18556392-18556511)
chr3 (54-158)||(31725346-31725448)
chr3 (113-298)||(54979854-54980051)
chr3 (798-850)||(846375-846427)
chr3 (132-231)||(17645800-17645897)
chr3 (559-616)||(846142-846199)
chr3 (258-310)||(17645928-17645981)
[»] chr1 (2 HSPs)
chr1 (95-310)||(29706854-29707069)
chr1 (135-227)||(27642132-27642225)
[»] scaffold0045 (1 HSPs)
scaffold0045 (60-292)||(26516-26752)
[»] chr7 (10 HSPs)
chr7 (113-310)||(4842648-4842857)
chr7 (60-311)||(25857130-25857395)
chr7 (60-310)||(4835575-4835840)
chr7 (113-229)||(13465046-13465165)
chr7 (50-219)||(8252686-8252853)
chr7 (132-227)||(27341025-27341120)
chr7 (115-236)||(17845847-17845969)
chr7 (113-227)||(24379370-24379487)
chr7 (260-310)||(24380113-24380163)
chr7 (161-227)||(38994151-38994218)
[»] scaffold0479 (1 HSPs)
scaffold0479 (113-311)||(2727-2937)
[»] chr4 (3 HSPs)
chr4 (60-310)||(9757212-9757480)
chr4 (132-229)||(37286972-37287069)
chr4 (115-227)||(42682924-42683038)
[»] chr2 (2 HSPs)
chr2 (132-225)||(37037942-37038035)
chr2 (258-292)||(37038074-37038108)
[»] scaffold0003 (1 HSPs)
scaffold0003 (132-310)||(342217-342404)


Alignment Details
Target: chr8 (Bit Score: 561; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 310 - 979
Target Start/End: Complemental strand, 29241120 - 29240451
Alignment:
Q  310 atattcgtctacatttagaactgacaggatgagtctttggagcagctacgaaatcacttttttattagaaccccacccatctcttcttcgtttgccgtct 409  Q
    |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  29241120 atattcgtctacgtttagaactgacaggatgagtctttggatcagctacgaaatcacttttttattagaaccccacccatctcttcttcgtttgtcgtct 29241021  T
Q  410 gcttcctcctctgaatttggctcgctagcttgccctaaattgctggataaagaggcactt-----cggatttctgcattggttgtaacacaaaatatgca 504  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||    
T  29241020 gcttcctcctctgaattaggctcgctagcttgccctaaattgctggataaagaggcacttaaacccggatttctgcattggttgtaacacaaaatatgca 29240921  T
Q  505 aaagcatgaacagggaaggccaaattgatcgcacaaacaagagtaagtaaaaacgaggacaagaacttacagatctaatgttccactttgcaaatcaagc 604  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29240920 aaagtatgaacagggaaggccaaattgatcgcacaaacaagagtaagtaaaaacgaggacaagaacttacagatctaatgttccactttgcaaatcaagc 29240821  T
Q  605 aaaaaatcctttactagttgtcgagcactttcattcgcctaaaagatatgaagaaataaaaattagaatccacctatctatctatctagtaagaacccct 704  Q
    |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||    
T  29240820 aaaaaatcctttaccagctgtcgagcactttcattcgcctaaaagatatgaagaaataaaaattagaatccacctatcta----tctagtaagaacccct 29240725  T
Q  705 cacaaaaataaaaatgatctattaagattagcaggacaatacgttatgcttttcaatagaactctaaaattgaaatnnnnnnnngtaataattacctttc 804  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||    
T  29240724 cacaaaaataaaaatgatctattaagattagcaggacaatacgttatgcttttcaatagaactctaaaattgaaat-aaaaaaagtaataattacctttc 29240626  T
Q  805 aatgactgtaagcaaatttgttggatgatatttatctttcaacctatataaaaagtaaaacgagaaacaaaattcaacatcagattgtgtggacttacaa 904  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||||||||||||||| | |||    
T  29240625 aatgactgtaagcaaatttgttggatgatatttatctttcaacctatataaaaagcaaaacgagaaacggaattcaacatcagattgtgtggacatccaa 29240526  T
Q  905 aaatacggcaattcatagtttgacagtaaacatttaaagattgaaaactacagattgttagagaatagagaatat 979  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29240525 aaatacggcaattcatagtttgacagtaaacatttaaagattgaaaactacagattgttagagaatagagaatat 29240451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 326 - 963
Target Start/End: Complemental strand, 16828651 - 16828003
Alignment:
Q  326 agaactgacaggatgagtctttggagcagctacgaaatcactttttt-attagaaccccacccatctcttcttcgtttgccgtctgcttcctcctctgaa 424  Q
    ||||||||||||||||| |||||||||||||  |||||||||||||| |||||||||||||||||||||||||| || | | || |||||||||||||||    
T  16828651 agaactgacaggatgagcctttggagcagctgagaaatcactttttttattagaaccccacccatctcttcttctttggtcttccgcttcctcctctgaa 16828552  T
Q  425 tttggctcgctagcttgccctaaattgctggataaagaggcactt-----cggatttctgcattggttgtaacacaaaatatgcaaaagcatgaacaggg 519  Q
    ||||||||||||||||||||| | |||||||||||||||||||||     ||||||||||||||||||||||||||||||||||| ||| ||||||| ||    
T  16828551 tttggctcgctagcttgccctgatttgctggataaagaggcacttaaacccggatttctgcattggttgtaacacaaaatatgcataagtatgaacaagg 16828452  T
Q  520 aaggccaaattga---tcgcacaaacaagagtaagtaaaaacgaggacaagaacttacagatctaatgttccactttgcaaatcaagcaaaaaatccttt 616  Q
    ||||||| |||||     ||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  16828451 aaggccagattgagagctgcacaaacaagcgtaagtaaaaaagaggacaagaacttacggatctaatgttccactttgcaaatcaagcaaaaaatccttt 16828352  T
Q  617 actagttgtcgagcactttcatt-cgcctaaaagatatgaagaaataaaaattagaatccacctatctatctatctagtaagaacccctcacaaaaataa 715  Q
