View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2940_high_1 (Length: 1350)
Name: NF2940_high_1
Description: NF2940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2940_high_1 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 1121; Significance: 0; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 1121; E-Value: 0
Query Start/End: Original strand, 18 - 1342
Target Start/End: Complemental strand, 33383022 - 33381699
Alignment:
| Q |
18 |
aatccggattctcttccaaaatcagttttgaatcaannnnnnnattaaaaccggattgtaatctggtttttaattcaaacctgttttaactcaacatcag |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33383022 |
aatccggattctcttccaaaatcagttttgaatcaatttttttattaaaaccggattgtaatctggtttttaattcaaacctgttttaactcaacatcag |
33382923 |
T |
|
| Q |
118 |
atttcaacaatatgagaacatgtccagaattgcaccatggttactttacagtaaagcggaacatgaaaagtaaccatgtgttcgcaacaaggaaatgagt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33382922 |
atttcaacaatatgagaacatgtccagaattgcaccatggttactttacagtaaagcggaacatgaaaagtaaccatgtgttcgcaacaaggaaatgagt |
33382823 |
T |
|
| Q |
218 |
aatacgcnnnnnnnnncttaatttcatgagcaaatttattaacttttacaatgcgactcagaaatatcctatatagtcaactgcactcacgtcacagata |
317 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33382822 |
aatacgctttttttt--ttaatttcatgaacaaatttattaacttttacaatgcgactcagaaatatcctatatagtcaactgcactcacgtcacagata |
33382725 |
T |
|
| Q |
318 |
tgagatgacttcagcacttctagcattgaaatcccttaaggctgcacatttcacatgctgcaatcatataaaaattaacttatggtattgtcgcatcaca |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
33382724 |
tgagatgacttcagcacttctagcattgaaatcccttaaggctgcacatttcacatgctgcaatcatataaaaattaacttatggtattgtcacatcaca |
33382625 |
T |
|
| Q |
418 |
tatgagggaaaaactcactcatgttgaaaaacaacatagattaaggatctgtttgttagagttataaaaaagtgattatgatactcaatacataatcttg |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33382624 |
tatgagggaaaaactcactcatgttgaaaaacaacatagattaaggatctgtttgttagagttataaaaaagtgattatgatactcaatacataatcttg |
33382525 |
T |
|
| Q |
518 |
agattaaattttagagattctttaaaaaagtaggaactactttgtatttgtttac-ataatgaaaatcacnnnnnnnnnnnnnnnnntaaaccagttatt |
616 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
33382524 |
agattaaattttagagattctttaaaaaagtaggaactactttgtatttgtttaccataatgaaaatcacttttttttttttaaaaataaaccagttatt |
33382425 |
T |
|
| Q |
617 |
gaaaatgatttccaaaataaactacttgtttgaaaattcactcatcaatgaatgcaatgtaatttcaggtatgtgttgtaaaatcgcaagagttaaaaca |
716 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33382424 |
gaaaatgatttccaaaataaactacttgtttgaaaattcacccatcaatgaatgcaatgtaatttcaggtatgtgttgtaaaatcgcaagagttaaaaca |
33382325 |
T |
|
| Q |
717 |
caaaccaattcgacacatagagaacattcaaacaccttacacaaataagaataatgactcgtgaataatagcgtaaaagaaacaaggaccgtcaacaggt |
816 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33382324 |
caaaccaattcgacacatagagaacattcaaacaccttacacaaataagaataataactcgtgaataatagcgtaaaagaaacaaggaccgtcaacaggt |
33382225 |
T |
|
| Q |
817 |
atcttatgacatggaatcaatgtccttataaacttgttacaatgtgaagatatcatactattaaaggaatgatgttagattgaaacttgaaaatacttcc |
916 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33382224 |
atcttatgacatggaatcaatgtccttataaacttgttacaatgtgaagatatcatactattaaaggaatgatgttagattgaaacttgaaaatacttcc |
33382125 |
T |
|
| Q |
917 |
ccatctcgagtccatgatattagattgaataagatccatacccagctgcagattttgttgaataacaaaggaataatgtgtatcagttaggagcggccaa |
1016 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33382124 |
