View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2938_low_2 (Length: 552)
Name: NF2938_low_2
Description: NF2938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2938_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 447; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 12 - 523
Target Start/End: Complemental strand, 52971408 - 52970896
Alignment:
| Q |
12 |
gagatgaagtgaaaatggtgatggaaaaaatgggannnnnnngcagctcagaaagcgaggaacttgaagaaaagtatggttccaaggagctttgtgaagt |
111 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52971408 |
gagatgaagtgaaaatggtgatggaaaaaatgggatttttttgcagctcagaaagcgaggaacttgaagaaaagtatggttccaaggagctttgtgaagt |
52971309 |
T |
|
| Q |
112 |
gtttgaagagaatgagcctagtttggtggagttgaagcaagcttttgatgtttttgatgagaacaaagatggttttattgatgcaaaggagttgcaaaga |
211 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52971308 |
gtttgaagagaatgagcctagtttggaggagttgaagcaagcttttgatgtttttgatgagaacaaagatggttttattgatgcaaaggagttgcaaaga |
52971209 |
T |
|
| Q |
212 |
gttcttgttattttgggattgaaacaaggatcagaatttgagaactgccaaaagatgatcacaatttttgatgaaaatcaagatggaagaattgatttca |
311 |
Q |
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| T |
52971208 |
gttcttgttattttgggattgaaacaaggatcagaatttgagaactgccaaaagatgatcacaatttttgatgaaaatcaagatggaagaattgatttca |
52971109 |
T |
|
| Q |
312 |
ttgagtttgtaaatattatgaaaaaccacttctgctgctaatctgtttgttgttcccttatttaagaaggatattcatataatataacataagcttagta |
411 |
Q |
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| T |
52971108 |
ttgagtttgtaaatattatgaaaaaccacttctgctgctgatctgtttgttgttcccttatttaagaaggatattcatataatataacataagcttagtt |
52971009 |
T |
|
| Q |
412 |
gatgtttgcatccacggtgatttttggcaaaattacgtgatttagttgaatat-nnnnnnntgttaattttgctcaatccaaccattaaaatgaattcat |
510 |
Q |
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| T |
52971008 |
gatgtttgcatccatggtgatttttggcaaaattacgtgatttagttgaatataaaaaaaatgttaattttgctcaatccaaccattaaaatgaattcat |
52970909 |
T |
|
| Q |
511 |
atgacaaatataa |
523 |
Q |
| |
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||||||||||||| |
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| T |
52970908 |
atgacaaatataa |
52970896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 163 - 306
Target Start/End: Complemental strand, 52967369 - 52967223
Alignment:
| Q |
163 |
ttttgatgagaacaaagatggttttatt-gatgcaaaggagttgcaaagagttcttgttatttt--gggattgaaacaaggatcagaatttgagaactgc |
259 |
Q |
| |
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||||||||| ||||||||||||||| || |||||| ||||||||||||||||||||| |||||| ||| || ||||||||||||||||||||||| || |
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| T |
52967369 |
ttttgatgacaacaaagatggttttgtttgatgcataggagttgcaaagagttcttgctattttttggggttcaaacaaggatcagaatttgagaaatgt |
52967270 |
T |
|
| Q |
260 |
caaaagatgatcacaatttttgatgaaaatcaagatggaagaattga |
306 |
Q |
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|||||||| |||| | |||||||||||||||||||| ||||||||| |
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| T |
52967269 |
caaaagattatcaagaattttgatgaaaatcaagatgaaagaattga |
52967223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 129
Target Start/End: Complemental strand, 52967467 - 52967393
Alignment:
| Q |
54 |
gcagctcagaaagcgaggaacttgaagaaaagtatggttccaaggagctttgtgaagtgtttgaagagaatgagcc |
129 |
Q |
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||||||||| ||| ||| ||||||| |||||||| |||| |||||| |||||||||||||| | ||||||||||| |
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| T |
52967467 |
gcagctcagtaagtgagaaacttgagtaaaagtatagttc-aaggaggtttgtgaagtgttttaggagaatgagcc |
52967393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 127; Significance: 3e-65; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 54 - 336
Target Start/End: Original strand, 2855815 - 2856097
Alignment:
| Q |
54 |
gcagctcagaaagcgaggaacttgaagaaaagtatggttccaaggagctttgtgaagtgtttgaagagaatgagcctagtttggtggagttgaagcaagc |
153 |
Q |
| |
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||||||||||||| || |||||||||||||| ||| |||| |||||| ||| |||| ||||||| ||||||||||| ||||||| ||| ||||| || |
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| T |
2855815 |
gcagctcagaaagtgatgaacttgaagaaaaatatagttcgaaggagttttctgaattgtttgatgagaatgagccaagtttggaggaagtgaagatggc |
2855914 |
T |
|
| Q |
154 |
ttttgatgtttttgatgagaacaaagatggttttattgatgcaaaggagttgcaaagagttcttgttattttgggattgaaacaaggatcagaatttgag |