     | || ||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||    |||| |||| |||||| ||||| || ||||||||    
T  16828351 gccagctgtcgagcactttcattcctcctaaaatatatgaagaaataaaaattagaatccac----ctatttatcgagtaagcaccccccataaaaataa 16828256  T
Q  716 aaatgatctattaagattagcaggacaatacgttatgcttttcaatagaactctaaaattg-----aaatnnnnnnnngtaataattacctttcaatgac 810  Q
    |||||||| |||||||||| |||||||| |||||||| |||||||||||||| ||||||||     |||          ||| |||||||||||||||||    
T  16828255 aaatgatccattaagattaacaggacaacacgttatgtttttcaatagaactgtaaaattgatataaaaaaaataataataagaattacctttcaatgac 16828156  T
Q  811 tgtaagcaaatttgttggatgatatttatctttcaacctatataaaaagtaaaacgagaaacaaaattcaacatcagattgtgtggacttacaaaaatac 910  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   || ||||||||||||||||||||||||||||||||     
T  16828155 tgtaagcaaatttgttggatgatatttatctttcaacctatataaaaagtaaaacgagaaagggaaatcaacatcagattgtgtggacttacaaaaatat 16828056  T
Q  911 ggcaattcatagtttgacagtaaacatttaaagattgaaaactacagattgtt 963  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||| ||||    
T  16828055 ggcaattcatagttttacaggaaacatttaaagattgaaaactacagactgtt 16828003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 60 - 310
Target Start/End: Original strand, 41481548 - 41481815
Alignment:
Q  60 atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata 153  Q
    |||||||||||||||||||||||  |   |||||||||||| | |||     || || ||||||| ||||||||| | ||||||||||||||| ||||||    
T  41481548 atagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgtattcccattatcattata 41481647  T
Q  154 gtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaaggttttccacgctaaaattttgttgtgtgtc----------- 239  Q
    ||||| | ||||||||||  | ||||||||||||||||  |||| |||| ||||||||||||||||||||||||||| | || ||||||               
T  41481648 gtggaagttttaagaggcccaagggtcccgtggttttttccctttctcatattgagaaggttttccacgctaaaattctctt-tgtgtcattacgtttat 41481746  T
Q  240 attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaaca 310  Q
    |||| |||||||||||  |||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  41481747 atttcacgtttccgct--agtgtctattttgagttcacggaggagggaaattatgcaggcatttcccaaca 41481815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 60 - 313
Target Start/End: Original strand, 36167547 - 36167816
Alignment:
Q  60 atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata 153  Q
    |||||||||||||||||||||||  |   |||||||||||| | |||     || || ||||||| ||||||||| | ||||||||||||||| ||||||    
T  36167547 atagtgagccaatttgtgagagtgttccttacaaattgagagatatattatagtgagatccacctaagggtgaagttgttgtattcccattatcattata 36167646  T
Q  154 gtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaaggttttccacgctaaaattttgttgtgtgtcatt-------- 242  Q
    ||||| | ||||||||||  | |||||| |||||||||  |||| |||| ||||||||||||||||||||||||||| | || |||||||||            
T  36167647 gtggaagttttaagaggcccaagggtcc-gtggttttttccctttctcatattgagaaggttttccacgctaaaattctctt-tgtgtcattacgtttat 36167744  T
Q  243 ---ttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaacatat 313  Q
       | ||||||||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  36167745 atttcacgtttccgcta--gtgcctattttgagttcacggaggagggaaattatgcaggcatttcccaacatat 36167816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 116 - 305
Target Start/End: Complemental strand, 18951326 - 18951129
Alignment:
Q  116 acctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaaggt 211  Q
    |||| ||||||||| | ||||||||||||||| ||||||||||| | ||||||| ||  |  |||| ||||||||||  |||| ||||||||||||||||    
T  18951326 acctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaagcccaaaggtctcgtggttttttccctttctcacattgagaaggt 18951227  T
Q  212 tttccacgctaaaattttgttgtgtgtc------attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcc 305  Q
    |||||| ||||||||| |||    |  |      |||| | |||||||||  |||||||||||||||||||||||||||| |||||| ||||||||||||    
T  18951226 tttccatgctaaaattctgtgtcattacgcttatatttcatgtttccgct--agtgcctattttgagttcacggaggaggcaaattatgcaggcatttcc 18951129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 33807906 - 33808213
Alignment:
Q  1 cactcacatagagttgagagaaaaatagagagttcctcataagagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33807906 cactcacatagagttgagagaaaaatagagagttcctcataagagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgaga 33808005  T
Q  101 tacatagttaggtccacctgagggtgaagatttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcac 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  33808006 tacatagttaggtccacctgagggtgaagatttgtattcccattattattatagtggagatttaagaggcctacgggtcccgtggtttttccttactcac 33808105  T
