View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2938_low_6 (Length: 249)
Name: NF2938_low_6
Description: NF2938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2938_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 46238972 - 46239213
Alignment:
| Q |
1 |
ctggggttatcaagaccatgagattaggctgtggtgtaaaatggataggattgagaatgactttgttcaagttgatctagacaacattgcagatgagatt |
100 |
Q |
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| T |
46238972 |
ctggggttatcaagaccatgagattaggctgtggtgtaaaatggataggattgagaatgactttgttcaagttgatctagacaacattgcagatgagatt |
46239071 |
T |
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| Q |
101 |
gccatctatgctgtgggtgaaggaattgatggacagatttttgtggagcataatgttactaatatgtctgtcaaggttgatatgcctaactttgtggatt |
200 |
Q |
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| T |
46239072 |
gccatctatgctgtgggtgaaggaattgatggacaaatttttgttgagcataatgttactaatatgtctgtcaaggttgatatgcctaactttgtggatt |
46239171 |
T |
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| Q |
201 |
tgaatgagtctagtggggaagatgaagacaatttgatgatgt |
242 |
Q |
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| T |
46239172 |
tgaatgagtctagtggggaagatgaagacaatttgatgatgt |
46239213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 3455685 - 3455444
Alignment:
| Q |
1 |
ctggggttatcaagaccatgagattaggctgtggtgtaaaatggataggattgagaatgactttgttcaagttgatctagacaacattgcagatgagatt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
3455685 |
ctggggttatcaagaccatgagattaggctgtggtgtaaaatggataggattgagaatgactttgttcaagttgatctagacagcattgcagatgagatt |
3455586 |
T |
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| Q |
101 |
gccatctatgctgtgggtgaaggaattgatggacagatttttgtggagcataatgttactaatatgtctgtcaaggttgatatgcctaactttgtggatt |
200 |
Q |
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| T |
3455585 |
gccatctatgctgtgggtgaaggaattgatggacaaatttttgttgagcataatgttactaatatgtctgtcaaggttgatatgcctaactttgtggatt |
3455486 |
T |
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| Q |
201 |
tgaatgagtctagtggggaagatgaagacaatttgatgatgt |
242 |
Q |
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| T |
3455485 |
tgaatgagtctagtggggaagatgaagacaatttgatgatgt |
3455444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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