ccatctcgagtccatgatattagattgaataagatccatacccagctgcagattttgttgaataacaaaggaataatgtgtatcagttaggagcggccaa |
33382025 |
T |
|
| Q |
1017 |
tcttaacgtaacgattgcttcttgtaaactatacaaatttaatgcacttatgaaattattnnnnnnnnnnnnnnnnnnnnnncattggcctgaatctttg |
1116 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
33382024 |
tcttaacgtaacgattgcttcttgtaaactatataaatttaatgcacttatgaaattattaaaatcaaaatcaaaatcaaaacattggcctgaatctttg |
33381925 |
T |
|
| Q |
1117 |
tcactcaacatatgtacaataatattcaaaacagtttgagcattattattgttttcctccaacaatttatggtgttgatttcttctttcaaaatcaatag |
1216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33381924 |
tcactcaacatatgtacaataatattcaaaacagtttgagcattattattgttttcctccaacaatttatggtgttgatttcttctttcaaaatcaatag |
33381825 |
T |
|
| Q |
1217 |
ttttatttttcttgcaagttgaaaacttccgtgttggctgatctcataagtaatctccttaatcacaaagggagagagatgctttaaaatataaaggata |
1316 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33381824 |
ttttatttttcttgcaagttgaaaacttccgttttggctgatctcataagtaatctccttaatcacaaagggagagagatgctttaaaatataaaggata |
33381725 |
T |
|
| Q |
1317 |
gtcattcatattgtatgttgatgatg |
1342 |
Q |
| |
|
|||||||||||||||||||||||||| |
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|
| T |
33381724 |
gtcattcatattgtatgttgatgatg |
33381699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 127; E-Value: 6e-65
Query Start/End: Original strand, 1099 - 1261
Target Start/End: Original strand, 24630323 - 24630485
Alignment:
| Q |
1099 |
cattggcctgaatctttgtcactcaacatatgtacaataatattcaaaacagtttgagcattattattgttttcctccaacaatttatggtgttgatttc |
1198 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24630323 |
cattggcctaactctttgtcactcaacatatgtacaataatattcaaaactgtttgagcattattattgttttcctccaacaatttatggtgttgatttc |
24630422 |
T |
|
| Q |
1199 |
ttctttcaaaatcaatagttttatttttcttgcaagttgaaaacttccgtgttggctgatctc |
1261 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||| |||||| |||||| |||| ||||||||| |
|
|
| T |
24630423 |
ttcttacaaaatcaatacttttatttttcttgcaggttgaagacttccatgtttgctgatctc |
24630485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 90; E-Value: 8e-43
Query Start/End: Original strand, 930 - 1058
Target Start/End: Complemental strand, 33266910 - 33266779
Alignment:
| Q |
930 |
atgatattagattgaataagatccatacccagctgcagattttgttgaataacaaaggaat---aatgtgtatcagttaggagcggccaatcttaacgta |
1026 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
33266910 |
atgatattagattgaataagatccatatccagctgcagtttttgttgaataacaaaggaataagaatgtgtatcagttaggagcggccaaccttaacgta |
33266811 |
T |
|
| Q |
1027 |
acgattgcttcttgtaaactatacaaatttaa |
1058 |
Q |
| |
|
| |||||||||||||| |||||| ||| |||| |
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|
| T |
33266810 |
atgattgcttcttgtagactatataaaattaa |
33266779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 841 - 955
Target Start/End: Complemental strand, 33276693 - 33276579
Alignment:
| Q |
841 |
cttataaacttgttacaatgtgaagatatcatactattaaaggaatgatgttagattgaaacttgaaaatacttccccatctcgagtccatgatattaga |
940 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||||| || || | | | ||||||||| |||||||||||||||||| ||||||||||| ||| |
|
|
| T |
33276693 |
cttattaacttgttacaatgtgaagatatcgtactattgaaagacaaaaatgatgttgaaactttaaaatacttccccatctcaagtccatgatacaaga |
33276594 |
T |
|
| Q |
941 |
ttgaataagatccat |
955 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
33276593 |
ttgaataagatccat |
33276579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 48; E-Value: 9e-18