Q  201 attgagaaggttttccacgctaaaattttgttgtgtgtcattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggca 300  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  33808106 attgagaaggttttccacgctaaaattttgt--tgtgtcattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattatgcaggca 33808203  T
Q  301 tttcccaaca 310  Q
    ||||||||||    
T  33808204 tttcccaaca 33808213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 33811560 - 33811867
Alignment:
Q  1 cactcacatagagttgagagaaaaatagagagttcctcataagagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33811560 cactcacatagagttgagagaaaaatagagagttcctcataagagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgaga 33811659  T
Q  101 tacatagttaggtccacctgagggtgaagatttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcac 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  33811660 tacatagttaggtccacctgagggtgaagatttgtattcccattattattatagtggagatttaagaggcctacgggtcccgtggtttttccttactcac 33811759  T
Q  201 attgagaaggttttccacgctaaaattttgttgtgtgtcattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggca 300  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  33811760 attgagaaggttttccacgctaaaattttgt--tgtgtcattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattatgcaggca 33811857  T
Q  301 tttcccaaca 310  Q
    ||||||||||    
T  33811858 tttcccaaca 33811867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 33816478 - 33816785
Alignment:
Q  1 cactcacatagagttgagagaaaaatagagagttcctcataagagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33816478 cactcacatagagttgagagaaaaatagagagttcctcataagagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgaga 33816577  T
Q  101 tacatagttaggtccacctgagggtgaagatttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcac 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  33816578 tacatagttaggtccacctgagggtgaagatttgtattcccattattattatagtggagatttaagaggcctacgggtcccgtggtttttccttactcac 33816677  T
Q  201 attgagaaggttttccacgctaaaattttgttgtgtgtcattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggca 300  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  33816678 attgagaaggttttccacgctaaaattttgt--tgtgtcattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattatgcaggca 33816775  T
Q  301 tttcccaaca 310  Q
    ||||||||||    
T  33816776 tttcccaaca 33816785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 227
Target Start/End: Original strand, 16698504 - 16698601
Alignment:
Q  132 ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttcc-ttactcacattgagaaggttttccacgctaaaatt 227  Q
    ||||||||||||||| ||||||||||| | |||||||||   | ||||||| |  ||||||| || ||||||||||||||| ||||||| ||||||||    
T  16698504 ttgtattcccattatcattatagtggaagttttaagaggtccaagggtcccataatttttccctttctcacattgagaaggatttccacactaaaatt 16698601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 227
Target Start/End: Complemental strand, 22764002 - 22763905
Alignment:
Q  132 ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttcc-ttactcacattgagaaggttttccacgctaaaatt 227  Q
    ||||||||||||||| |||||||   | | ||||||||||  |  ||||||||||||||||| || |||| ||||||||||||||||| |||||||||    
T  22764002 ttgtattcccattatcattatagcataagttttaagaggcccaatggtcccgtggtttttccctttctcatattgagaaggttttccatgctaaaatt 22763905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 233; Significance: 1e-128; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 11 - 310
Target Start/End: Complemental strand, 31152226 - 31151926
Alignment:
Q  11 gagttgagagaaaaatagagagttcctcataagagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagtta 110  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||| ||||||    
T  31152226 gagttgagagaaaaatagagagttcctcgtaagagtgtgagagaaaaatatagtaagccaatttgtgagagttgtatctataaatttagatacgtagtta 31152127  T
Q  111 ggtccacctgagggtgaagatttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggt-ttttccttactcacattgagaag 209  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||| ||||||||||||||||||    
T  31152126 ggtccatctgagggtgaagatttgtattcccattattattatagtggagatttaagaggcctacggatcccgtggtttttttcttactcacattgagaag 31152027  T
Q  210 gttttccacgctaaaattttgttgtgtgtcattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaac 309  Q
    |||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||| ||||||||||||||||    
T  31152026 gttttccacattaaaattttgttgtgtgtcattttatgtttccgctaaagtgcctattttgagttcagagaggagggaaattatgcaggcatttcccaac 31151927  T
Q  310 a 310  Q
    |    
T  31151926 a 31151926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 113 - 310
Target Start/End: Original strand, 22981504 - 22981710
Alignment:
Q  113 tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttcc-ttactcacattgagaag 209  Q
    ||||||| ||||||||| | ||||||||||||||| ||||||||||| | ||||||||||  | |||||||||||||||||| || ||||||||||||||    
