View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2940_low_2 (Length: 948)
Name: NF2940_low_2
Description: NF2940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2940_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 18 - 387
Target Start/End: Original strand, 24524150 - 24524519
Alignment:
| Q |
18 |
tgaagcatgcatctaacagaacttagaagacaaaatctcaagcgagatcttgtccgtttcaatatcctgaatggttgaatgtaagacgaggggaattttc |
117 |
Q |
| |
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|||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24524150 |
tgaagcattcatctaacagaaattagaagacaaaatctcaagcgagatcttgtccgtttcaatatcctgaatggttgaatgtaagacgaggggaattttc |
24524249 |
T |
|
| Q |
118 |
gtaatatcagaaataaatttggatgcagtatcgtgccaatgaatgcaggaagttatttccaagtttggaggaattgtggattgaaggctcgtaaaaatct |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24524250 |
gtaatatcagaaataaatttggatgcagtatcgtgccaatgaatgcaggaagttatttccaagtttggaggaattgtggattgaaggctcgtaaaaatct |
24524349 |
T |
|
| Q |
218 |
ataatattaaggtatacagttggcttttgattgtatcaatttgtattttttactattattaccgcgagatatgctacacgacaagtgaaacatacagagt |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |
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| T |
24524350 |
ataatattaaggtatacagttggcttttgattgtatcaatttgtattttttactattattaccgcgagatatgctacacgacaagagaaacatacaaagt |
24524449 |
T |
|
| Q |
318 |
tggagcgcacacacgttgctcaaaaccaaacggctaccatagagaaacaaacaaatcccctaggactagc |
387 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24524450 |
tggagcgcacacacgttgctcaaaaccaaacggctaccatagagaaacaaacaaatcccctaggactagc |
24524519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 517 - 875
Target Start/End: Original strand, 24524526 - 24524885
Alignment:
| Q |
517 |
agcagaacagcaccaacaattcagcggacagaaagcagcaaccacttccaacagcccccaaaacca-gaaaaaagacatccagacggaccactgatctgc |
615 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
24524526 |
agcagaacagcaccaacaattcagccgacagaaagcagcaaccacttccaacagcccccaaaaccaagaaaaaagacatccagacggaccactgatctgc |
24524625 |
T |
|
| Q |
616 |
tgcagctggactcctcttcaatcattctcccggatcccaactccattcatagaataaccgagggctcccctttaaacggctaagactccatttcaaagat |
715 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||| |
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|
| T |
24524626 |
tgcagctggactcctcttcaatcattctcccgaatcccaactccattcatagaataaccaagggctcccctttaagcgggtaagactccatttcaaagat |
24524725 |
T |
|
| Q |
716 |
aacactttgatctcatccacaatatcctcacaatctctagccaaattcttgacgatcttttcattcctagccttccaaagaacccaaataacggagtgcc |
815 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24524726 |
aacaccttgatctcatccacaatatcctcacaatctctagccaaattcttgacgatcttttcattcctagccttccaaagaacccaaataacggagtgcc |
24524825 |
T |
|
| Q |
816 |
atattaaccaataacccctctttgatatcaccaatgaacctttctagttgcaaaaacaaa |
875 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
24524826 |
atattaaccaataacccctctttgatatcagcaatgaacctttctagttgcaaaaacaaa |
24524885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 24524053 - 24524090
Alignment:
| Q |
16 |
gttgaagcatgcatctaacagaacttagaagacaaaat |
53 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
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|
| T |
24524053 |
gttgaagcatgcatctaacagaacttagaagacaaaat |
24524090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 349; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 515 - 891
Target Start/End: Original strand, 9130671 - 9131047
Alignment:
| Q |
515 |
gcagcagaacagcaccaacaattcagcggacagaaagcagcaaccacttccaacagcccccaaaaccagaaaaaagacatccagacggaccactgatctg |
614 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9130671 |
gcagcagaacagcaccaacaattcagccgacagaaagcagcaaccacttccaacagcccccaaaaccagaaaaaagacatccagacggaccactgatctg |
9130770 |
T |
|
| Q |
615 |
ctgcagctggactcctcttcaatcattctcccggatcccaactccattcatagaataaccgagggctcccctttaaacggctaagactccatttcaaaga |
714 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||| |
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|
