View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2940_low_3 (Length: 499)
Name: NF2940_low_3
Description: NF2940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2940_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 454; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 18 - 487
Target Start/End: Complemental strand, 25934681 - 25934212
Alignment:
| Q |
18 |
gaacctacatgaacctccatcaccaccaccgccaccgccaccagcatcatgtgtcatgaaatttccacctcttatgcttccaaaagctgagagtgtatct |
117 |
Q |
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|||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25934681 |
gaacctacatgaacctccatcacctccaccaccaccgccaccagcatcatgtgtcatgaaatttccacctcttatgcttccaaaagctgagagtgtatct |
25934582 |
T |
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| Q |
118 |
gccatttttaattcagatgaataatcaagctttaaatcaataaaactagactcatccatgcctttaaaatcactctctcttagtgaaaacacacgcctat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25934581 |
gccatttttaattcagatgaataatcaagctttaaatcaataaaactagactcatccatgcctttaaaatcactctctcttagtgaaaacacacgcctat |
25934482 |
T |
|
| Q |
218 |
tgtagctgcttccatcaatttccattacaccactctttctaccattttcatattcatagaagaaatcacttcttcttggttcagcttcactgtaaccact |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25934481 |
tgtagctgcttccatcaatttccattacaccactctttctaccattttcatattcatagaagaaatcacttcttcttggttcagcttcactgtaaccact |
25934382 |
T |
|
| Q |
318 |
tctcctaccagattctagcatcaaaccaccattcacacctgaacttctagctgcagaaatagagcttctagcacctgataaaactgaatcaccaccatct |
417 |
Q |
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||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25934381 |
tctcctacctgattctaacatcaaaccaccattcacacctgaacttctagctgcagaaatagagcttctagcacctgataaaactgaatcaccaccatct |
25934282 |
T |
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| Q |
418 |
tcagatccaaatatagctccacccctgaaactgcacagagatcttgatcttgacacacctccatgatgat |
487 |
Q |
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| T |
25934281 |
tcagatccaaatatagctccacccctgaaactgcacagagatcttgatcttgacacacctccatgatgat |
25934212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 133 - 327
Target Start/End: Original strand, 16703920 - 16704111
Alignment:
| Q |
133 |
gatgaataatcaagctttaaatcaataaaactagactcatccatgcctttaaaatcactctctcttagtgaaaacacacgcctattgtagctgcttccat |
232 |
Q |
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||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||| |
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| T |
16703920 |
gatgaataatcaagcttcaaatcaataaaacgagattcatccatgcctttaaaatcactctctcttagtgaaaacagacgcctgttgtagct---tccat |
16704016 |
T |
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| Q |
233 |
caatttccattacaccactctttctaccattttcatattcatagaagaaatcacttcttcttggttcagcttcactgtaaccacttctcctacca |
327 |
Q |
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| T |
16704017 |
caatttccataacaccactcttcctaccattttcatattcatagaagaaatcacttcttcttggttcagcttcactataaccacttctcctacca |
16704111 |
T |
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