T  22981504 tccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggcccaagggtcccgtggtttttccctttctcacattgagaag 22981603  T
Q  210 gttttccacgctaaaattttgttgtgt-------gtcatttt--acgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggca 300  Q
    |||||||||||||||||| |  |||||        | |||||  |||||||||||  ||||||| ||||||||||||||||| ||||||||| |||| ||    
T  22981604 gttttccacgctaaaattct-ctgtgtcattacgcttatttttcacgtttccgct--agtgcctgttttgagttcacggaggggggaaattatgcagtca 22981700  T
Q  301 tttcccaaca 310  Q
    ||||||||||    
T  22981701 tttcccaaca 22981710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 113 - 310
Target Start/End: Complemental strand, 23806904 - 23806698
Alignment:
Q  113 tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttcc-ttactcacattgagaag 209  Q
    ||||||| ||||||||| | ||||||||||||||| ||||||||||| | ||||||||||  | |||||||||||||||||| || ||||||||||||||    
T  23806904 tccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggcccaagggtcccgtggtttttccctttctcacattgagaag 23806805  T
Q  210 gttttccacgctaaaattttgttgtgt-------gtcatttt--acgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggca 300  Q
    |||||||||||||||||| |  |||||        | |||||  |||||||||||  ||||||| ||||||||||||||||| ||||||||| |||| ||    
T  23806804 gttttccacgctaaaattct-ctgtgtcattacgcttatttttcacgtttccgct--agtgcctgttttgagttcacggaggggggaaattatgcagtca 23806708  T
Q  301 tttcccaaca 310  Q
    ||||||||||    
T  23806707 tttcccaaca 23806698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 51 - 234
Target Start/End: Complemental strand, 1111564 - 1111378
Alignment:
Q  51 gagaaaaatatagtgagccaatttgtgagagttgtatcta--caaattgagatacatagttaggtccacctgagggtgaagatttgtattcccattatta 148  Q
    ||||||||||||  || |||||||||||||  | ||||||  |||||||||||||||||||||||  || | ||||||||  ||||||||| ||||||||    
T  1111564 gagaaaaatataaggaaccaatttgtgagaaatatatctatacaaattgagatacatagttaggtttacgtaagggtgaaagtttgtattctcattatta 1111465  T
Q  149 ttatagtgg-agatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgt 234  Q
    ||||  | | ||||||||||| |||| | ||||| || |||||||||| | ||||| ||||||||||| || |||||||||||||||    
T  1111464 ttattatagtagatttaagagacttatgagtcccatgatttttccttatttacattcagaaggttttctacactaaaattttgttgt 1111378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 50603094 - 50603403
Alignment:
Q  1 cactcacatagagttgagagaaaaatagagagttcctcataagagtgtgagagaaaaatatagtgagccaatttgt--gagagttgtatctacaaattga 98  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||  |||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  50603094 cactcacacagagttgagagaaaaatagaaagttcctcataagagtg--agagaaaaatatagtgagccaatttgtatgagagttgtatctacaaattga 50603191  T
Q  99 gatacatagttaggtccacctgagggtgaagatttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactc 198  Q
    |||| ||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||    
T  50603192 gatatatagttaggtccatctaaaggtgaagatttgtattcccattattattatagtggagatttaagaggcctacgggttccgtggttttttcttactc 50603291  T
Q  199 acattgagaaggttttccacgctaaaattttgttgtgtgtcattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcagg 298  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||   | ||    
T  50603292 acattgagaaggttttccacgctaaaattttattgtgtgtcattttacgttttcgctaaagtgtctattttgagttcacggaggagagaaattgtactgg 50603391  T
Q  299 catttcccaaca 310  Q
    ||||||||||||    
T  50603392 catttcccaaca 50603403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 60 - 311
Target Start/End: Complemental strand, 54967477 - 54967209
Alignment:
Q  60 atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata 153  Q
    |||||||||||||||||||||||  |   |||||||||||| | |||     || || ||||||| ||||||||| | ||||||||||||||| ||||||    
T  54967477 atagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgtattcccattatcattata 54967378  T
Q  154 gtggagattt--aagaggcttacgggtcccgtggtttttcc-ttactcacattgagaaggttttccacgctaaaattttgttgtgtgtc----------- 239  Q
    |||||  |||  |||||||  | |||||||||||||||||| || |||| ||||||||||||||||||||||||||| | || ||||||               
T  54967377 gtggaagtttttaagaggcccaagggtcccgtggtttttccctttctcatattgagaaggttttccacgctaaaattctctt-tgtgtcattacgctttt 54967279  T
Q  240 attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaacat 311  Q
    |||| |||||||||||  ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  54967278 atttcacgtttccgct--agtgcctattttgagttgacggaggagggaaattatgcaggcatttcccaacat 54967209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 113 - 312
Target Start/End: Complemental strand, 44782733 - 44782522
Alignment:
Q  113 tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaa 208  Q