| T |
9130771 |
ctgcagctagactcctcttcaatcattctcccgaatcccaactccattcatagaataaccaagggctcccctttaagcgggtaagactccatttcaaaga |
9130870 |
T |
|
| Q |
715 |
taacactttgatctcatccacaatatcctcacaatctctagccaaattcttgacgatcttttcattcctagccttccaaagaacccaaataacggagtgc |
814 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9130871 |
taacaccttgatctcatccacaatatcctcacaatctctagccaaattcttgacgatcttttcattcctagccttccaaagaacccaaataacggagtgc |
9130970 |
T |
|
| Q |
815 |
catattaaccaataacccctctttgatatcaccaatgaacctttctagttgcaaaaacaaactacttggtctaataa |
891 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9130971 |
catattaaccaataacccctctttgatatcaccaatgaacctttctagttgcaaaaacaaactacttggtctaataa |
9131047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 319; E-Value: 1e-179
Query Start/End: Original strand, 515 - 891
Target Start/End: Original strand, 9122575 - 9122940
Alignment:
| Q |
515 |
gcagcagaacagcaccaacaattcagcggacagaaagcagcaaccacttccaacagcccccaaaaccagaaaaaagacatccagacggaccactgatctg |
614 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9122575 |
gcagcagaacagcaccaacaattcagccgacagaaagcagcaaccacttccaacagcccccaaaaccagaaaaaagacatccagacggaccactgatctg |
9122674 |
T |
|
| Q |
615 |
ctgcagctggactcctcttcaatcattctcccggatcccaactccattcatagaataaccgagggctcccctttaaacggctaagactccatttcaaaga |
714 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9122675 |
ctgcagctcgactcctcttcaatcattctcccggatctcaactccattcatagaataaccaagggctcccctttaaacggctaagactccatttcaaaga |
9122774 |
T |
|
| Q |
715 |
taacactttgatctcatccacaatatcctcacaatctctagccaaattcttgacgatcttttcattcctagccttccaaagaacccaaataacggagtgc |
814 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9122775 |
taacactttgatctcatc-----------gacaatctctagccaaattcttgacgatcttttcattcctagccttccaaagaacccaaataacggagtgc |
9122863 |
T |
|
| Q |
815 |
catattaaccaataacccctctttgatatcaccaatgaacctttctagttgcaaaaacaaactacttggtctaataa |
891 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9122864 |
catattaaccaataacccctctttgatatcaccaatgaacctttctagttgcaaaaacaaactacttggtctaataa |
9122940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 890 - 937
Target Start/End: Original strand, 9123039 - 9123086
Alignment:
| Q |
890 |
aaacatcaaataaagacattggcagtaatatctacaagagtaactgat |
937 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
9123039 |
aaacatcaaataaagacattggcagtaataactataagagtaactgat |
9123086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 890 - 937
Target Start/End: Original strand, 9131146 - 9131193
Alignment:
| Q |
890 |
aaacatcaaataaagacattggcagtaatatctacaagagtaactgat |
937 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
9131146 |
aaacatcaaataaagacattggcagtaataactataagagtaactgat |
9131193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 2e-39; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 676 - 838
Target Start/End: Original strand, 10323138 - 10323301
Alignment:
| Q |
676 |
agggctcccctttaaacggctaagactccatttcaaagataacactttgatctcatccacaatatcctcacaatctctagccaaattcttgacgatcttt |
775 |
Q |
| |
|
|||||||||||||||| ||| |||||| |||| | | || |||| ||||| |||||||||||||||| |||||||||||||||||| |||| ||| ||| |
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|
| T |
10323138 |
agggctcccctttaaatggcaaagacttcattaccatgacaacatcttgatttcatccacaatatccttacaatctctagccaaattgttgatgattttt |
10323237 |
T |
|
| Q |
776 |
t-cattcctagccttccaaagaacccaaataacggagtgccatattaaccaataacccctcttt |
838 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
10323238 |
cgcatttctagccttccaaagaaccaaaataacggagtgccaaattaaccaataacccctcttt |
10323301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 583 - 630
Target Start/End: Original strand, 10323079 - 10323126
Alignment:
| Q |
583 |
gaaaaaagacatccagacggaccactgatctgctgcagctggactcct |
630 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
10323079 |
gaaaaatgacatccagacggaccacttatctgcttcagctggactcct |
10323126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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