253 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| | |||||||||||| || |||| || ||| ||||| |
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| T |
2855915 |
ttttgatgtttttgatgagaacaaagatggttttattgatgcaatggagttgaaaagagttatgtgtattttgggatttaaggaaggttcggaagttgag |
2856014 |
T |
|
| Q |
254 |
aactgccaaaagatgatcacaatttttgatgaaaatcaagatggaagaattgatttcattgagtttgtaaatattatgaaaaa |
336 |
Q |
| |
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|| || || |||||||| | | |||||||| |||||||||||||||||||||||||||||| |||||||| |||||| |||| |
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| T |
2856015 |
aattgtcagaagatgattaagaattttgatgcaaatcaagatggaagaattgatttcattgaatttgtaaaaattatggaaaa |
2856097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 56 - 231
Target Start/End: Original strand, 2851720 - 2851900
Alignment:
| Q |
56 |
agctcagaaagcgaggaacttgaagaaaagtatggttccaaggagctttgtgaagtgtttgaagagaatgagcctagtttggtggagttgaagcaagctt |
155 |
Q |
| |
|
||||||||||| || |||||||||||||| |||||||| ||||||||| |||| ||||||| |||||||| || |||| | ||| ||||| ||| |
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| T |
2851720 |
agctcagaaagtgatgaacttgaagaaaaatatggttcaaaggagcttcttgaattgtttgatgagaatgaaccatgtttagaggaagtgaagatgactt |
2851819 |
T |
|
| Q |
156 |
ttg-------atgtttttgatgagaacaaagatggttttattgatgcaaaggagttgcaaagagttcttgttattttgggatt |
231 |
Q |
| |
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||| ||| |||| |||||||||||||||| |||||||||||| |||||||||||||||| | |||||||||||| |
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| T |
2851820 |
ttgaatttttatggttttaatgagaacaaagatgg--ttattgatgcaatggagttgcaaagagttatgtgtattttgggatt |
2851900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 120; Significance: 4e-61; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 54 - 337
Target Start/End: Original strand, 10477734 - 10478017
Alignment:
| Q |
54 |
gcagctcagaaagcgaggaacttgaagaaaagtatggttccaaggagctttgtgaagtgtttgaagagaatgagcctagtttggtggagttgaagcaagc |
153 |
Q |
| |
|
||||||||||||| || |||||||| ||||| |||||||| || || |||| |||| ||||||| ||||||||||| ||||||| ||| ||||| || |
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| T |
10477734 |
gcagctcagaaagtgatgaacttgatgaaaaatatggttcaaatgaactttctgaattgtttgatgagaatgagccaagtttggaggaagtgaagatggc |
10477833 |
T |
|
| Q |
154 |
ttttgatgtttttgatgagaacaaagatggttttattgatgcaaaggagttgcaaagagttcttgttattttgggattgaaacaaggatcagaatttgag |
253 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||| | ||||||||||||||| |||| | |||| || || |
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| T |
10477834 |
ttttgacgtttttgatgagaacaaagatggatttattgatgcaaaggaattgcaaagagttatgtgtattttgggattgaatgaaggtttagaagttaag |
10477933 |
T |
|
| Q |
254 |
aactgccaaaagatgatcacaatttttgatgaaaatcaagatggaagaattgatttcattgagtttgtaaatattatgaaaaac |
337 |
Q |
| |
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|| || || |||||||||| | |||||||||||| |||||||||||||||||||||| ||| |||||||| |||||| ||||| |
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|
| T |
10477934 |
aattgtcagaagatgatcaagaattttgatgaaaaccaagatggaagaattgatttcactgaatttgtaaaaattatggaaaac |
10478017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 54 - 291
Target Start/End: Original strand, 8216104 - 8216341
Alignment:
| Q |
54 |
gcagctcagaaagcgaggaacttgaagaaaagtatggttccaaggagctttgtgaagtgtttgaagagaatgagcctagtttggtggagttgaagcaagc |
153 |
Q |
| |
|
|||||| |||||| || |||||||||||||| ||| |||| |||||| ||| |||| ||||||| ||||||||||| ||||||| ||| | || || |
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|
| T |
8216104 |
gcagcttagaaagtgatgaacttgaagaaaaatatagttcgaaggagttttctgaattgtttgatgagaatgagccaagtttggaggaagtttagatggc |
8216203 |
T |
|
| Q |
154 |
ttttgatgtttttgatgagaacaaagatggttttattgatgcaaaggagttgcaaagagttcttgttattttgggattgaaacaaggatcagaatttgag |
253 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||| ||| | |||||||||||| || |||| |||||| ||||| |
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|
| T |
8216204 |
ttttgatgtttttgatgagaacaaagatggttttattgattcaatggagttgaaaaatgttatgtgtattttgggatttaaggaaggttcagaagttgag |
8216303 |
T |
|
| Q |
254 |
aactgccaaaagatgatcacaatttttgatgaaaatca |
291 |
Q |
| |
|
|| || || |||||||| | | |||||||| |||||| |
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|
| T |
8216304 |
aattgtcagaagatgattaagaattttgatgcaaatca |
8216341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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