    ||||||| ||||||||| | ||||||||||||||| ||||||||||| | |||||||||   | ||||||||||||||||  |||| |||| ||||||||    
T  44782733 tccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggtccaagggtcccgtggttttttccctttctcatattgagaa 44782634  T
Q  209 ggttttccacgctaaaattttgttgtgtgtc-----------attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcag 297  Q
    ||||||||||||||||||| | || ||||||           |||| |||||||||||  |||| |||||||||||||||||||||||||||||| ||||    
T  44782633 ggttttccacgctaaaattctctt-tgtgtcattacgtttatatttcacgtttccgct--agtgtctattttgagttcacggaggagggaaattatgcag 44782537  T
Q  298 gcatttcccaacata 312  Q
    |||||||||||||||    
T  44782536 gcatttcccaacata 44782522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 60 - 227
Target Start/End: Original strand, 39298736 - 39298908
Alignment:
Q  60 atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata 153  Q
    ||||||||||||||||||||||| ||   |||||||||||| | |||     ||||| ||||||| ||||||||| | |||||||||| |||| ||||||    
T  39298736 atagtgagccaatttgtgagagt-gtccttacaaattgagagatatattgtagttagatccacctaagggtgaagttgttgtattccctttatcattata 39298834  T
Q  154 gtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaatt 227  Q
    |||||  ||||||||||  | |||||||||| |||||||||  |||||||||||||||||| ||| ||||||||    
T  39298835 gtggaagtttaagaggcacaagggtcccgtgatttttccttcatcacattgagaaggtttttcacactaaaatt 39298908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 113 - 229
Target Start/End: Complemental strand, 18556511 - 18556392
Alignment:
Q  113 tccacctgagggtgaagat-ttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaag 209  Q
    ||||||| ||||||||| | |||||||| |||| | |||||||||||  |||||||||||   ||||||||||||||||  |||| |||| |||||||||    
T  18556511 tccacctaagggtgaagttgttgtattctcattgtcattatagtggaagtttaagaggctcgagggtcccgtggttttttgcctttctcagattgagaag 18556412  T
Q  210 gttttccacgctaaaatttt 229  Q
    ||||||||||||||||||||    
T  18556411 gttttccacgctaaaatttt 18556392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 54 - 158
Target Start/End: Complemental strand, 31725448 - 31725346
Alignment:
Q  54 aaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgtattcccattattattata 153  Q
    ||||||||||| |  |||||||||||| ||||  |||||||||||||||||| || |||||||||| || |||||||||||||||| ||||||| |||||    
T  31725448 aaaaatatagttaatcaatttgtgagaattgt--ctacaaattgagatacatcgtaaggtccacctaagtgtgaagatttgtattctcattattgttata 31725351  T
Q  154 gtgga 158  Q
     ||||    
T  31725350 ttgga 31725346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 113 - 298
Target Start/End: Complemental strand, 54980051 - 54979854
Alignment:
Q  113 tccacctgagggtgaagat-ttgtattcccattattattatagtggagattt--aagaggcttacgggtcccgtggtttttcc-ttactcacattgagaa 208  Q
    ||||||| ||||||||| | ||||||||||||||| |||||||||||  |||  |||||||  | |||||||||||||||||| || |||| ||||||||    
T  54980051 tccacctaagggtgaagttgttgtattcccattatcattatagtggaagtttttaagaggcccaagggtcccgtggtttttccctttctcatattgagaa 54979952  T
Q  209 ggttttccacgctaaaattttgttgtgtgtc-----------attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcag 297  Q
    ||||||||| ||||||||| | || ||||||           |||| |||||||||||  ||||| ||||||||||| ||||||||||||||||| ||||    
T  54979951 ggttttccatgctaaaattctctt-tgtgtcattacacttttatttcacgtttccgct--agtgcttattttgagttgacggaggagggaaattatgcag 54979855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 798 - 850
Target Start/End: Original strand, 846375 - 846427
Alignment:
Q  798 acctttcaatgactgtaagcaaatttgttggatgatatttatctttcaaccta 850  Q
    |||||||||| |||||||| ||||||||||||||||| |||||||||||||||    
T  846375 acctttcaattactgtaagtaaatttgttggatgatacttatctttcaaccta 846427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 231
Target Start/End: Original strand, 17645800 - 17645897
Alignment:
Q  132 ttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgt 231  Q
    |||||||  |||||| |||||||||||  ||||||| ||| | | ||||||||||||||  ||  | | |||||||||||||||||||||||||||||||    
T  17645800 ttgtattgtcattatcattatagtggaagtttaagacgctcaagagtcccgtggttttttttt--ttatattgagaaggttttccacgctaaaattttgt 17645897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 559 - 616
Target Start/End: Original strand, 846142 - 846199
Alignment:
Q  559 gaggacaagaacttacagatctaatgttccactttgcaaatcaagcaaaaaatccttt 616  Q
    |||||||| ||| ||||  |||| ||||||||||||||||||||||||||| ||||||    
T  846142 gaggacaaaaacatacatgtctagtgttccactttgcaaatcaagcaaaaactccttt 846199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 310
Target Start/End: Original strand, 17645928 - 17645981
Alignment:
Q  258 agtgcctattttgagttcacggaggagggaaattaagcagg-catttcccaaca 310  Q
    |||| |||||||||||||||||| ||||||||||| | ||| ||||||||||||    