Query Start/End: Original strand, 1279 - 1342
Target Start/End: Complemental strand, 33061858 - 33061795
Alignment:
| Q |
1279 |
tcacaaagggagagagatgctttaaaatataaaggatagtcattcatattgtatgttgatgatg |
1342 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
33061858 |
tcacaaaaggagagggatgctttaaaatataaaggatagccattcgtattgtatgttgatgatg |
33061795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 1275 - 1342
Target Start/End: Complemental strand, 33404443 - 33404376
Alignment:
| Q |
1275 |
ttaatcacaaagggagagagatgctttaaaatataaaggatagtcattcatattgtatgttgatgatg |
1342 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||||||||||| ||||| | ||||||| |||||||| |
|
|
| T |
33404443 |
ttaatcacaaatggagagatatgctttaaaatataaaggatagccattcttgttgtatgctgatgatg |
33404376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 977 - 1032
Target Start/End: Complemental strand, 33276575 - 33276517
Alignment:
| Q |
977 |
aataacaaaggaataa---tgtgtatcagttaggagcggccaatcttaacgtaacgatt |
1032 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
33276575 |
aataacaaaggaataagaatgtgtatcagttaggagcggccaaccttaacgtaacgatt |
33276517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 841 - 878
Target Start/End: Complemental strand, 33266959 - 33266922
Alignment:
| Q |
841 |
cttataaacttgttacaatgtgaagatatcatactatt |
878 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
33266959 |
cttattaacttgttacaatgtgaagatatcgtactatt |
33266922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 1e-29; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 1e-29
Query Start/End: Original strand, 287 - 408
Target Start/End: Original strand, 12579210 - 12579324
Alignment:
| Q |
287 |
tatatagtcaactgcactcacgtcacagatatgagatgacttcagcacttctagcattgaaatcccttaaggctgcacatttcacatgctgcaatcatat |
386 |
Q |
| |
|
|||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |
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|
| T |
12579210 |
tatatagtaaactgcactcacctcacagata-------acttcagcacttctagcattgaaatccctcaaggctgcacgtttcacatgctgcaatcatat |
12579302 |
T |
|
| Q |
387 |
aaaaattaacttatggtattgt |
408 |
Q |
| |
|
|||||| ||| |||||||||| |
|
|
| T |
12579303 |
aaaaatgaacccatggtattgt |
12579324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 6e-25
Query Start/End: Original strand, 903 - 1073
Target Start/End: Original strand, 12580893 - 12581063
Alignment:
| Q |
903 |
ttgaaaatacttccccatctcgagtccatgatattagattgaataagatccatacccagctgcagattttgttgaataacaaagg-aataatgtgtatca |
1001 |
Q |
| |
|
|||||||||| || ||||||| |||||||||||||||||||||||| |||||| |||||||||| ||| ||||||||||||| |||| | ||||| | |
|
|
| T |
12580893 |
ttgaaaatacctctccatctcaagtccatgatattagattgaataaaatccatgtccagctgcagttttagttgaataacaaaattaatagt-tgtatta |
12580991 |
T |
|
| Q |
1002 |
gttaggagcggccaatcttaacgtaacgattgcttcttgtaaactatacaaatttaatgcacttatgaaatt |
1073 |
Q |
| |
|
||||| ||| ||||| |||| ||||||||||||| |||| ||||||||||||| || ||||||||||| |
|
|
| T |
12580992 |
gttagtagcagccaacattaaaataacgattgcttcaaataaaatatacaaatttaaagcgcttatgaaatt |
12581063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 114
Target Start/End: Original strand, 27905814 - 27905849
Alignment:
| Q |
79 |
tctggtttttaattcaaacctgttttaactcaacat |
114 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |
|
|
| T |
27905814 |
tctggtttttaattcaaacctgttttaagtcaacat |
27905849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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