T  17645928 agtgtctattttgagttcacggatgagggaaattatggaggtcatttcccaaca 17645981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 120; Significance: 7e-61; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 120; E-Value: 7e-61
Query Start/End: Original strand, 95 - 310
Target Start/End: Complemental strand, 29707069 - 29706854
Alignment:
Q  95 ttgagatacatagttaggtccacctgagggtgaagatttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttcctt 194  Q
    |||||||||||||||||||||||| |||||||||||||| |  | ||||||||||||||||||||||||||||||  || | |||||||| || ||||||    
T  29707069 ttgagatacatagttaggtccacccgagggtgaagattttttattccattattattatagtggagatttaagaggtctatgagtcccgtgattgttcctt 29706970  T
Q  195 actcacattgagaaggttttccacgctaaaattttgttgtgtgtcattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaag 294  Q
    ||||| |||||||||||||||| | ||||||||||||||||||||||||||| |||  |||||||||| |||||| |||||||||| ||| ||||||| |    
T  29706969 actcatattgagaaggttttcctcactaaaattttgttgtgtgtcattttacatttttgctaaagtgcatattttaagttcacggatgagagaaattatg 29706870  T
Q  295 caggcatttcccaaca 310  Q
     |||||||| ||||||    
T  29706869 gaggcattttccaaca 29706854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 227
Target Start/End: Original strand, 27642132 - 27642225
Alignment:
Q  135 tattcccattattattatagtggagatttaagaggcttacgggtcccgtggttttt-ccttactcacattgagaaggttttccacgctaaaatt 227  Q
    ||||||||||||||||||||||||  |||||||| |    ||  |||||| ||||| |||| ||||||||||||||||||| ||||| ||||||    
T  27642132 tattcccattattattatagtggaagtttaagagacccgaggaccccgtgattttttcctttctcacattgagaaggttttacacgccaaaatt 27642225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 84; Significance: 2e-39; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 60 - 292
Target Start/End: Complemental strand, 26752 - 26516
Alignment:
Q  60 atagtgagccaatttgtgagagttgtatctacaaattgagataca-----tagttaggtccacctgagggtgaag-atttgtattcccattattattata 153  Q
    |||||||||||||||||||||||  |   |||||||||||| | |     |||| || ||||||| |||||| || | |||||||| | |||| |||| |    
T  26752 atagtgagccaatttgtgagagtgttccttacaaattgagagataaattgtagtgagatccacctaagggtggagtagttgtattctcgttatcattaga 26653  T
Q  154 gtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgtgtgtcattttacgtttccg 253  Q
    |||||  ||||||||||  | ||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||||  |||| ||||||||||| ||    
T  26652 gtggaagtttaagaggcccaagggtcccgtagtttttccttactcacattgaaaaggttttccaccctaaaattttgtt--gtgttattttacgttttcg 26555  T
Q  254 ctaaagtgcctattttgagttcacggaggagggaaatta 292  Q
    |||||||| |||||||||||||||| |||||||| ||||    
T  26554 ctaaagtgtctattttgagttcacgaaggagggagatta 26516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 8e-33; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 113 - 310
Target Start/End: Complemental strand, 4842857 - 4842648
Alignment:
Q  113 tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaa 208  Q
    ||||||| ||||||||| | ||||||||| ||||| ||||||||||| | ||||||||||  | |||||| |||||||||  |||| |||||||||||||    
T  4842857 tccacctaagggtgaagttgttgtattcctattatcattatagtggaagttttaagaggcccaagggtcctgtggttttttccctttctcacattgagaa 4842758  T
Q  209 ggttttccacgctaaaattttgttgtgtgtcatt-----------ttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcag 297  Q
    ||||||||||||||||||| | || |||||||||           | ||||||||||||  |||||||||||||||||||||||||||||||||| ||||    
T  4842757 ggttttccacgctaaaattctctt-tgtgtcattacacttatatttcacgtttccgcta--gtgcctattttgagttcacggaggagggaaattatgcag 4842661  T
Q  298 gcatttcccaaca 310  Q
    |||||||||||||    
T  4842660 gcatttcccaaca 4842648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 60 - 311
Target Start/End: Complemental strand, 25857395 - 25857130
Alignment:
Q  60 atagtgagccaatttgtgagagttgtatctacaaatt--gagatacat---agttaggtccacctgagggtgaagat-ttgtattcccattattattata 153  Q
    |||||||||||||||||||||||  |   ||||||||  |||||| ||   ||| || ||||||| | ||||||| | ||||||||||||||| ||||||    
T  25857395 atagtgagccaatttgtgagagtgttccttacaaattaagagatatattgtagtgagatccacctaaaggtgaagttgttgtattcccattatcattata 25857296  T
Q  154 gtgga-gatttaagaggcttacgggtcccgtggtttttcctta-ctcacattgagaaggttttccacgctaaaattttgttgtgtgtc-----------a 240  Q
    ||||| | ||||||||||  | ||||||||||||||||||||  ||||||||||||||||||||||||||||||||    | ||||||           |    
T  25857295 gtggaagttttaagaggcccaagggtcccgtggtttttccttttctcacattgagaaggttttccacgctaaaatt---ctctgtgtcattacgcttata 25857199  T
Q  241 ttttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaacat 311  Q
    ||| |||||||||||  |||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  25857198 tttcacgtttccgct--agtgcctattttaagttcacggaggagggaaattatgcaggcatttcccaacat 25857130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 60 - 310
Target Start/End: Complemental strand, 4835840 - 4835575
Alignment:
Q  60 atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata 153  Q
    |||||||||||||||||||||||  |   |||||||||||| | |||     || || ||||||| ||||||||| | ||| ||||||||||| ||||||    
T  4835840 atagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgcattcccattatcattata 4835741  T
Q  154 gtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaaggttttccacgctaaaattttgt-tgt------gtgt-catt 242  Q
    ||||| | ||||||||||  | ||||||||||||||||  |||| |||||||||||||||||||||||||||||||| | | |||      || |  |||    
T  4835740 gtggaagttttaagaggcccaagggtcccgtggttttttccctttctcacattgagaaggttttccacgctaaaattctctgtgtcattacgtttatatt 4835641  T
Q  243 ttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaaca 310  Q
    | |||||||| ||  ||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  4835640 tcacgtttccact--agtgcctattttgagttcatggaggagggaaattatgcaggcatttcccaaca 4835575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 113 - 229
Target Start/End: Complemental strand, 13465165 - 13465046
Alignment:
Q  113 tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttcc-ttactcacattgagaag 209  Q
    ||||||||||||||||  | ||||||||||||||| ||||||||||| | ||||||||||  | |||||| ||||||||||| || ||||||||||||||    
T  13465165 tccacctgagggtgaacttgttgtattcccattatcattatagtggatgttttaagaggcccaagggtcctgtggtttttccctttctcacattgagaag 13465066  T
Q  210 gttttccacgctaaaatttt 229  Q
    ||||||||||||||||||||    
T  13465065 gttttccacgctaaaatttt 13465046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 50 - 219
Target Start/End: Complemental strand, 8252853 - 8252686
Alignment:
Q  50 agagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagataca----tagttaggtccacctgagggtgaagatttgtattcccatta 145  Q
    |||||||||||||||||| |||||| ||| |||||||||||||||||||||||||    || ||| ||||| || | | ||||| ||||||||||| |||    
T  8252853 agagaaaaatatagtgagtcaatttatgatagttgtatctacaaattgagatacataattaattaagtccatctaaagatgaagctttgtattcccgtta 8252754  T
Q  146 ttattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacg 219  Q
    |||||| | ||  || ||||||| |||||| ||||||      | |||||||||| ||||||||||||||||||    
T  8252753 ttattacattgaggagttaagagacttacgagtcccg------taccttactcacgttgagaaggttttccacg 8252686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 132 - 227
Target Start/End: Complemental strand, 27341120 - 27341025
Alignment:
Q  132 ttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaatt 227  Q
    ||||||| ||||||| ||| |||| ||  |||||||||   | |||||||||||||||||||| || |||||||||||||||||||||||||||||    
T  27341120 ttgtatttccattatcattgtagtagaagtttaagaggtacaagggtcccgtggtttttcctttcttacattgagaaggttttccacgctaaaatt 27341025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 115 - 236
Target Start/End: Original strand, 17845847 - 17845969
Alignment:
Q  115 cacctgagggtgaagat-ttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttt 213  Q
    ||||| ||||||||| | ||||||| ||||||| |||||||||||  |||||||||   |  ||||| ||||||||||||| ||||||||| ||||||||    
T  17845847 cacctaagggtgaagttgttgtatttccattatcattatagtggaagtttaagaggtccaaaggtcctgtggtttttccttcctcacattgggaaggttt 17845946  T
Q  214 tccacgctaaaattttgttgtgt 236  Q
    ||||| |||||||| | ||||||    
T  17845947 tccactctaaaattctcttgtgt 17845969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 113 - 227
Target Start/End: Complemental strand, 24379487 - 24379370
Alignment:
Q  113 tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttcc-ttactcacattgagaag 209  Q
    ||||||| ||||||||| | ||||||||| ||||| ||||||||||| | ||||||||||  |  | ||||||||||||||| || ||||||||||||||    
T  24379487 tccacctaagggtgaagttgttgtattcctattatcattatagtggaagttttaagaggcccaaagatcccgtggtttttccctttctcacattgagaag 24379388  T
Q  210 gttttccacgctaaaatt 227  Q
    |||||||||| |||||||    
T  24379387 gttttccacgttaaaatt 24379370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 260 - 310
Target Start/End: Original strand, 24380113 - 24380163
Alignment:
Q  260 tgcctattttgagttcacggaggagggaaattaagcaggcatttcccaaca 310  Q
    |||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  24380113 tgcctattttgagttcacagaggagggaaattatgcaggcatttcccaaca 24380163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 227
Target Start/End: Complemental strand, 38994218 - 38994151
Alignment:
Q  161 tttaagaggcttacgggtcccgtggtttttcc-ttactcacattgagaaggttttccacgctaaaatt 227  Q
    |||||||||||   |||||||||||||||||| || ||| |||||||||||||||||||| |||||||    
T  38994218 tttaagaggctcgagggtcccgtggtttttccctttctcgcattgagaaggttttccacgttaaaatt 38994151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0479 (Bit Score: 70; Significance: 5e-31; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 113 - 311
Target Start/End: Original strand, 2727 - 2937
Alignment:
Q  113 tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaa 208  Q
    ||||||| ||||||||| | ||||||||||||||| ||||||||||| | ||||||||||  | ||||||||||||||||  |||| |||||||||||||    
T  2727 tccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggcccaagggtcccgtggttttttccctttctcacattgagaa 2826  T
Q  209 ggttttccacgctaaaattttgttgtgtgtc-----------attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcag 297  Q
    ||||||||||||||||||| | || ||||||           |||| |||||||||||  |||| ||||||||||||||||||| |||||||||| |||     
T  2827 ggttttccacgctaaaattctctt-tgtgtcattacgcttatatttcacgtttccgct--agtgtctattttgagttcacggagaagggaaattatgcat 2923  T
Q  298 gcatttcccaacat 311  Q
    ||||||||||||||    
T  2924 gcatttcccaacat 2937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 2e-30; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 60 - 310
Target Start/End: Complemental strand, 9757480 - 9757212
Alignment:
Q  60 atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata 153  Q
    |||||||||||||||||||||||  |   |||||||||||| | |||     || || ||||||| ||||||||| | ||||||||||||||| ||||||    
T  9757480 atagtgagccaatttgtgagagtgttccttacaaattgagagatatattatagtgagatccacctaagggtgaagttgttgtattcccattatcattata 9757381  T
Q  154 gtgga---gatttaagaggcttacgggtcccgtggttttt-ccttactcacattgagaaggttttccacgctaaaattttgttgtgtgtc---------- 239  Q
    |||||     ||||||||||  | |||||||||||||||| |||| |||||||||||||||||||||||||||||||| | || ||||||              
T  9757380 gtggaagttttttaagaggcccaagggtcccgtggtttttccctttctcacattgagaaggttttccacgctaaaattctctt-tgtgtcattacgctta 9757282  T
Q  240 -attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaaca 310  Q
     |||| |||||||||||  |||||||||||||||||||||||||| |||||||| |||||||||| ||||||    
T  9757281 tatttcacgtttccgct--agtgcctattttgagttcacggaggaaggaaattatgcaggcatttaccaaca 9757212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 132 - 229
Target Start/End: Complemental strand, 37287069 - 37286972
Alignment:
Q  132 ttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaatttt 229  Q
    ||||||||  |||||||||||||||||  ||||||| ||||| |||||||||| |||||||||  ||||||||||||||||||||| |||||||||||    
T  37287069 ttgtattcttattattattatagtggaagtttaagatgcttaagggtcccgtgatttttcctttttcacattgagaaggttttccatgctaaaatttt 37286972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 115 - 227
Target Start/End: Complemental strand, 42683038 - 42682924
Alignment:
Q  115 cacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggtt 212  Q
    ||||| ||||||||| | ||||||||||||||| ||||||||||| | |||||||||   | |||||||||| ||||||||| |||||||||||||||||    
T  42683038 cacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggtccaagggtcccgtgatttttcctttctcacattgagaaggtt 42682939  T
Q  213 ttccacgctaaaatt 227  Q
    ||||||||| |||||    
T  42682938 ttccacgctgaaatt 42682924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 1e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 132 - 225
Target Start/End: Original strand, 37037942 - 37038035
Alignment:
Q  132 ttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaa 225  Q
    |||||||| ||||||  |||||||| |  ||||||||||  | |||||||||||||| ||||| ||||||||||||||||||||| ||||||||    
T  37037942 ttgtattctcattatcgttatagtgaaagtttaagaggcccaagggtcccgtggtttctcctttctcacattgagaaggttttcctcgctaaaa 37038035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 258 - 292
Target Start/End: Original strand, 37038074 - 37038108
Alignment:
Q  258 agtgcctattttgagttcacggaggagggaaatta 292  Q
    ||||||||||||||||||||||||||| |||||||    
T  37038074 agtgcctattttgagttcacggaggagagaaatta 37038108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 132 - 310
Target Start/End: Complemental strand, 342404 - 342217
Alignment:
Q  132 ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggttt-ttcc-ttactcacattgagaaggttttccacgctaaaattt 228  Q
    ||||||||||||||| ||||||||||| | ||||||||||  | || ||||||||||| |||| || |||| |||||||||||||| ||||||||||||     
T  342404 ttgtattcccattatcattatagtggaagttttaagaggcccaaggatcccgtggtttcttccatttctcatattgagaaggtttttcacgctaaaattc 342305  T
Q  229 tgttgtgtgtc---------attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaaca 310  Q
    | ||||||            |||| ||||||| ||||  ||||||||||||||||||||||||||| |||||| |||||||||| ||||||    
T  342304 t-ttgtgtcattacgcttatatttcacgtttctgcta--gtgcctattttgagttcacggaggaggaaaattatgcaggcattttccaaca 342217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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